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Article

Identification of Pyroptosis-Related Genes and Immune Landscape in Myocardial Ischemia–Reperfusion Injury

1
Department of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China
2
Institute of Myocardial Injury and Repair, Wuhan University, Wuhan 430071, China
*
Authors to whom correspondence should be addressed.
These authors have contributed equally to this work and share first authorship.
Biomedicines 2025, 13(9), 2114; https://doi.org/10.3390/biomedicines13092114
Submission received: 6 May 2025 / Revised: 11 August 2025 / Accepted: 18 August 2025 / Published: 29 August 2025
(This article belongs to the Special Issue Pathogenesis, Diagnosis, and Treatment of Cardiomyopathy)

Abstract

Background: Cardiomyocyte death is a key factor in myocardial ischemia–reperfusion injury (MI/RI), and the expression patterns and molecular mechanisms of pyroptosis-related genes (PRGs) in ischemia–reperfusion injury are poorly understood. Methods: The mouse MI/RI injury-related datasets GSE61592 and GSE160516 were obtained from the Gene Expression Omnibus database, and differential expression analysis was performed on each to identify differentially expressed genes (DEGs). The DEGs were intersected with the PRGs obtained from GeneCards to identify differentially expressed PRGs in MI/RI. Enrichment analysis identified key pathways, while PPI network analysis revealed hub genes. The expression patterns and immune cell infiltration of hub genes were also investigated. The molecular docking prediction of key genes was performed using MOE software in conjunction with the ZINC small molecular compounds database. Key gene expression was validated in an external dataset (GSE4105), a mouse MI/RI model, and an HL-1 cell hypoxia/reoxygenation model via RT-qPCR. Results: A total of 29 differentially expressed PRGs were identified, which are primarily associated with pathways such as “immune system process”, “response to stress”, “identical protein binding”, and “extracellular region”. Seven key genes (Fkbp10, Apoe, Col1a2, Ppic, Tlr2, Fstl1, Serpinh1) were screened, all strongly correlated with immune infiltration. Seven FDA-approved small molecule compounds exhibiting the highest docking potential with each key gene were selected based on a comprehensive evaluation of S-scores and hydrogen bond binding energies. Apoe, Tlr2, and Serpinh1 were successfully validated across external datasets, the mouse MI/RI model, and the cardiomyocyte H/R model. Conclusions: Apoe, Tlr2, and Serpinh1 may be key genes involved in MI/RI-related pyroptosis. Targeting these genes may provide new insights into the treatment of MI/RI.
Keywords: myocardial ischemia–reperfusion injury; pyroptosis; bioinformatic analysis; immune infiltration; molecular docking myocardial ischemia–reperfusion injury; pyroptosis; bioinformatic analysis; immune infiltration; molecular docking

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MDPI and ACS Style

Zhu, Y.; Zhu, H.; Zhou, J.; Wu, J.; Hu, X.; Li, C.; Cai, H.; Lu, Z. Identification of Pyroptosis-Related Genes and Immune Landscape in Myocardial Ischemia–Reperfusion Injury. Biomedicines 2025, 13, 2114. https://doi.org/10.3390/biomedicines13092114

AMA Style

Zhu Y, Zhu H, Zhou J, Wu J, Hu X, Li C, Cai H, Lu Z. Identification of Pyroptosis-Related Genes and Immune Landscape in Myocardial Ischemia–Reperfusion Injury. Biomedicines. 2025; 13(9):2114. https://doi.org/10.3390/biomedicines13092114

Chicago/Turabian Style

Zhu, Yanfang, Haoyan Zhu, Jia Zhou, Jiahe Wu, Xiaorong Hu, Chenze Li, Huanhuan Cai, and Zhibing Lu. 2025. "Identification of Pyroptosis-Related Genes and Immune Landscape in Myocardial Ischemia–Reperfusion Injury" Biomedicines 13, no. 9: 2114. https://doi.org/10.3390/biomedicines13092114

APA Style

Zhu, Y., Zhu, H., Zhou, J., Wu, J., Hu, X., Li, C., Cai, H., & Lu, Z. (2025). Identification of Pyroptosis-Related Genes and Immune Landscape in Myocardial Ischemia–Reperfusion Injury. Biomedicines, 13(9), 2114. https://doi.org/10.3390/biomedicines13092114

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