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Article

Reproductive Characteristics of the Flat Oyster Ostrea denselamellosa (Bivalvia, Ostreidae) Found on the Southern Coast of South Korea

Marine Bio-Resources Research Unit, Korea Institute of Ocean Science & Technology (KIOST), Busan 49111, Korea
*
Author to whom correspondence should be addressed.
J. Mar. Sci. Eng. 2022, 10(9), 1326; https://doi.org/10.3390/jmse10091326
Submission received: 25 August 2022 / Revised: 5 September 2022 / Accepted: 6 September 2022 / Published: 19 September 2022
(This article belongs to the Section Marine Aquaculture)

Abstract

:
In this study, we investigated the reproductive pattern of the commercially and ecologically important species, Ostrea denelamellosa, to inform stock management strategies in South Korea. Prior to the reproduction experiment, the complete mitochondrial (mt) genome of the flat oyster, Ostrea denselamellosa, was analyzed using next-generation sequencing technology. Then, to determine the reproductive pattern of Ostrea denselamellosa, we investigated monthly changes in the gametogenesis, reproductive cycle, and sex ratio from January to October 2021 in females. The total length of the mt genome sequence of O. denselamellosa was 16,225 bp and contained 37 genes (13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes). Molecular phylogenetic comparison with 20 known species of Pteriomorphia showed that O. denselamellosa belongs to the family Ostreidae. In addition, O. denselamellosa clustered together with the O. denselamellosa Chinese strain, with a bootstrap value of 100%. Histological analysis indicated a discrepancy in gamete development of O. denselamellosa with synchronous maturation of oocytes and asynchronous development of spermatozoa in gonads. The spawning activity occurred between May and September with a temperature range gap of 6.5 °C. The spawning activity occurred from May when the temperature reached 16.7 °C until September when the temperature dropped below 23.2 °C. Furthermore, sex ratio bias was observed. This is the first study to report the complete mt genome sequence and examine the reproductive pattern in native O. denselamellosa in South Korea. Overall, these findings will help enhance the knowledge for the management and sustainable fishery of endangered oyster species including O. denselamellosa in the South Sea of Korea.

1. Introduction

Oysters represent economically important species as marine resources in fishery and aquaculture and are ecologically important because they provide critical ecosystem services as habitat engineers, calcifiers, filter-feeders, and reef-builders [1]. The annual production of global oyster aquaculture is approximately 5.9 million metric tons [2]. However, oyster populations have declined owing to pollution, overfishing, habitat loss, and diseases, resulting in adverse effects such as reduced water quality and loss of biodiversity [3,4,5,6].
The flat oyster Ostrea denselamellosa is commonly found in subtidal mudflats off the southwestern and southern coastlines of Korea [7,8] as well as in southern Japan and China [9,10]. Presently, O. denselamellosa is considered an important bivalve resource in coastal shellfish fisheries [10]. However, natural populations of O. denselamellosa have declined dramatically due to anthropogenic effects, including over-exploitation and environmental pollution [11], thus the population density of O. denselamellosa is known to be low [10]. However, studies on O. denselamellosa have mainly focused on cultural methods and biological characteristics [11,12]. Therefore, understanding genetic diversity and population density are essential for the management and sustainable use of oyster resources. In this regard, mitochondrial genomes (mt genomes) have been extensively studied as molecular markers for species identification, population genetics, conservation biology, and diverse evolutionary studies [13,14,15]. In particular, sequencing technology for complete animal mt genomes has been used for phylogenetic reconstruction compared to using partial sequences. Therefore, complete mt genomes can be applied to genetic molecular marker-based species identification, population genetics, conservation biology, and diverse evolutionary studies. A previous study reported the complete mt genome of O. denselamellosa collected from Jiaonan, Shandong Province, China [16]. However, there is no information on the complete mt genome of O. denselamellosa native oysters in South Korea.
Generally, the reproductive patterns of oysters in the Ostrea genus involve spermcasting, which is the internal cross-fertilization of retained eggs via the release, dispersal, and uptake of free spermatozoa [17,18]. In addition, O. denselamellosa is viviparous and deposits its larvae directly into the water column after a brooding period with fertilized eggs inside their body cavity [11,19]. In this regard, for achieving the sustainable management and use of oyster resources, many environmental factors must be considered. Various reproductive characteristics and strategies of marine bivalves, including oysters, are controlled by environmental factors such as water temperature and food availability [20,21,22,23]. In particular, water temperature is the main factor that controls various physiological processes, including the reproduction cycle in bivalves [21,24,25,26]. However, the characteristics of the reproductive biology of the native oyster in South Korea have not been elucidated. Therefore, as the initial step, we determined the complete mt genome sequence and phylogenetic relationships of native O. denselamellosa collected from South Korea. In addition, we investigated the gametogenesis, reproductive cycle, and sex ratio of O. denselamellosa.

2. Materials and Methods

2.1. Sampling Collection

The O. denselamellosa was purchased from a local fish market in Buan, South Korea, on 20 December 2020 and maintained in culture cage nets at a depth of 2 m from the surface at the cage farm at the Tongyoung marine living resources station, Korea Institute of Ocean Science and Technology (KIOST), Tongyeong, Gyeongsangnam-do, South Sea of Korea (Figure 1). Live O. denselamellosa were collected every month (20 oysters/month) from January 2021 to October 2021. At the time of sampling, the surface water temperature and salinity ranged between 11.4 and 26.1 °C and 29.0 and 33.4 practical salinity units, respectively (Figure 2). All animal experimental protocols were performed according to the Guidelines of the Institutional Animal Care and Experimental Committee and were approved by the KIOST.

2.2. DNA Extraction and DNA Sequencing

Genomic DNA was extracted from the muscle tissue of oysters using the DNeasy Blood and Tissue Kit (Qiagen, Valencia, CA, USA) following the manufacturer’s protocol. The quantity and quality of isolated DNA were analyzed and measured at 230, 260, and 280 nm using a NanoDrop One spectrophotometer (Thermo Fisher Scientific, Madison, WI, USA). Whole-genome sequencing was performed using an Illumina NovaSeq 6000 platform (Illumina, San Diego, CA, USA) at the National Instrumentation Center for Environmental Management, Seoul, South Korea. The complete mt genome of O. denselamellosa was assembled and annotated using MitoZ [27].

2.3. Sequence Alignment and Phylogenetic Analysis

The complete mt genomes of 20 Pteriomorphia species were downloaded from the GenBank database and used for constructing a phylogenetic tree. The blacklip abalone Haliotis rubra (Gastropoda) mt genome was chosen as the outgroup (Table 1). The amino acid sequences of 12 protein-coding genes (PCGs) for each mt genome were aligned using the ClustalW algorithm in MEGA software (ver. 10.0.1; Center for Evolutionary Medicine and Informatics, Tempe, AZ, USA). To establish the best-fit substitution model for phylogenetic analysis, the model with the lowest Bayesian Information Criterion and Akaike Information Criterion scores was estimated using a maximum-likelihood (ML) analysis. According to the results of the model test, the ML phylogenetic analyses were performed using the LG + G + I model in the MEGA software. The support for nodes was calculated using 1000 bootstrap replicates.

2.4. Histological Analysis

A total of 197 oysters were collected including 180 individuals from January 2021 to September 2021 and 17 individuals in October 2021. The monthly shell length (SL) and total weight (TW) were recorded during the experimental period. After oysters were anesthetized using 2 mL L−1 propylene phenoxetol, the tissues were dehydrated in increasing ethanol concentrations, clarified in xylene, and embedded in paraffin. Sections (5 μm-thick) were stained with hematoxylin–eosin for observation under a light microscope (DM 100; Leica, Wetzlar, Germany) [28]; the images were captured using a digital camera (DFC 290; Leica). The gonads were classified into five stages according to a previous study [29], with slight modifications including (1) undifferentiated or resting gonad, (2) early gametogenesis, (3) advanced gametogenesis, (4) mature gonad, and (5) spawned gonad. Classification of sex categories (male, female, hermaphrodite, or undifferentiated) was recorded from January 2021 to October 2021.

3. Results and Discussion

In this study, we sequenced the complete mt genome of O. denselamellosa and analyzed its phylogenetic position (Table 2 and Figure 3). The length of the complete mt genome of O. denselamellosa was 16,275 bp (GenBank number: ON964460). This size is similar to that of O. denselamellosa (16,277 bp) collected from Jiaonan, Shandong Province, China [16] but shorter than those of Ostrea edulis (European flat oyster; 16,320 bp) and Ostrea lurida (Olympia oyster; 16,344 bp) [30,31]. The complete mt genome of O. denselamellosa contained 13 PCGs, 2 rRNA genes, and 23 tRNAs (Table 2 and Figure 3A), whereas 12 PCGs (without atp8), 2 rRNA genes, and 23 tRNA genes were previously identified in the Chinese strain [16]. Possible strain-specific differences may be due to compositional differences. For example, the A + T and G + C compositions of 13 PCGs in the mt genome of O. denselamellosa were 59.89% and 40.11%, respectively, whereas these compositions in all sequences were 60.59% and 39.41%, respectively. In particular, the ratio of A + T nucleotides in the mt genome of O. denselamellosa is similar to that of the O. denselamellosa Chinese strain (61%), whereas the ratio of A + T nucleotides is lower than those of the congeneric species O. edulis (64.9%) and O. lurida (65%) [16,30,31]. In O. denselamellosa, the ten PCGs initiate with the start codon ATG/ATA, whereas atp6 and nd4l have the start codon GTG. Most of the PCGs (11 of 13 genes) terminate with TAA/TAG, whereas atp6 terminates with CGT. In contrast to O. denselamellosa, ten PCGs initiate with the start codon ATG/ATA, whereas atp6 and nd4l have the start codon GTG in the O. denselamellosa Chinese strain. Moreover, most PCGs (11 of 12 genes) terminate with TAA/TAG, whereas cox3 terminates with T– –. Therefore, comparative mt genome analysis of O. denselamellosa revealed the species and region-specific differences in the mt genomes of Ostrea species including the two strains of O. denselamellosa. Furthermore, minor differences in sequence identity may contribute to their adaptability to different environmental conditions; however, the adaptability-related potential requires further analysis. Furthermore, the region-specific speciations of O. denselamellosa could provide information about how reproductive strategies differ depending on their adaptation to the environment.
In this study, the overall topology was consistent with previous phylogenetic results [30]. The molecular phylogenetic tree based on 13 PCG sequences showed that the O. denselamellosa Korean strain clustered together with three Ostrea species (O. denselamellosa Chinese strain, O. edulis, and O. lurida) (Figure 3B). In particular, O. denselamellosa clustered together with the O. denselamellosa Chinese strain with a bootstrap value of 100% (Figure 3B), indicating that O. denselamellosa is a congeneric species to the O. denselamellosa Chinese strain. Taken together, the newly completed mt genome of O. denselamellosa and molecular phylogeny will be useful in substantiating the molecular phylogeny for further evolutionary studies in relation to the conservation of Olympia oysters.
The histological features of the development process of oyster gonads are shown in Figure 4, with the SL ranging from 70.1 to 108.2 mm and the TW ranging from 85.4 to 240.4 g during the 10 months. In the resting stage, the undifferentiated stage of the gonads is characterized by the absence of germ cells (Figure 4A). In the early gametogenesis stage, the oogonium and early vitellogenic oocytes or spermatogonia can be observed in follicles in the gonad (Figure 4B). In the advanced gametogenesis stage, the gonad follicles are filled with vitellogenic oocytes in a region at the edge of the follicles and spermatogonia and filled with spermatocytes in the center of the follicles (Figure 4C). In the mature gonad stage of males, females, and hermaphrodites, the cluster of spermatocytes and spermatozoa can be observed in the gonads of males, the follicles of gonads are filled with mature oocytes characterized by a discrete nucleus in females, and mixed mature gonads of males and females are observed in hermaphrodites (Figure 4D–F). In the spawned gonad stage, the gonad follicles of the spawn indicated that ovulation was released and oocytes were resorbed, smaller and relict spermatozoa were found, and the follicles were ruptured (Figure 4G). In hermaphrodites, the production of spermatozeugmata in multiple batches will enhance the success rate of fertilization when a batch of spermatozeugmata fails to reach females [18]. In this study, histological analyses indicated a discrepancy in gamete development in O. denselamellosa with a synchronous maturation of oocytes and an asynchronous development of spermatozoa in the gonads (Figure 4D,F). Previous studies have suggested that the production of spermatozeugmata by asynchronous gamete development will enhance fertilization success [18]. In O. denselamellosa, the discrepancy in gamete development may represent one of the strategies for successful fertilization before a brooding duration with fertilized eggs inside the body cavity and release of the larvae [11,19].
In this study, the spawned gonads of O. denselamellosa were found from May onwards, dominating the first stage and mature gametogenesis when the water temperature reached 16.7 °C. In October, almost all individuals spawned gonads when the water temperature dropped below 23.2 °C. The frequency distribution of the gonad stage indicated that the spawning activity occurred from May to September (Figure 5). Based on the observations of the spawned gonad stage and resting stage in October, it was estimated that the stage of spawning activity from November to December was included in the resting period since previous studies suggested that the resting periods of gonad mature stages in O. denselamellosa occur from October to March in Goheung, along the southern coastline of Korea [32]. Water temperature is one of the key environmental factors that control the rate of gametogenesis in oysters [33,34]. In this study, the annual gametogenesis of O. denselamellosa can be described as the development of gametes in spring when the water temperature rises, maturation and spawning in summer, and resting in fall and winter when the water temperature decreases in Tongyeong, Korea (Figure 6). The duration of spawning activity of O. denselamellosa is similar to that of the Pacific oyster Crassostrea gigas in the coastal bays (Jaran Bay and Hansan-Koje Bay) of Korea from May to September [33,35]. The time of initiation of the spawning activity of O. denselamellosa is two months earlier than that of Saccostrea kegaki on Jeju Island from July to October [36]. The changes in gametogenesis of O. denselamellosa are similar to those in C. gigas in which the spawning activity occurs from June to September, with the spent condition and no gametes forming from October to February in Gosung Bay in Korea [34].
The sex ratio during the study period is shown in Figure 6. The sex ratio of O. denselamellosa with an SL ranging from 70.1 to 108.2 mm was skewed toward females, which were most dominant accounting for approximately 75–80% of the total population from January to March, whereas hermaphrodites accounted for approximately 75–95% of the total population from April to October. Generally, broadcast oysters first mature as males and later change to females as they age [37]. The spermcasting oyster O. edulis has a highly skewed male-to-female ratio of 6:1 at an SL of approximately 50–70 mm [38,39]. The age of O. denselamellosa was estimated at approximately 2 years based on previous studies that reported that oysters reached approximately 80 mm in SL at the age of 2 years [40]. Therefore, the higher proportions of females and hermaphrodites than males in O. denselamellosa populations may be due to the development of relatively large oysters. The sex change patterns according to the lifespan during the present study were not clarified. Moreover, based on the phylogeny derived in this study, it would be beneficial to analyze the temperature-specific sex change patterns among different strains. Taken together, the reproduction characteristics of O. denselamellosa indicated asynchronous gamete development patterns and the highest proportion of hermaphrodites. The spawning season was estimated to be from late spring to summer. However, the patterns of sex changes associated with the reproductive patterns were not determined. Thus, further studies in relation to the sex ratio and immature groups, as well as the mature and spawning groups associated with the lifespan of oysters, are required for elucidating the reproductive strategy.
In summary, this study determined the complete mt genome of the flat oyster O. denselamellosa collected from South Korea and performed phylogenetic analyses within Pteriomorphia. In addition, we confirmed the monthly changes in the gametogenesis, reproductive cycle, and sex ratio of O. denselamellosa from January to October 2021 in females. Overall, these findings will provide important information for further studies to help with the management and use of oyster resources.

Author Contributions

Data curation, Formal analysis, Writing—original draft, J.H.; Investigation, H.-J.K.; Conceptualization, S.-Y.O.; Conceptualization, Formal analysis, Writing—original draft, Y.-U.C. All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported by the Korea Institute of Energy Technology Evaluation and Planning (KETEP) Ministry of Trade, Industry & Energy (MOTIE) of the Republic of Korea (No. 20203040020130).

Institutional Review Board Statement

All experiments were conducted in compliance with the guidelines of the Institutional Animal Care and Experimental Committee of the Korea Institute of Ocean Science and Technology (KIOST)”, which approved the experimental protocol (No. 2021-03).

Informed Consent Statement

Not applicable.

Data Availability Statement

All data generated or analyzed during this study are available via the data repository of the KIOST. Requests for material should be made to the corresponding author.

Acknowledgments

The authors would like to thank to support of the Korea Institute of Energy Technology Evaluation and Planning (KETEP) and the Ministry of Trade, Industry & Energy (MOTIE) of the Republic of Korea (No. 20203040020130). Finally, we thank the editor and the anonymous reviewers whose comments greatly improved the manuscript.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Map showing Tongyoung marine living resources station, Tongyeong, Gyeongsangnam-do, South Korea.
Figure 1. Map showing Tongyoung marine living resources station, Tongyeong, Gyeongsangnam-do, South Korea.
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Figure 2. Monthly changes in the surface water temperature and salinity at the sampling site from January 2021 to October 2021. psu, practical salinity unit.
Figure 2. Monthly changes in the surface water temperature and salinity at the sampling site from January 2021 to October 2021. psu, practical salinity unit.
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Figure 3. (A) The mitochondrial genome map of Ostrea denselamellosa and (B) Maximum-likelihood phylogeny of 21 published complete mitochondrial genomes based on 12 concatenated nucleotide sequences of protein-coding genes. The red triangle indicates the O. denselamellosa strain analyzed in this study.
Figure 3. (A) The mitochondrial genome map of Ostrea denselamellosa and (B) Maximum-likelihood phylogeny of 21 published complete mitochondrial genomes based on 12 concatenated nucleotide sequences of protein-coding genes. The red triangle indicates the O. denselamellosa strain analyzed in this study.
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Figure 4. Photomicrographs of histological sections of Ostrea denselamellosa during gametogenesis. (A) Resting stage. (B) Early gametogenesis stage. (C) Advanced gametogenesis stage. (DF) Mature gonad stage of males, females, and hermaphrodites. (G) Spawned gonad stage. EVO, early vitellogenic oocyte; LM, lumen; MO mature oocyte; OG, oogonium; RO, relict oocyte; RS, relict spermatozoa; SZ spermatozoa; VO vitellogenic oocytes.
Figure 4. Photomicrographs of histological sections of Ostrea denselamellosa during gametogenesis. (A) Resting stage. (B) Early gametogenesis stage. (C) Advanced gametogenesis stage. (DF) Mature gonad stage of males, females, and hermaphrodites. (G) Spawned gonad stage. EVO, early vitellogenic oocyte; LM, lumen; MO mature oocyte; OG, oogonium; RO, relict oocyte; RS, relict spermatozoa; SZ spermatozoa; VO vitellogenic oocytes.
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Figure 5. Monthly variation in gonad developmental stages of Ostrea denselamellosa collected from Tongyeong, South Korea, from January 2021 to October 2021.
Figure 5. Monthly variation in gonad developmental stages of Ostrea denselamellosa collected from Tongyeong, South Korea, from January 2021 to October 2021.
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Figure 6. Distribution of sex categories of Ostrea denselamellosa collected from Tongyeong, South Korea, from January 2021 to October 2021.
Figure 6. Distribution of sex categories of Ostrea denselamellosa collected from Tongyeong, South Korea, from January 2021 to October 2021.
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Table 1. List of complete mt genomes used in this study.
Table 1. List of complete mt genomes used in this study.
Tax OnClassificationSize (bp)Accession No.
Mollusca
Bivalvia
Pteriomorphia
Mytilus edulisMytiloida; Mytiloidea; Mytilidae16,740AY484747
Mytilus galloprovincialisMytiloida; Mytiloidea; Mytilidae16,744AY497292
Mytilus trossulusMytiloida; Mytiloidea; Mytilidae18,652AY823625
Musculista senhousiaMytiloida; Mytiloidea; Mytilidae20,612GU001954
Crassostrea angulataOstreoida; Ostreoidea; Ostreidae18,225EU672832
Crassostrea ariakensisOstreoida; Ostreoidea; Ostreidae18,414EU672835
Crassostrea gigasOstreoida; Ostreoidea; Ostreidae18,225EU672831
Crassostrea hongkongensisOstreoida; Ostreoidea; Ostreidae18,622EU672834
Crassostrea iredaleiOstreoida; Ostreoidea; Ostreidae22,446FJ841967
Crassostrea sikameaOstreoida; Ostreoidea; Ostreidae18,243EU672833
Saccostrea mordaxOstreoida; Ostreoidea; Ostreidae16,532FJ841968
Saccostrea glomerataOstreoida; Ostreoidea; Ostreidae16,281KU310918
Ostrea denselamellosaOstreoida; Ostreoidea; Ostreidae16,277HM015199
Ostrea edulisOstreoida; Ostreoidea; Ostreidae16,320JF274008
Ostrea luridaOstreoida; Ostreoidea; Ostreidae16,344KC768038
Argopecten irradiansPectinoida; Pectinoidae; Pectinidae16,221EU023915
Chlamys farreriPectinoida; Pectinoidae; Pectinidae21,695EU715252
Mizuhopecten yessoensisPectinoida; Pectinoidae; Pectinidae20,414AB271769
Placopecten magellanicusPectinoida; Pectinoidae; Pectinidae32,115DQ088274
Mimachlamys nobilisPectinoida; Pectinoidae; Pectinidae17,963FJ415225
Gastropoda
Vetigastropoda
Haliotis rubraHaliotoidea; Haliotidae16,907NC_005940
Table 2. Summary of Ostrea denselamellosa mitogenome.
Table 2. Summary of Ostrea denselamellosa mitogenome.
GeneLocationSize (bp)Start CodonStop CodonIntergenic Region *
ATP61–550550GTGCGT0
trnY551–61363--2
trnC616–67862--36
ND2716–1714999ATGTAA37
trnP2336–239964--621
trnL2401–246767--1
trnS12468–253770--0
trnM12538–260063--0
ATP82625–2726102ATATAA24
trnS22745–281470 18
trnM22821–288363 6
COX22889–3585696ATGTAG1
CYTB3587–47471161ATATAA1
trnE4745–481267--8
trnT4821–488565--8
trnI4894–496067--18
COX34941–5840900ATGTAA130
trnG5971–603767--8
COX16046–76411596ATGTAA688
trnD8330–839768--55
trnW8453–851563--60
ND4L8576–8857282GTGTAA1
ND18859–9791933ATGTAA78
trnA9870–993465--12
trnF9947–10,01367--2
trnL10,016–10,08166--2
trnK10,084–10,14865--−1
ND310,148–10,501354ATGTAG0
trnQ10,502–10,56766--−1
ND610,579–11,046468ATGTAA−1
ND511,046–12,7161671ATGTAA37
l-rRNA12,754–14,2211468--−660
s-rRNA13,561–14,488928--0
ND414,495–15,8441350ATGTAA24
trnH15,845–15,90763--24
trnV15,932–15,99968--24
trnR16,008–16,07467--4
trnN16,079–16,14769---
* Negative numbers indicate overlapping nucleotides between adjacent genes.
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Han, J.; Kim, H.-J.; Oh, S.-Y.; Choi, Y.-U. Reproductive Characteristics of the Flat Oyster Ostrea denselamellosa (Bivalvia, Ostreidae) Found on the Southern Coast of South Korea. J. Mar. Sci. Eng. 2022, 10, 1326. https://doi.org/10.3390/jmse10091326

AMA Style

Han J, Kim H-J, Oh S-Y, Choi Y-U. Reproductive Characteristics of the Flat Oyster Ostrea denselamellosa (Bivalvia, Ostreidae) Found on the Southern Coast of South Korea. Journal of Marine Science and Engineering. 2022; 10(9):1326. https://doi.org/10.3390/jmse10091326

Chicago/Turabian Style

Han, Jeonghoon, Han-Jun Kim, Sung-Yong Oh, and Young-Ung Choi. 2022. "Reproductive Characteristics of the Flat Oyster Ostrea denselamellosa (Bivalvia, Ostreidae) Found on the Southern Coast of South Korea" Journal of Marine Science and Engineering 10, no. 9: 1326. https://doi.org/10.3390/jmse10091326

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