2.2.1. Total Viable Count
The results of TVC number in samples of raw beef treated with chitosan coatings with the addition of basil (
Ocimum basilicum L.) essential oil are presented in
Table 2 and indicate a significant impact of the treatment on the microbiological stability of the meat during storage. All samples had a similar initial TVC number, in the range of 2.3–2.6 log CFU/g. In the control sample, the fastest increase in TVC was observed, which was expected given the high water and nutrient content that favors the development of microorganisms in raw meat. Compared to the control, the application of a chitosan coating (CH) caused a statistically significant (
p < 0.05) reduction in the number of TVC after the fourth storage day, which confirms the antimicrobial effect of chitosan, probably as a consequence of its polycationic nature, which allows interaction with microbial cells and leads to their destabilization [
38].
After 8 days of storage, the control sample reached 5.95 log CFU/g, which is very close to the defined regulatory threshold for fresh meat specified in the International Commission on Microbiological Specifications for Foods (ICMSF) standard [
39] and the Chinese national standard GB 4789.2-2022 [
40], according to which TVC values higher than 6.0 log CFU/g indicate a microbiologically unacceptable product [
11]. During the same period, the application of OBEO further reduced the total bacterial count: at a concentration of 0.25% it was 5.15 log CFU/g, at 0.5% it was 5.09 log CFU/g, while at 1% the lowest value of 4.21 log CFU/g was recorded, clearly confirming a pronounced dose-dependent effect. Statistically, the application of nanoparticles at concentrations of 0.5% and 1% had the same effect on the same day of storage.
During further storage, a clear difference between the effects of free CH-OBEO and CH-OBNPs systems on the TVC values was observed. This difference became most pronounced at the end of the storage period, when the statistically significant largest reduction was recorded in the treatment with OB NPs 1% with a value of 6.55 log CFU/g, which represents a decrease of approximately 1.5 log units compared to the control sample. Based on the obtained TVC values, the application of CH-OBEO can significantly extend the microbiological acceptability of beef, with the storage period extending to approximately 16 days compared to the control.
The observed difference in antimicrobial efficacy between free CH-OBEO and CH-OBNPs systems can be explained, most likely, by the physicochemical properties of the nanoparticles, particularly their particle size and polydispersity index (PDI). Smaller particles have a higher surface area, which promotes closer contact with microbial cell membranes and enhances the delivery of bioactive compounds from the essential oils [
41]. At the same time, their reduced size facilitates penetration through microbial structures and biofilms, contributing to improved antimicrobial performance [
42].
In addition, low PDI values reflect a more uniform particle size distribution, resulting in better dispersion and a more consistent release of the encapsulated essential oil components. Such systems tend to exhibit more stable antimicrobial activity, whereas systems with higher PDI may be less effective due to the presence of larger particles with limited interaction potential and smaller ones that are more prone to aggregation [
43,
44].
Numerous studies confirm that nanoencapsulation of essential oils is a more effective approach to controlling TVC in meat, compared to the application of free essential oils. In the study of Đorđević et al. [
45], chitosan coatings with nanoencapsulated essential oil of
Satureja montana showed a more pronounced inhibitory effect on microbial growth in beef during 20 days of storage, with a decrease in TVC by several log units compared to the control. Similar results were obtained with minced meat products. Homayounpour et al. [
46] showed that a nano-liposomal form of garlic essential oil more effectively reduces TVC and extends the shelf life of hamburgers compared to the free oil. Also, Baghi et al. [
47] found that active packaging with trans-cinnamaldehyde nanoemulsions significantly slows down the growth of bacteria in minced meat, with the effectiveness also depending on the structure of the packaging system. Accordingly, Zhang et al. [
43] showed that chitosan nanocapsules with caraway essential oil provided lower TVC values in lamb meat compared to free components, especially in the later stages of storage. Additionally, chitosan-based nanoparticles with incorporated
Citrus reticulata L. essential oil reduced the presence of TVC in pork tenderloins by about 25% [
48]. Incorporation of thyme and clove essential oils in chitosan–Zn nanosystems enabled a reduction in TVC to 3.75 log CFU/g and 4.20 log CFU/g in beef burgers, respectively [
49]. Cellulosic NPs containing 2% propolis extract in the chitosan system were also effective, reducing the number of TVC in beef from approximately 10 to 6 log CFU/g [
50].
2.2.2. Pseudomonas spp.
Pseudomonas spp. represent the dominant spoilage microorganisms responsible for the deterioration of raw meat under aerobic storage conditions, as they are well adapted to low temperatures and utilize meat proteins as an energy source [
51]. The results of the impact of the application of CH-OBEO and CH-OBNPs are shown in
Table 3. The obtained results indicate that all chitosan coating treatments significantly (
p < 0.05) limited the growth of
Pseudomonas spp. after the fourth day of storage. Edible coatings may reduce oxygen availability at the meat surface, thereby altering the oxidation–reduction potential and creating less favorable conditions for aerobic microorganisms such as
Pseudomonas spp. compared to the uncoated control [
52].
At the beginning of storage, the microbial load by
Pseudomonas spp. was similar in all samples (2.33–2.39 log CFU/g). The control sample showed a continuous increase in the number of
Pseudomonas spp. from 2.35 log CFU/g at the beginning to 7.80 log CFU/g at day 20, thus exceeding the critical microbiological acceptability limit of 7 log CFU/g, according to The International Commission on Microbiological Specifications for Foods (ICMSF) standard [
39,
53]. In comparison, the CH sample reached 6.95 log CFU/g after 20 days, indicating a statistically significant (
p < 0.05) slowdown in the growth of
Pseudomonas spp., but not enough to prevent them from reaching almost unacceptable levels.
On the eighth day of storage, there was no statistically significant difference in the number of
Pseudomonas spp., regardless of the treatment with free or nanoencapsulated oil and their concentrations. After 12 days of storage, a clear difference in the effect of these two forms of essential oils was observed, and on the 20th day, the number of
Pseudomonas spp. in samples with free essential oil were 6.57, 6.58 and 6.27 log CFU/g for OBEO 0.25, 0.5 and 1% respectively—thus below the limit of 7 log CFU/g, which means that the meat was still microbiologically acceptable. This confirms that OBEO in a chitosan coating has a suppressive effect on the growth of
Pseudomonas spp., most likely due to the presence of linalool and epi-α-cadinol, as the main components which were detected in the OBEO used as published in the study by Đorđević et al. [
54]. The free form of thyme and oregano essential oils in chitosan systems showed effective inhibition of Pseudomonas spp. growth, reducing the number from 6.5 log CFU/g to almost 0.5 log CFU/g, after 30 days of storage at 4 °C [
55].
An even more pronounced effect was achieved with the use of nanoencapsulated essential oil (OBNPs). The CH-OBNPs 1% treatment showed an increase in the bacterial count from 2.35 to only 5.89 log CFU/g after 20 days, while lower concentrations (0.25% and 0.5%) recorded 6.19 and 5.90 log CFU/g, respectively. This means that all CH-OBNPs treatments remained within microbiologically acceptable limits throughout the entire storage period, while the control became unacceptable between days 12 and 16.
A direct comparison of the effects of free and nanoencapsulated essential oil on the control of
Pseudomonas spp. growth in fresh beef was presented in the study by Đorđević et al. [
45], where it was found that the nanoencapsulated form of the
Satureja montana L. essential oil provided better microbiological stability of the meat compared to the free form, which is in agreement with the results obtained in this study. Other studies also confirm that the nanoencapsulated form of an essential oil is better at reducing the number of
Pseudomonas spp., for example, in fresh turkey filets treated with chitosan nanoparticles with incorporated essential oils of
Zataria multiflora and
Bunium persicum, a reduction in the number of
Pseudomonas spp. of about 2 log CFU/g was recorded after 18 days of storage [
56]. In addition, the system combining chitosan nanoparticles with the essential oil of
Satureja khuzestanica showed an even more pronounced antimicrobial effect, reducing the final number of these bacteria by as much as 5 log units compared to the control [
56]. Additionally, the application of a chitosan nanoemulsion enriched with thyme essential oil resulted in a significant reduction in the population of
Pseudomonas spp. in fresh pork meat, where after 12 days of storage at +4 °C a reduction of approximately 20% was recorded [
57]. On the other hand, in ham pieces, the addition of a nanoemulsion with the addition of
Eugenia brejoensis essential oil at a concentration of 1% did not prove successful in reducing the number of
P. fluorescens [
58]. Other types of nanoparticles, such as Zn with the addition of propolis extract in a chitosan matrix, significantly inhibited the growth of
Pseudomonas in beef, reducing the initial count by more than half, from 8.5 log CFU/g to almost 4 log CFU/g [
50]. Chitosan nanoparticles with incorporated aloe vera gel in mutton had a statistically significant effect on reducing the number of
Pseudomonas aeruginosa (3.68 log CFU/g), compared to the untreated sample (4.68 log CFU/g), after 12 days of refrigerated storage [
59].
2.2.3. Lactic Acid Bacteria
The change in the number of lactic acid bacteria (LAB) in fresh beef meat during 20 days of storage is shown in
Table 4 and clearly indicates a significant influence of the applied treatments—whether the presence of the chitosan coating or the addition of free or nanoencapsulated
Ocimum basilicum L. essential oil. Initially, the number of LAB was similar in all samples (about 1.5 log CFU/g). The control sample recorded the fastest increase—from 1.48 log CFU/g at the beginning to 6.35 log CFU/g after 20 days, which was expected because in the absence of coating and antimicrobial components, LAB grow unrestricted. The addition of CH significantly affected the reduction in the number of LAB, so from the second day to the end of storage, a statistically significant difference in their number was observed, compared to the control (
p < 0.05).
The application of the CH-OBEO induced a concentration-dependent inhibitory effect on LAB growth. Coatings containing OBEO at 0.25% and 0.5% provided moderate reductions compared to the control; however, the highest tested concentration CH-OBEO 1% exerted higher suppression, with LAB counts remaining lower throughout the storage period. This dose-dependent response is consistent with findings reported for other essential oils incorporated into chitosan-based coatings applied to beef. Gaba et al. [
55] demonstrated that chitosan films enriched with oregano and thyme essential oils at 0.5% and 1% inhibited spoilage bacteria in refrigerated beef, with the shelf life extended by approximately 10 days compared to chitosan. The relatively modest effect observed at lower OBEO concentrations in the present study may be attributed to the volatility of phenolic compounds in basil EO including linalool and eugenol which are susceptible to evaporation and interaction with meat proteins, thereby reducing their bioavailability at the meat surface when applied in free form [
60].
This limitation of free EO delivery was clearly addressed by the nanoencapsulated formulations. The CH-OBNPs treatments, particularly at higher concentrations, demonstrated sustained antimicrobial activity across the entire storage period, with CH-OBNPs 1% achieving final LAB counts of 5.60 log CFU/g, lower than all free EO treatments at equivalent concentrations. This is in agreement with the previous results of the use of free and nanoencapsulated
Satureja montana L. EO on beef stored at 4 °C for 20 days where CNP-enriched coatings exerted more pronounced and prolonged antimicrobial effects against LAB and other tested microorganisms compared to free EO at the same concentration levels [
45]. The incorporation of 2% propolis extract into cellulose nanoparticles and the addition to chitosan films enabled a reduction in the LAB population in beef after 14 days of storage [
50].
2.2.4. Psychrotrophic Bacteria
Initial psychrotrophic bacterial counts were similar in all treatment groups, ranging from approximately 2.35 to 2.56 log CFU/g (
Table 5) consistent with the expected microbiological quality of freshly processed beef 48 h post-mortem and previously reported baseline psychrotrophic counts of 2 log CFU/g on fresh meat [
61]. Throughout refrigerated storage, psychrotrophic bacteria increased progressively in all samples with the most rapid and pronounced growth, reaching approximately 7.84 log CFU/g by day 20 in the control. The chitosan treatment provided a modest delay in psychrotrophic growth compared to the control, confirming the limited antimicrobial capacity of chitosan. The incorporation of OBEO into the chitosan matrix produced significantly lower psychrotrophic counts than the control or chitosan, with the inhibitory effect being dose-dependent. CH-OBEO 1% showed the most effective suppression, reaching approximately 6.85 log CFU/g at day 20, compared to 7.84 log CFU/g in the control. This is in agreement with Gaba et al. [
55], who demonstrated that chitosan films enriched with 1% essential oil from oregano and thyme significantly inhibited spoilage bacteria on refrigerated beef stored for 30 days. The antimicrobial efficacy of OBEO with its major bioactive constituents, linalool, eugenol, and 1,8-cineole [
54] has already been proven in meat samples [
62].
CH-OBNPs demonstrated better performance compared to the corresponding CH-OBEO treatments, particularly towards the end of the storage period. At day 16, sample CH-OBNPs 1% achieved counts approximately 1.37 log CFU/g lower than the uncoated control, and by day 20, it maintained the lowest psychrotrophic count of all treatment groups (~6.67 log CFU/g). Such efficacy of the nanoparticle formulations can probably be attributed to the sustained, controlled release of bioactive compounds from the NPs, which prolongs the antimicrobial effect on the meat surface over extended storage. Moadab et al. [
63] reported that chitosan coatings containing
Eryngium campestre essential oil nanoemulsions significantly suppressed psychrotrophic counts compared to control samples after 12 days at 4 °C. A similar effect of nano-encapsulation was previously reported for beef treated with chitosan enriched with free and nanoencapsulated
Satureja montana L. essential oil, where the application of nanoparticle-loaded coatings showed lower psychrotrophic counts throughout 20 days of chilled storage compared to essential oil treatments at equivalent concentrations [
45]. The application of chitosan nanoparticles with cumin essential oil reduced the number of psychrotrophic bacteria after 7 days of storage from 6.5 log CFU/g to 6 log CFU/g in mutton, which is another confirmation of the effectiveness of chitosan nanoparticles enriched with essential oils [
43]. A pronounced ability to inhibit the growth of psychrotrophic bacteria in beef was observed with the use of chitosan films with the addition of Zn nanoparticles enriched with propolis extract (2%), with approximately 4.5 log CFU/g recorded, which is half as much as the control (about 9 log CFU/g) after 14 days of storage [
50].
Compared to the total viable count, it can be noticed that over time psychrotrophic bacteria consistently approached or slightly exceeded the TVC. This could be expected because of the selective advantage that psychrotrophs have under refrigeration conditions. As storage progresses, the psychrotrophs dominate the total viable population, effectively making psychrotrophic enumeration a more sensitive indicator of quality deterioration in chilled meat than total mesophilic counts alone [
51].
Taken together, the data follows the antimicrobial hierarchy across the treatment groups: C < CH < CH-OBEO 0.25% ≈ CH-OBEO 0.5% < CH-OBEO 1% < CH-OBNPs 0.25% ≈ CH-OBNPs 0.5% < CH-OBNPs 1%, with statistically significant differences between groups (p < 0.05) at most time points. The results confirm that combining chitosan with OBEO, particularly in the nanoencapsulated form, represents an effective strategy for retarding psychrotrophic proliferation and extending the microbiological shelf life of fresh beef under aerobic refrigerated storage.