Molecular Phylogeny, Divergence Time Estimation, and Biogeography of Moelleriella (Clavicipitaceae, Hypocreales) with Taxonomic Insights
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Collections and Isolation
2.2. Morphological Observations
2.3. DNA Extraction and PCR Amplification
2.4. Sequence Alignment and Phylogenetic Analyses
2.5. Divergence Time Estimation and Inferring Historical Biogeography
3. Results
3.1. Phylogenetic Analyses
3.2. The Divergence Time Estimation of Moelleriella
3.3. The Historical Biogeography of Moelleriella
3.4. Taxonomy
3.4.1. Moelleriella microstroma X. Y. Wei, Y. S. Lin and J. Z. Qiu, sp. nov. (Figure 4)

3.4.2. Moelleriella phukhiaoensis, Mongkol.,Thanakitp & Luangsa-ard, Fungal Diversity 2016, 78, 1–237 [36] (Figure 5)

3.4.3. Moelleriella chiangmaiensis, Khonsanit, A., Noisripoom, W., Mongkolsamrit, S., Phosrithong, N., and Luangsa-ard, J.J., Mycol Progress 2021, 20, 847–867 [3] (Figure 6)

4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Gene | Primers Name | Sequence (5′-3′) | Annealing Temperature |
|---|---|---|---|
| LSU | LR0Rf | GTACCCGCTGAACTTAAGC | 50 °C [17,18] |
| LR5r | ATCCTGAGGGAAACTTC | ||
| tef1-α | EF1α-983f | GCYCCYGGHCAYCGTGAYTTYAT | 55 °C [19,20] |
| EF1α-2218r | ATGACACCRACRGCRACRGTYTG | ||
| rpb1 | RPB1-Af | CAYCCWGGYTTYATCAAGAA | 50 °C [19,20,21] |
| RPB1-Cr | CCNGCDATNTCRTTRTCCATRTA |
| Species | Strain | Origin | GenBank Accession no. | ||||
|---|---|---|---|---|---|---|---|
| LSU | SSU | tef1-α | rpb1 | rpb2 | |||
| Aciculosporium take | MAFF 241224 | Japan | LC571753 | - | LC572034 | - | LC572048 |
| A. take | TNS-F-60465 | Japan | LC571756 | - | LC572035 | - | LC572049 |
| Albacillium fuzhouense | CGMCC3.27818 | China | PQ425618 | PQ425616 | PQ469143 | PQ469145 | PQ469147 |
| A. fuzhouense | CGMCC3.27815 | China | PQ425619 | PQ425617 | PQ469144 | PQ469146 | PQ469148 |
| Aschersonia badia | BCC 8105 | Thailand | DQ518752 | DQ522537 | DQ522317 | DQ522363 | DQ522411 |
| A. placenta | BCC 7869 | Thailand | JN940907 | JN940988 | - | JN987885 | |
| Balansia henningsiana | GAM 16112 | USA | AY545727 | AY545723 | AY489610 | AY489643 | DQ522413 |
| Claviceps fusiformis | ATCC 26019 | Zimbabwe | U17402 | DQ522539 | DQ522320 | DQ522366 | |
| C. purpurea | S.A. cp11 | Germany | EF469075 | EF469122 | EF469058 | EF469087 | EF469105 |
| Conoideocrella fenshuilingensis | YHH CFFSL2310002 | China | PP178583 | - | PP776168 | PP776158 | - |
| C. fenshuilingensis | YHH CFFSL2310003 | China | PP178584 | - | PP776169 | PP776159 | - |
| Epichloe elymi | C. Schardl 760 | USA | AY986924 | - | AY986951 | DQ000352 | - |
| E. typhina | ATCC 56429 | USA | U17396 | U32405 | AF543777 | AY489653 | DQ522440 |
| Helicocollum surathaniensis | BCC34464 | Thailand | KT222329 | - | KT222337 | - | - |
| Heteroepichloe sichuanensis | SICAUCC 23-0019T | China | OR405917 | OR405932 | OR531518 | - | OR531523 |
| Hymenostilbe aurantiaca | OSC 128578 | USA | DQ518770 | DQ522556 | DQ522345 | DQ522391 | DQ522445 |
| Hypocrella discoidea | BCC 8237 | Thailand | DQ384937 | - | DQ384977 | DQ385000 | DQ452461 |
| Keithomyces carneus | CBS 239.32 | France | NG_057769 | EF468988 | EF468789 | EF468894 | EF468938 |
| Marquandomyces sinensis | ZY 22.064 | USA | OR680607 | - | OR858937 | - | OR842958 |
| Metapochonia bulbillosa | CBS 145.70 | Denmark | AF339542 | AF339591 | EF468796 | - | EF468943 |
| Metarhizium album | ARSEF 2082 | Indonesia | DQ518775 | DQ522560 | DQ522352 | DQ522398 | DQ522452 |
| M. viridulum | BCC 36261 | Thailand | MN781827 | MN781930 | MN781680 | MN781737 | MN781781 |
| Moelleriella africana | P.C. 736 | Ghana | AY986917 | - | AY986943 | DQ000344 | - |
| M. alba | BCC49409T | Thailand | JQ269646 | - | KX254423 | JQ256906 | - |
| M. alba | BCC49492 | Thailand | JQ269645 | - | KX254424 | JQ256905 | - |
| M. basicystis | F183147 | Panama | EU392577 | - | EU392653 | - | - |
| M. basicystis | P.C.374 | Costa Rica | AY986903 | - | AY986928 | DQ000329 | - |
| M. boliviensis | P.C.603 | Bolivia | AY986923 | - | AY986950 | DQ000351 | - |
| M. boehmeriae | SICAUCC 25-0061T | China | PV124784 | - | PV153478 | PV153492 | - |
| M. boehmeriae | SICAUCC 25-0062 | China | PV124785 | - | PV153479 | PV153493 | - |
| M. chiangmaiensis | CGMCC 3.18915 | China | PQ877335 | - | PV505213 | PV505209 | - |
| M. chiangmaiensis | CGMCC 3.18917 | China | PQ877336 | - | PV505214 | PV505210 | - |
| M. chiangmaiensis | BCC60941 | Thailand | MT659361 | - | MT672278 | MT672270 | - |
| M. chiangmaiensis | BCC18029T | Thailand | MT659360 | - | MW091560 | - | - |
| M. chiangmaiensis | BBH33051 | Thailand | MT659362 | - | MT672277 | MT672269 | - |
| M. chumphonensis | BCC47574T | Thailand | JQ269647 | - | KX254421 | JQ256907 | - |
| M. chumphonensis | BBC47575 | Thailand | JQ269648 | - | KX254422 | JQ256908 | - |
| M. cinnamomum | SICAUCC 25-0067T | China | PV124788 | - | PV153484 | PV153494 | - |
| M. cinnamomum | SICAUCC 25-0068 | China | PV124789 | - | PV153485 | PV153495 | - |
| M. citrus | SICAUCC 25-0059T | China | PV124782 | - | PV153476 | PV153490 | - |
| M. citrus | SICAUCC 25-0060 | China | PV124783 | - | PV153477 | PV153491 | - |
| M. disjuncta | J.B.205 | Panama | EU392578 | - | EU392654 | - | - |
| M. epiphylla | P.C. 545 | Bolivia | EU392585 | - | EU392660 | EU392711 | - |
| M. epiphylla | I93-813 | Guyana | EU392583 | - | EU392656 | EU392707 | - |
| M. eucalypti | SICAU 25-0072T | China | PV124778 | PV153470 | PV153486 | ||
| M. eucalypti | SICAU 25-0073 | China | PV124779 | PV153471 | PV153487 | ||
| M. eucalypti | SICAU 25-0074 | China | PV124780 | PV153472 | PV153488 | ||
| M. eucalypti | SICAU 25-0075 | China | PV124781 | PV153473 | PV153489 | ||
| M. evansii | P.C. 627 | Ecuador | AY986916 | - | AY986942 | DQ000343 | - |
| M. flava | BCC60924T | Thailand | KF951146 | - | KX254430 | MT672271 | - |
| M. flava | BCC60925 | Thailand | KF951147 | - | KX254431 | MT672272 | - |
| M. globostromata | YFCC 22109275T | China | OR828408 | - | OR831942 | OR831952 | - |
| M. globostromata | YHH 221010 | China | OR828403 | - | OR831940 | OR831950 | - |
| M. gracilispora | CGMCC3.18989 | China | KC964202 | - | KC964191 | KC964179 | - |
| M. gracilispora | CGMCC3.18990 | China | KC964203 | - | KC964192 | KC964180 | - |
| M. hainanensis | YHH 2303020 | China | OR828400 | - | OR831938 | OR831948 | - |
| M. hainanensis | YFCC 23039277T | China | - | - | OR831939 | OR831949 | - |
| M. insperata | ARSEF 2396T | Philippines | AY518374 | - | DQ070029 | EU392713 | - |
| M. jinghongensis | YFCC 23089312T | China | - | - | OR854253 | OR837093 | - |
| M. jinghongensis | YHH 2308028 | China | OR828410 | - | OR854256 | OR837096 | - |
| M. jinuoana | YHH MJBP2309031T | China | PP178643 | - | PP177170 | PP177160 | - |
| M. jinuoana | YHH MJBP2309032 | China | PP178644 | - | PP177171 | PP177161 | - |
| M. kanchanaburiensis | BCC75980 | Thailand | MT659364 | - | MT672280 | MT843901 | - |
| M. kanchanaburiensis | BCC75981T | Thailand | MT659365 | - | MT672281 | - | - |
| M. libera | P.C. 444 | Mexico | EU392591 | - | EU392662 | EU392714 | - |
| M. libera | P.C. 445 | Mexico | AY986900 | - | AY986925 | DQ000326 | - |
| M. longzhuensis | YHH MLFSL2310012T | China | PP178646 | - | PP177173 | PP177163 | - |
| M. longzhuensis | YHH MLFSL2310013 | China | PP178647 | - | PP177174 | PP177164 | - |
| M. macrostroma | J.B. 115 | Costa Rica | AY986920 | - | AY986947 | DQ000348 | - |
| M. macrostroma | P.C. 605 | Bolivia | AY986919 | - | AY986946 | DQ000347 | - |
| M. madidiensis | P.C. 569 | Bolivia | AY986915 | - | AY986941 | DQ000342 | - |
| M. madidiensis | P.C. 594 | Bolivia | EU392595 | - | EU392666 | EU392718 | - |
| M. microstroma | CGMCC 3.18913T | China | PQ877337 | - | PV505215 | PV505211 | - |
| M. microstroma | CGMCC 3.18914 | China | PQ877338 | - | PV505216 | PV505212 | - |
| M. mollii | I93-901A | Côte D’Ivoire | EU392599 | - | EU392667 | EU392719 | - |
| M. mollii | I93-901C | Côte D’Ivoire | EU392600 | - | EU392668 | EU392720 | - |
| M. multiperitheciata | YFCC 23089307T | China | OR828407 | - | OR832085 | OR837089 | - |
| M. multiperitheciata | YFCC 22109308 | China | OR828406 | - | OR832086 | OR837090 | - |
| M. nanensis | BCC66303T | Thailand | KX298236 | - | KX254427 | MW085940 | - |
| M. nanensis | BCC66305 | Thailand | MW080317 | - | KX254428 | MW085941 | - |
| M. nivea | BCC60891T | Thailand | MW080318 | - | MT672282 | MW085942 | - |
| M. nivea | BCC58543 | Thailand | MT659366 | - | MT672283 | MT672274 | - |
| M. ochracea | IE 1308 | Mexico | EU392601 | - | EU392669 | EU392721 | - |
| M. ochracea | P.C.648 | Honduras | EU392605 | - | EU392671 | EU392723 | - |
| M. oxystoma | BCC 8406 | India | DQ384943 | - | DQ384978 | DQ384993 | - |
| M. oxystoma | BCC 9482 | India | DQ377986 | - | DQ384957 | DQ385013 | - |
| M. phukhiaoensis | HMAS 247937 | China | PV817736 | - | PV832432 | PV832430 | - |
| M. phukhiaoensis | HMAS 247786 | China | PV817737 | - | PV868264 | PV832431 | - |
| M. phukhiaoensis | BCC19769 | Thailand | KT880502 | - | - | KT880506 | - |
| M. phukhiaoensis | BCC19773 | Thailand | KT880503 | - | - | KT880507 | - |
| M. phyllogena | P.C. 555 | Bolivia | EU392610 | - | EU392674 | EU392726 | - |
| M. phyllogena | J.B. 130 | Panama | EU392608 | - | EU392672 | EU392724 | - |
| M. pongdueatensis | BCC31787T | Thailand | KT880500 | - | KX254433 | KT880504 | - |
| M. pongdueatensis | BCC31788 | Thailand | KT880501 | - | KX254434 | KT880505 | - |
| M. pseudothanathonensis | YFCC 22099302T | China | - | - | OR842379 | OR837103 | - |
| M. pseudothanathonensis | YFCC 22099303 | China | - | - | OR842380 | OR837104 | - |
| M. puerensis | YFCC 8615T | China | MW786748 | - | MW815596 | MW815595 | - |
| M. puerensis | YFCC 8626 | China | MW786750 | - | MW815598 | MW815594 | - |
| M. puertoricoensis | BCC 88320 | Puerto Rico | MN954683 | - | MN944389 | - | - |
| M. puertoricoensis | BCC 88322 | Puerto Rico | MN954682 | - | MN944391 | - | - |
| M. pumatensis | BCC 41004 | Vietnam | - | - | HQ722026 | - | - |
| M. pumatensis | BCC 41006 | Vietnam | - | - | HQ722027 | - | - |
| M. puwenensis | YHH 2308029T | China | OR828412 | - | OR854257 | OR831953 | - |
| M. puwenensis | YHH 2308031 | China | OR828414 | - | OR854259 | OR831955 | - |
| M. qionzhongensis | YHH 2303021 | China | OR828399 | - | OR831936 | OR831946 | - |
| M. qionzhongensis | YFCC 23039306T | China | - | - | OR831937 | OR831947 | - |
| M. raciborskii | AFR28 | Ghana | DQ070113 | - | EU392675 | EU392727 | - |
| M. raciborskii | I93-901 | Côte D’Ivoire | EU392611 | - | EU392676 | EU392728 | - |
| M. reineckeana | BCC1713 | Thailand | - | - | DQ384968 | DQ385008 | - |
| M. reineckeana | BCC1765 | Thailand | - | - | DQ384958 | DQ385010 | - |
| M. rhombispora | P.C. 467 | Costa Rica | AY986908 | - | AY986933 | DQ000334 | - |
| M. rhombispora | P.C. 696 | Honduras | EU392618 | - | EU392680 | EU392732 | - |
| M. schizostachyi | CBS 100067 | Thailand | AY986921 | - | AY986948 | DQ000349 | - |
| M. simaoensis | YHH 2210015T | China | OQ621807 | - | OQ623179 | OQ616915 | - |
| M. simaoensis | YHH 2210016 | China | OQ621808 | - | OQ623180 | OQ616916 | - |
| M. sinensis | CGMCC 3.18911 | China | MK412091 | - | - | MK412101 | - |
| M. sinensis | BCC60932 | Thailand | MT659368 | - | - | MT672275 | - |
| M. sloaneae | I94-920 | Guatemala | EU392621 | - | EU392682 | EU392734 | - |
| M. sloaneae | I94-922C | Belize | EU392622 | - | EU392683 | EU392735 | - |
| M. thanathonensis | MFLU:16-2922 | Thailand | - | - | KY646200 | - | - |
| M. turbinata | IMI 352838 | Mexico | EU392625 | - | EU392685 | EU392737 | - |
| M. turbinata | P.C. 678 | Honduras | EU392627 | - | EU392687 | EU392739 | - |
| M. umbospora | P.C. 461 | Mexico | EU392628 | - | EU392688 | EU392740 | - |
| M. umbospora | P.C. 457 | Mexico | AY986904 | - | AY986929 | DQ000330 | - |
| M. yuanyangensis | YFCC 23039314T | China | OR828405 | - | OR831945 | OR837097 | - |
| M. yuanyangensis | YHH 2209001 | China | - | - | OR831944 | OR837098 | - |
| M. yunnanensis | YFCC 23089310T | China | - | - | OR832093 | OR837102 | - |
| M. yunnanensis | YHH 2308001 | China | OR828416 | - | OR832091 | OR837100 | - |
| M. zhongdongii | P.C. 504 | Costa Rica | EU392631 | - | EU392689 | EU392741 | - |
| M. zhongdongii | P.C. 549 | Bolivia | EU392632 | - | EU392690 | EU392742 | - |
| Myriogenospora atramentosa | A.E.G. 96–32 | Cuba | AY489733 | AY489701 | AY489628 | AY489665 | DQ522455 |
| Neoaraneomyces araneicola | DY101711 | China | MW730609 | - | MW753033 | MW753024 | MW753026 |
| N. wuyishanensis | CGMCC3.28307 | China | PQ278803 | PQ286042 | PQ301444 | PQ316536 | PQ334680 |
| N. wuyishanensis | CGMCC3.28308 | China | PQ278804 | PQ286043 | PQ301445 | PQ316537 | PQ334681 |
| Nigelia aurantiaca | BCC 13019 | Thailand | GU979948 | GU979939 | GU979957 | GU979966 | GU979971 |
| Ophiocordyceps brunneipunctata | OSC 128576 | USA | DQ518756 | DQ522542 | DQ522324 | DQ522369 | DQ522420 |
| O. entomorrhiza | KEW 53484 | USA | EF468809 | EF468954 | EF468749 | EF468857 | EF468911 |
| O. gracilis | EFCC 3101 | USA | EF468810 | EF468955 | EF468750 | EF468858 | EF468913 |
| O. irangiensis | OSC 128577 | USA | DQ518760 | DQ522546 | DQ522329 | DQ522374 | DQ522427 |
| O. nutans | OSC 110994 | USA | DQ518763 | DQ522549 | DQ522333 | DQ522378 | - |
| O. sobolifera | KEW 78842 | USA | EF468828 | EF468972 | - | EF468875 | EF468925 |
| O. sphecocephala | OSC 110998 | USA | DQ518765 | DQ522551 | DQ522336 | DQ522381 | DQ522432 |
| O. nigrella | EFCC 9247 | USA | EF468818 | EF468963 | EF468758 | EF468866 | EF468920 |
| Orbiocrella petchii | NHJ 6240 | Thailand | EU369038 | EU369103 | EU369022 | EU369060 | EU369082 |
| O. petchii | NHJ 6209 | Thailand | EU369039 | EU369104 | EU369023 | EU369061 | EU369081 |
| Papiliomyces albastromata | YHH 2307002 | China | OR770504 | OR770494 | PP479838 | PP203269 | PP479841 |
| P. albastromata | YHH 2307003 | China | OR770503 | OR770493 | PP479837 | PP203268 | PP479840 |
| Parametarhizium changbaiense | SGSF125 | China | MN589994 | MN59023 | MN908589 | MN917168 | MT921829 |
| Parametarhizium hingganense | SGSF355 | China | MN061635 | - | MN065770 | MN917170 | - |
| Paraneoaraneomyces sinensis | ZY 22.006 | China | OQ709260 | OQ709248 | OQ719626 | - | OQ719621 |
| P.s sinensis | ZY 22.007 | China | OQ709261 | OQ709249 | OQ719627 | - | OQ719622 |
| Pochonia boninensis | JCM 18597 | Japan | AB709831 | AB758255 | AB758463 | AB758666 | AB758693 |
| Purpureocillium lilacinum | CBS 284.36 | USA | - | AY526475 | EF468792 | EF468898 | EF468941 |
| P. maesotensis | BCC 88441 | Thailand | MN781877 | - | MN781734 | MN781779 | MN781824 |
| Samuelsia chalalensis | P.C. 560 | Bolivia | EU392637 | - | EU392691 | EU392743 | - |
| S. mundiveteris | BCC40021 | Thailand | GU552152 | - | GU552145 | - | - |
| S. mundiveteris | BCC40022 | Thailand | GU552153 | - | GU552146 | - | - |
| S. rufobrunnea | P.C. 613 | Bolivia | AY986918 | - | AY986944 | DQ000345 | - |
| Shimizuomyces paradoxus | EFCC 6279 | Korea | EF469084 | EF469131 | EF469071 | EF469100 | EF469117 |
| S. paradoxus | EFCC 6564 | Korea | EF469083 | EF469130 | EF469072 | EF469101 | EF469118 |
| Yosiokobayasia kusanagiensis | TNS-F 18494 | Japan | JF415972 | JF415954 | JF416014 | JN049890 | - |
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Lin, Y.; Yang, J.; Keyhani, N.O.; Wang, L.; Yao, Y.; Wei, X.; Song, F.; Qiu, Z.; Cai, S.; Guan, X.; et al. Molecular Phylogeny, Divergence Time Estimation, and Biogeography of Moelleriella (Clavicipitaceae, Hypocreales) with Taxonomic Insights. Biology 2026, 15, 739. https://doi.org/10.3390/biology15100739
Lin Y, Yang J, Keyhani NO, Wang L, Yao Y, Wei X, Song F, Qiu Z, Cai S, Guan X, et al. Molecular Phylogeny, Divergence Time Estimation, and Biogeography of Moelleriella (Clavicipitaceae, Hypocreales) with Taxonomic Insights. Biology. 2026; 15(10):739. https://doi.org/10.3390/biology15100739
Chicago/Turabian StyleLin, Yongsheng, Jiao Yang, Nemat O. Keyhani, Luxiao Wang, Yuhang Yao, Xiuyan Wei, Feifei Song, Zhenxing Qiu, Shouping Cai, Xiayu Guan, and et al. 2026. "Molecular Phylogeny, Divergence Time Estimation, and Biogeography of Moelleriella (Clavicipitaceae, Hypocreales) with Taxonomic Insights" Biology 15, no. 10: 739. https://doi.org/10.3390/biology15100739
APA StyleLin, Y., Yang, J., Keyhani, N. O., Wang, L., Yao, Y., Wei, X., Song, F., Qiu, Z., Cai, S., Guan, X., Zhao, L., & Qiu, J. (2026). Molecular Phylogeny, Divergence Time Estimation, and Biogeography of Moelleriella (Clavicipitaceae, Hypocreales) with Taxonomic Insights. Biology, 15(10), 739. https://doi.org/10.3390/biology15100739

