Molecular Evaluation of RNA-Based Immune Checkpoint Profiling in Clear Cell Renal Cell Carcinoma
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Design and Patient Recruitment
2.2. Nucleic Acid Extraction and Quality Assessment
2.3. Library Preparation, RNA Sequencing and NGS Data Processing
2.4. Bioinformatic Analysis
2.5. Statistical Analysis
3. Results
3.1. Clinical Characteristics of the Institutional Cohort
3.2. Immune Checkpoint Burden and Tumor Immune Phenotype
3.3. Association with Immune Cytolytic Activity
3.4. Coordinated Checkpoint Programs in RCC
3.5. Immune Checkpoint Gene Expression and Prognostic Significance in TCGA RCCs
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Characteristic | n (%)/Median (IQR) |
|---|---|
| Patients | 16 |
| Age, years | 67.5 (58.2–72.5) |
| Male sex | 12 (75.0%) |
| Grade group | |
| 1 | 11 (68.8%) |
| 2 | 5 (31.2%) |
| Tumor stage | |
| I | 8 (61.5%) |
| III | 5 (38.5%) |
| Immune phenotype | |
| Hot | 12 (75.0%) |
| Cold | 4 (25.0%) |
| Lymph node metastasis | |
| yes | 2 (12.5%) |
| no | 14 (87.5%) |
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© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
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Giacobbi, E.; Palumbo, V.; Servadei, F.; Bonfiglio, R.; Moscato, G.M.F.; Carilli, M.; Vittori, M.; Iacovelli, V.; Bove, P.; Mauriello, A.; et al. Molecular Evaluation of RNA-Based Immune Checkpoint Profiling in Clear Cell Renal Cell Carcinoma. J. Clin. Med. 2026, 15, 4311. https://doi.org/10.3390/jcm15114311
Giacobbi E, Palumbo V, Servadei F, Bonfiglio R, Moscato GMF, Carilli M, Vittori M, Iacovelli V, Bove P, Mauriello A, et al. Molecular Evaluation of RNA-Based Immune Checkpoint Profiling in Clear Cell Renal Cell Carcinoma. Journal of Clinical Medicine. 2026; 15(11):4311. https://doi.org/10.3390/jcm15114311
Chicago/Turabian StyleGiacobbi, Erica, Valeria Palumbo, Francesca Servadei, Rita Bonfiglio, Giusella Maria Francesca Moscato, Marco Carilli, Matteo Vittori, Valerio Iacovelli, Pierluigi Bove, Alessandro Mauriello, and et al. 2026. "Molecular Evaluation of RNA-Based Immune Checkpoint Profiling in Clear Cell Renal Cell Carcinoma" Journal of Clinical Medicine 15, no. 11: 4311. https://doi.org/10.3390/jcm15114311
APA StyleGiacobbi, E., Palumbo, V., Servadei, F., Bonfiglio, R., Moscato, G. M. F., Carilli, M., Vittori, M., Iacovelli, V., Bove, P., Mauriello, A., & Scimeca, M. (2026). Molecular Evaluation of RNA-Based Immune Checkpoint Profiling in Clear Cell Renal Cell Carcinoma. Journal of Clinical Medicine, 15(11), 4311. https://doi.org/10.3390/jcm15114311

