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Article
Peer-Review Record

The Molecular Basis for Selectivity of the Cytotoxic Response of Lung Adenocarcinoma Cells to Cold Atmospheric Plasma

Biomolecules 2023, 13(11), 1672; https://doi.org/10.3390/biom13111672
by Mikhail Biryukov 1,2,3, Dmitriy Semenov 1, Nadezhda Kryachkova 1,2,3, Alina Polyakova 1,2,3, Ekaterina Patrakova 1, Olga Troitskaya 1,3, Elena Milakhina 3,4, Julia Poletaeva 1, Pavel Gugin 3, Elena Ryabchikova 1,2, Dmitriy Zakrevsky 3,4, Irina Schweigert 3 and Olga Koval 1,2,3,*
Reviewer 1: Anonymous
Biomolecules 2023, 13(11), 1672; https://doi.org/10.3390/biom13111672
Submission received: 31 October 2023 / Revised: 15 November 2023 / Accepted: 17 November 2023 / Published: 20 November 2023
(This article belongs to the Special Issue Advances in Plasma Bioscience and Medicine)

Round 1

Reviewer 1 Report

Comments and Suggestions for Authors

This paper presents the molecular basis for selectivity of the cytotoxic response of lung adenocarcinoma cells and lung fibroblasts to cold atmospheric plasma. The authors investigated the transcriptome analysis, assessed gene expression and protein levels in A549 and Wi-38 cells following CAP treatment. The authors also presented the endoplasmatic reticulum stress and ER lumens using the molecular methods and electron microscopy. The paper is well structured and add new insights into the mechanism of semi-selective regime for the direct CAP jet treatment of cancer cells. I recommend this paper to be published in the Biomolecules with minor revision.

 

1. Did the authors evaluate the thermal effects of the plasma jet or the temperature of CAP treated medium?

2. Apoptosis is closely related to cytotoxicity and cell cycle modulation. On Page 3 the authors indicated the cell cycle phase distribution. It would be of advantage if the authors also included data on cell apoptosis to further enhance the understanding of the semi-selective regime cytotoxicity.

3. Page 15 line 389, it was observed that A549 cells presented the highest basal level of GPX7. Please include a discussion on the impact of GPX7 on oxidative stress in cells.

4. Page 16 figure 8: all the pictures should add the scale bars for accurate measurement.

Author Response

This paper presents the molecular basis for selectivity of the cytotoxic response of lung adenocarcinoma cells and lung fibroblasts to cold atmospheric plasma. The authors investigated the transcriptome analysis, assessed gene expression and protein levels in A549 and Wi-38 cells following CAP treatment. The authors also presented the endoplasmatic reticulum stress and ER lumens using the molecular methods and electron microscopy. The paper is well structured and add new insights into the mechanism of semi-selective regime for the direct CAP jet treatment of cancer cells. I recommend this paper to be published in the Biomolecules with minor revision.

Answer

We thank the reviewer for appreciation of our work.

Comment 1.  Did the authors evaluate the thermal effects of the plasma jet or the temperature of CAP treated medium? 

 

Answer

The temperature measurement was added to the Methods section (Please, see L. 136-144).

 

Comment 2. Apoptosis is closely related to cytotoxicity and cell cycle modulation. On Page 3 the authors indicated the cell cycle phase distribution. It would be of advantage if the authors also included data on cell apoptosis to further enhance the understanding of the semi-selective regime cytotoxicity.

Answer

We thank the reviewer for this suggestion. We have already presented such data (for the same treatment conditions and cell lines) in our previous paper. Here, we added clarification regarding the type of cell death observed (L. 80-81): Using pan-caspase inhibitor Z-vad we revealed that the caspase-dependent cell death pathways made a major contribution to CAP-dependent cell killing.

 

Comment 3. Page 15 line 389, it was observed that A549 cells presented the highest basal level of GPX7. Please include a discussion on the impact of GPX7 on oxidative stress in cells.

 

Answer

 

Here, we included the addition (L. 422-423 and L426-427): “GPX7 is located in the endoplasmic reticulum and is necessary enzyme involved in the oxidative folding of endoplasmic reticulum proteins [44]. Thus, it can be hypothesized that CAP treatment slightly stimulates the oxidative protein’s folding in ER”.

Comment 4. Page 16 figure 8: all the pictures should add the scale bars for accurate measurement.

Answer

Scale bars were added to the Figure 9 (former Fig. 8).

Author Response File: Author Response.pdf

Reviewer 2 Report

Comments and Suggestions for Authors

The manuscript entitled “The molecular basis for selectivity of the cytotoxic response of lung adenocarcinoma cells to cold atmospheric plasma” by Biryukov et al. investigated the responses to nuclear stress and ER stress constitute the main differences in the sensitivity of tumor and healthy cells to CAP exposure. This manuscript is moderately fine at this stage and needs to include many technical and scientific parts and the comments are listed below.

1.      The author should also present schematic of device showing electrode configurations, used in the study in initial figures.

2.      The author must include physical properties including OES and I/V of plasma used in the study. Plasma properties vary time by time; therefore, it must be presented to validate biological effect. The author should include voltage current profile, plasma gas temperature, OES, RONS profile, Conductivity, ORP, and other physical properties during variable exposures. Even though this kind of device reported previously, author must do it again to validate their findings.

3.      The author must include scale bar in Fig 8. Either it is very weak or absent.

4.      Author should validate overall phenomenon or mechanism using proper ROS scavengers or inhibitors.

5.      The author must make a final concluding mechanism graphic as last figure of this manuscript.

Comments on the Quality of English Language

English language is moderately fine, minor spell check required.

Author Response

Dear Editors,

 

Please, let the reviewers know that we are very grateful for their productive comments on our work. We improve the article as was requested by the reviewers. Two new figures have been added as requested by the reviewers (Figure 1 and Figure 11).

 

Reviewer 2

 

The manuscript entitled “The molecular basis for selectivity of the cytotoxic response of lung adenocarcinoma cells to cold atmospheric plasma” by Biryukov et al. investigated the responses to nuclear stress and ER stress constitute the main differences in the sensitivity of tumor and healthy cells to CAP exposure. This manuscript is moderately fine at this stage and needs to include many technical and scientific parts and the comments are listed below.

 

Comment 1.      The author should also present schematic of device showing electrode configurations, used in the study in initial figures.

Answer

Figure 1 with electrode configurations was added to the manuscript.

 

Comment 2.      The author must include physical properties including OES and I/V of plasma used in the study. Plasma properties vary time by time; therefore, it must be presented to validate biological effect. The author should include voltage current profile, plasma gas temperature, OES, RONS profile, Conductivity, ORP, and other physical properties during variable exposures. Even though this kind of device reported previously, author must do it again to validate their findings.

Answer

Relevant data have been added to the text (Please, see L. 111-118 and L. 126-135) and to Figure 1.

Comment 3.      The author must include scale bar in Fig 8. Either it is very weak or absent.

Answer

Scale bars were added to the Figure 9 (former Fig. 8).

 

Comment 4.      Author should validate overall phenomenon or mechanism using proper ROS scavengers or inhibitors.

Answer

We used N-Acetyl-D-cysteine (NAC) in our work to validate ROS-dependent cell death phenomenon (please, see Fig. 7 b, e). We added a specification in the text that NAC is a ROS scavenger (please, see L383-384 and L. 524-525).

 

Comment 5.      The author must make a final concluding mechanism graphic as last figure of this manuscript.

Answer

Many thanks to the reviewer for this valuable suggestion. We have added Figure 11 with the concluding molecular mechanism of CAP action and the text for this figure (Please, see L. 588-598).

Author Response File: Author Response.pdf

Round 2

Reviewer 2 Report

Comments and Suggestions for Authors

I recommend accepting this manuscript as the author already revised it.

Comments on the Quality of English Language

I recommend accepting this manuscript as the author already revised it.

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