Antimicrobial Resistance and Clinical Outcome Among Hospitalized Bacterial Pneumonia: A Retrospective Cohort Study in Indonesian Tertiary Hospital
Abstract
1. Introduction
2. Results
2.1. Patients’ Characteristics
2.2. Bacterial and Antimicrobial Resistance Profile
2.3. Mortality and Length of Stay
3. Discussion
4. Methods
4.1. Study Design, Settings, and Population
4.2. Data Collection
4.3. Laboratory Methods
4.4. Data Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| CAP | Community-acquired pneumonia |
| HAP | Hospital-acquired pneumonia |
| VAP | Ventilator-associated pneumonia |
| CR-Ab | Carbapenem-resistant Acinetobacter baumannii |
| CR-Kp | Carbapenem-resistant Klebsiella pneumoniae |
| DTR-Psa | Difficult-to-treat Pseudomonas aeruginosa |
| AMR | Antimicrobial resistance |
| WHO | World Health Organization |
| COVID-19 | Coronavirus disease 2019 |
| ATS | American Thoracic Society |
| IDSA | Infectious Disease Society of America |
| MDR | Multidrug-resistant |
| ICD | International classification of disease |
| TB | Tuberculosis |
| AST | Antibiotic susceptibility testing |
| CLSI | Clinical and Laboratory Standards Institute |
| OR | Odds ratio |
| CI | Confidence interval |
| MRCoNS | Methicillin-resistant coagulase-negative Staphylococcus |
| MRSA | Methicillin-resistant Staphylococcus aureus |
| IQR | Interquartile range |
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| CAP (N = 421) n (%) | HAP (N = 210) n (%) | VAP (N = 31) n (%) | |
|---|---|---|---|
| Age (median, IQR) | 57 (43–67) | 60 (46–69) | 53 (38–62) |
| Age ≥ 60 years | 176 (41.8) | 110 (52.4) | 9 (29.0) |
| Male | 230 (54.6) | 131 (62.4) | 16 (51.6) |
| Comorbidities | |||
| Hypertension | 190 (45.1) | 93 (44.3) | 13 (41.9) |
| Diabetes mellitus | 83 (19.7) | 34 (16.2) | 4 (12.9) |
| Chronic kidney disease | 56 (13.3) | 28 (13.3) | 4 (12.9) |
| Chronic lung disease | 71 (16.9) | 9 (4.3) | 1 (3.2) |
| Chronic heart disease | 38 (9.0) | 34 (16.2) | 4 (12.9) |
| Pulmonary tuberculosis | 53 (12.6) | 6 (2.9) | 0 (0) |
| Malignancy | 76 (18.1) | 53 (25.2) | 3 (9.7) |
| Extrapulmonary tuberculosis | 33 (7.8) | 5 (2.4) | 0 (0) |
| Chronic liver disease | 8 (1.9) | 6 (2.9) | 0 (0) |
| Length of hospital stay, days (median, IQR) | 8 (5–12) | 15 (10–26) | 19 (14–40) |
| In-hospital mortality | 125 (29.7) | 101 (48.1) | 18 (58.1) |
| Died (N = 244) n (%) | Survived (N = 418) n (%) | aRR (95% CI) | p-Value | |
|---|---|---|---|---|
| Pneumonia type | ||||
| CAP | 125 (29.7) | 296 (70.3) | Ref | |
| HAP | 101 (48.1) | 109 (51.9) | 1.5 (1.1–1.9) | 0.009 |
| VAP | 18 (58.1) | 13 (41.9) | 1.8 (1.0–3.0) | 0.029 |
| Age ≥ 60 | 117 (39.7) | 178 (60.3) | 1.3 (1.0–1.6) | 0.091 |
| Male | 134 (35.5) | 243 (64.5) | 0.9 (0.7–1.1) | 0.285 |
| Comorbidities | ||||
| Hypertension | 90 (30.4) | 206 (69.6) | 0.7 (0.5–0.9) | 0.020 |
| Diabetes mellitus | 45 (37.2) | 76 (62.8) | 1.2 (0.8–1.6) | 0.398 |
| Chronic lung disease | 17 (21.0) | 64 (79.0) | 0.6 (0.4–1.0) | 0.092 |
| Chronic heart disease | 28 (36.8) | 48 (63.2) | – | – |
| Chronic liver disease | 6 (42.9) | 8 (57.1) | – | – |
| Chronic kidney disease | 32 (36.4) | 56 (63.6) | – | – |
| Malignancy | 66 (50.0) | 66 (50.0) | 1.4 (1.1–1.9) | 0.020 |
| Pulmonary TB | 22 (37.3) | 37 (62.7) | 1.2 (0.7–1.8) | 0.490 |
| Extrapulmonary TB | 16 (42.1) | 22 (57.9) | – | – |
| Resistant pathogens | ||||
| CR-Ab | 45 (48.4) | 48 (51.6) | 1.2 (0.8–1.7) | 0.291 |
| CR-Kp | 34 (42.5) | 46 (57.5) | 1.0 (0.7–1.5) | 0.902 |
| DTR-Psa | 21 (47.7) | 23 (52.3) | 1.0 (0.6–1.6) | 0.979 |
| MRSA | 5 (50.0) | 5 (50.0) | – | – |
| MRCoNS | 12 (29.3) | 29 (70.7) | – | – |
| Length of Stay, Days (Median, IQR) | Adjusted Beta (95% CI) | p-Value | |
|---|---|---|---|
| Pneumonia type | |||
| CAP | 8 (5–12) | ||
| HAP | 15 (10–26) | 5.9 (3.7–8.2) | <0.001 |
| VAP | 19 (14–41) | 10.9 (6.0–15.8) | <0.001 |
| Age | |||
| <60 | 9 (6–17) | Ref | |
| ≥60 | 10 (6–20) | −0.2 (−2.2–1.8) | 0.833 |
| Gender | |||
| Male | 10 (6–17) | −1.1 (−3.1–0.8) | 0.256 |
| Female | 10 (6–21) | Ref | |
| Comorbidities | |||
| Hypertension | 10 (7–20) | – | – |
| Diabetes mellitus | 10 (6–20) | 0.9 (−1.6–3.4) | 0.489 |
| Chronic lung disease | 7 (5–12) | −2.2 (−5.2–0.8) | 0.256 |
| Chronic heart disease | 10 (7–17) | – | – |
| Chronic liver disease | 9 (7–13) | – | – |
| Chronic kidney disease | 9 (6–17) | – | – |
| Malignancy | 10 (6–17) | – | – |
| Pulmonary TB | 6 (5–11) | −3.7 (−7.1–(−0.2)) | 0.036 |
| Extrapulmonary TB | 9 (5–20) | – | – |
| Resistant pathogens | |||
| CR-Ab | 20 (10–28) | 4.3 (1.4–7.2) | 0.004 |
| CR-Kp | 12 (6–27) | 2.6 (−0.4–5.5) | 0.095 |
| DTR-Psa | 24 (12–45) | 12.0 (8.0–16.1) | <0.001 |
| MRSA | 10 (5–13) | – | – |
| MRCoNS | 10 (7–15) | – | – |
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Santoso, P.; Muliandini, G.R.; Izzati, S.D.; Alexandra, S.; Kulsum, I.D.; Andriyoko, B.; Sugianli, A.K. Antimicrobial Resistance and Clinical Outcome Among Hospitalized Bacterial Pneumonia: A Retrospective Cohort Study in Indonesian Tertiary Hospital. Antibiotics 2026, 15, 582. https://doi.org/10.3390/antibiotics15060582
Santoso P, Muliandini GR, Izzati SD, Alexandra S, Kulsum ID, Andriyoko B, Sugianli AK. Antimicrobial Resistance and Clinical Outcome Among Hospitalized Bacterial Pneumonia: A Retrospective Cohort Study in Indonesian Tertiary Hospital. Antibiotics. 2026; 15(6):582. https://doi.org/10.3390/antibiotics15060582
Chicago/Turabian StyleSantoso, Prayudi, Ghyna Ravifa Muliandini, Saniya Dhafarina Izzati, Sonya Alexandra, Iceu Dimas Kulsum, Basti Andriyoko, and Adhi Kristianto Sugianli. 2026. "Antimicrobial Resistance and Clinical Outcome Among Hospitalized Bacterial Pneumonia: A Retrospective Cohort Study in Indonesian Tertiary Hospital" Antibiotics 15, no. 6: 582. https://doi.org/10.3390/antibiotics15060582
APA StyleSantoso, P., Muliandini, G. R., Izzati, S. D., Alexandra, S., Kulsum, I. D., Andriyoko, B., & Sugianli, A. K. (2026). Antimicrobial Resistance and Clinical Outcome Among Hospitalized Bacterial Pneumonia: A Retrospective Cohort Study in Indonesian Tertiary Hospital. Antibiotics, 15(6), 582. https://doi.org/10.3390/antibiotics15060582

