De Novo Synthesis of Poly(3-hydroxybutyrate-co-3-hydroxypropionate) from Oil by Engineered Cupriavidus necator
Abstract
1. Introduction
2. Materials and Methods
2.1. Strains and Plasmids
2.2. P(3HB-co-3HP) Fermentation and Purification
2.3. Analytical and Statistical Methods
3. Results and Discussion
3.1. Engineering the Fragmentized MCR in C. necator Promoted P(3HB-co-3HP) Production in Mild Condition
3.2. Production of P(3HB-co-3HP) from Variable Oil Substrates
3.3. Fed-Batch Production of P(3HB-co-3HP)
4. Concluding Remarks and Future Prospects
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Strains/Plasmids | Description | Source | 
|---|---|---|
| Strains | ||
| Cupriavidus necator H16 (Ralstonia eutropha H16) | Chassis strain | DSM 428 | 
| Escherichia coli S17 | Donor strain for conjugational transfer | DSM 9079 | 
| Escherichia coli BL21(DE3) | F- ompT hsdSB(rB-mB-) gal dcm rne131(DE3) | Invitrogen | 
| Cupriavidus necator ZL1 | Engineered Cupriavidus necator H16 carrying pBBR-ara-pct-mcr-acc ADBC | This study | 
| Plasmids | ||
| pSMART-LCKan | Cloning plasmid | Lucigen | 
| pBBR1MCS-2 | Starting plasmid (broad host range) | Lab stored | 
| pACYC-pct-pha | Carrying gene pct, evolved propionate CoA-transferase (V193A) from Clostridium propionicum | [15] | 
| pACYC-acc ADBC | Carrying gene acc ADBC, acetyl-CoA carboxylase from Escherichia coli K-12 | [16] | 
| pET24a-mcr(1–549)-mcr(550–1219) | Carrying gene mcr(1–549) and mcr(550–1219), evolved N-terminal and C-terminal of malonyl-CoA reductase from Chloroflexus aurantiacus | [16] | 
| pSMART-LCKan-Para-pct | pSMART-LCKan derivative carrying genes ara, pct | This study | 
| pSMART-LCKan-Para-mcr | pSMART-LCKan derivative carrying genes ara, mcr | This study | 
| pSMART-LCKan-Para-acc ADBC | SMART-LCKan derivative carrying genes ara, acc ADBC | This study | 
| pBBR-ara-pct | pBBR1MCS-2 derivative carrying genes ara, pct | This study | 
| pBBR-ara-pct-mcr | pBBR1MCS-2 derivative carrying genes ara, pct, mcr(1–549)-mcr(550–1219) | This study | 
| pBBR-ara-pct-mcr-acc ADBC | pBBR1MCS-2 derivative carrying genes ara, pct, mcr(1–549)-mcr(550–1219), acc ADBC | This study | 
| Primer Name | Sequence | 
|---|---|
| ara F | ATATCAAGCTTGAATTCGTTTTATGACAACTTGACGGCTAC | 
| ara R | CTTTGCGCATCGTTTCACTCCATCCAAAAAAAC | 
| araP F | ATATCAAGCTTGAATTCGTTAAGAAACCAATTGTCCATATTGC | 
| araP R | CTTTGCGCATCGTTTCACTCCATCCAAAAAAAC | 
| accB F1 | GAGACCTTAGGAGGTAAACATATGGATATTCGTAAGATTAAAAAACTGATC | 
| accB R1 | ATTCTCTGCAGGCCTGTACAGTTACTCGATGACGACCAG | 
| accD F2 | TGAGCTACGGTTACGCGTAAATGAGCTGGATTGAACGAATTAAAAGC | 
| accD R2 | GAATATCCATTCAGGCCTCAGGTTCCTGAT | 
| accADBC F | CCTCCGACCGGAGGCTTTTAGCTGGAAGAAACCAATTGTCCATATTGCATCAG | 
| accADBC R | TTCGATATCAAGCTTATCGATACCGAGTCAAAAGCCTCCGGTCGG | 
| accBC F | TGAGGCCTGAATGGATATTCGTAAGATTAAAAAAC | 
| accBC R | CGATATCTAGAGAATTCGTCTTATTTTTCCTGAAGACCGAG | 
| mcr R1 | GCTTATCGATACCGTCGACCAGTCAAAAGCCTCCGGTCGG | 
| mcr F1 | TGACTGTACCGGGCCCCCCCAAGAAACCAATTGTCCATATTGCATCAG | 
| Mcr(1–549)F1 | GGAGTGAAACGATGAGCGGAACAGGACGACTG | 
| Mcr(550–1219)R1 | CGATATCTAGAGAATTCGTCTTACACGGTAATCGCCCGTCCGCG | 
| M13 F | GTAAAACGACGGCCAGT | 
| M13 R | CAGGAAACAGCTATGAC | 
| pct F | GAGTGAAACGATGCGCAAAGTGCCGATTATTAC | 
| pct R | CGATATCTAGAGAATTCGTCTTATGATTTCATTTCTTTCAGGCCC | 
| SL1 | CAGTCCAGTTACGCTGGAGTC | 
| SR1 | GGTCAGGTATGATTTAAATGGTCAGT | 
| Level | Oil | Arabinose (g/L)  | DCW (g/L)  | PHA (wt%)  | PHA (g/L)  | 3HP (mol%)  | 
|---|---|---|---|---|---|---|
| Flask | Soybean oil | 0.25 | 1.52 ± 0.11 | 57.33 ± 5.11 | 0.87 ± 0.11 | 21.36 ± 4.11 | 
| Flask | Soybean oil | 0.50 | 2.11 ± 0.13 | 62.42 ± 5.51 | 1.31 ± 0.12 | 27.57 ± 5.81 | 
| Flask | Soybean oil | 1.00 | 1.56 ± 0.09 | 56.76 ± 4.51 | 0.89 ± 0.09 | 1.12 ± 0.05 | 
| Flask | Soybean oil | 2.00 | 1.21 ± 0.11 | 52.41 ± 5.21 | 0.63 ± 0.06 | 0 | 
| Flask | Palm oil | 0.50 | 1.56 ± 0.18 | 42.41 ± 6.21 | 0.66 ± 0.09 | 22.13 ± 6.05 | 
| Flask | Olive oil | 0.50 | 2.35 ± 0.21 | 45.18 ± 4.11 | 1.06 ± 0.08 | 25.16 ± 5.15 | 
| Fermenter | Soybean oil | 0.50 | 6.08 ± 0.51 | 51.15 ± 3.42 | 3.11 ± 0.29 | 32.25 ± 4.02 | 
| Stain | Pathway | Substrate | Supplementation | Titer (g/L)  | 3HP (mol%)  | Reference | 
|---|---|---|---|---|---|---|
| C. necator | malonyl-CoA | oil | No | 3.1 | 20–30 | This study | 
| C. necator | malonyl-CoA | sugar and oil | No | 2.1 | trace | [13] | 
| C. necator | β-alanine | gluconate, alanine | cysteine | 1.6 | 0–91 | [10] | 
| E. coli | pduP | glycerol | VB12 | 9.8 | 10–95 | [11] | 
| E. coli | pduP | glucose | VB12 (in LB) | 2.1 | 60–80 | [12] | 
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Li, M.; Li, W.; Zhang, T.; Guo, K.; Feng, D.; Liang, F.; Xu, C.; Xian, M.; Zou, H. De Novo Synthesis of Poly(3-hydroxybutyrate-co-3-hydroxypropionate) from Oil by Engineered Cupriavidus necator. Bioengineering 2023, 10, 446. https://doi.org/10.3390/bioengineering10040446
Li M, Li W, Zhang T, Guo K, Feng D, Liang F, Xu C, Xian M, Zou H. De Novo Synthesis of Poly(3-hydroxybutyrate-co-3-hydroxypropionate) from Oil by Engineered Cupriavidus necator. Bioengineering. 2023; 10(4):446. https://doi.org/10.3390/bioengineering10040446
Chicago/Turabian StyleLi, Mengdi, Wei Li, Tongtong Zhang, Keyi Guo, Dexin Feng, Fengbing Liang, Chao Xu, Mo Xian, and Huibin Zou. 2023. "De Novo Synthesis of Poly(3-hydroxybutyrate-co-3-hydroxypropionate) from Oil by Engineered Cupriavidus necator" Bioengineering 10, no. 4: 446. https://doi.org/10.3390/bioengineering10040446
APA StyleLi, M., Li, W., Zhang, T., Guo, K., Feng, D., Liang, F., Xu, C., Xian, M., & Zou, H. (2023). De Novo Synthesis of Poly(3-hydroxybutyrate-co-3-hydroxypropionate) from Oil by Engineered Cupriavidus necator. Bioengineering, 10(4), 446. https://doi.org/10.3390/bioengineering10040446
        
