Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease
Abstract
1. Introduction
2. Materials and Methods
2.1. Patient Selection
2.2. Sample Size Determination
2.3. Periodontal Examination
2.4. Sample Collection and DNA Extraction
2.5. Multiplex Quantitative RT-PCR (qPCR)
2.6. Bacterial Quantification
2.7. Statistical Analysis
3. Results
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Bacteria | Target Gene | Primer/ Probe | Sequence (5′-3′) | Ref. | Bacteria | Target Gene | Primer/ Probe | Sequence (5′-3′) | Ref. |
---|---|---|---|---|---|---|---|---|---|
Aggregatibacter actinomycetemcomitans | leukotoxin | Forward | CG**********GA | [15] | Eubacterium nodatum | hypothetical protein | Forward | TG**********GA | [16] |
Reverse | AT**********CA | Reverse | AA**********AT | ||||||
Probe | [FAM]GG**********CC[BHQ1] | Probe | [TR]TT**********GG[BHQ2] | ||||||
Porphyromonas gingivalis | hemagglutinin | Forward | AC**********GC | [17] | Eikenella corrodens | prolineiminopeptidase | Forward | GC**********TG | [16] |
Reverse | GC**********CT | Reverse | GC**********TT | ||||||
Probe | [HEX]CG**********GA[BHQ1] | Probe | [Cy5]AC**********AT[BHQ2] | ||||||
Tannerella forsythia | karilysin protease | Forward | TG**********CC | [18] | Streptococcus mitis | 16S ribosomal RNA | Forward | GT**********CG | [19] |
Reverse | TT**********CA | Reverse | TA**********AT | ||||||
Probe | [TR]CC**********GG[BHQ2] | Probe | [FAM]TA**********CC[BHQ1] | ||||||
Treponema denticola | OpdB | Forward | AG**********AG | [20] | Streptococcus mutans | PTS EII | Forward | CA**********CA | [21] |
Reverse | GC**********AT | Reverse | TG**********CC | ||||||
Probe | [Cy5]CG**********TC[BHQ2] | Probe | [HEX]TG**********GG[BHQ1] | ||||||
Fusobacterium nucleatum | 16S ribosomal RNA | Forward | GG**********TC | [22] | Streptococcus sobrinus | Ftsk | Forward | GG**********CC | [23] |
Reverse | CT**********GC | Reverse | AC**********GG | ||||||
Probe | [FAM]AA**********CG[BHQ1] | Probe | [TR]AG**********GC[BHQ2] | ||||||
Prevotella intermedia | hemagglutinin | Forward | CA**********AC | [15] | Lactobacillus casei | att | Forward | CA**********GT | [24] |
Reverse | CA**********TC | Reverse | AC**********CC | ||||||
Probe | [HEX]CC**********AC[BHQ1] | Probe | [Cy5]TG**********GT[BHQ2] | ||||||
Prevotella nigrescens | gyrase subunit B | Forward | AG**********CT | [16] | Staphylococcus aureus | clumping factor A | Forward | GC**********AA | [25] |
Reverse | GC**********CT | Reverse | GA**********TT | ||||||
Probe | [TR]GC**********AA[BHQ2] | Probe | [FAM]TG**********CA[BHQ1] | ||||||
Parvimonas micra | 16S ribosomal RNA | Forward | GA**********AG | [15] | Enterococcus faecalis | gelE-sprE operon | Forward | GA**********TT | [26] |
Reverse | GG**********CC | Reverse | CG**********AC | ||||||
Probe | [FAM]GG**********CA[BHQ1] | Probe | [HEX]GC**********GA[BHQ1] | ||||||
Campylobacter rectus | GroEL | Forward | AA**********GG | [16] | Actinomyces viscosus | nanH | Forward | GC**********CG | [21] |
Reverse | TC**********GA | Reverse | GA**********CA | ||||||
Probe | [HEX]GG**********GT[BHQ1] | Probe | [TR]GA**********AA[BHQ2] |
Characteristic | Healthy Group (n = 35) | Severe Periodontitis Group (n = 52) | |
---|---|---|---|
Age (Years, mean ± SD) | 39.0 ± 17.9 | 56.2 ± 15.2 | |
Sex | Male | 29 (83%) | 44 (85%) |
Female | 6 (17%) | 8 (15%) | |
Smoking | Non-smokers | 31 (89%) | 46 (88%) |
Current smokers | 4 (11%) | 6 (12%) |
Bacteria | Healthy Group (n = 35) | Severe Periodontitis Group (n = 52) |
---|---|---|
Aggregatibacter actinomycetemcomitans | ||
Prevalence, n (%) a | 1 (2.9) | 7 (13.5) |
Median bacterial cells proportion (%) (IQR) | 0.46 (0.46–0.46) | 0.75 (0.46–1.07) |
Porphyromonas gingivalis | ||
Prevalence, n (%) | 16 (45.7) | 47 (90.4) |
Median bacterial cells proportion (%) (IQR) | 3.43 (1.74–5.86) | 3.83 (2.27–8.28) |
Tannerella forsythia | ||
Prevalence, n (%) | 26 (74.3) | 38 (73.1) |
Median bacterial cells proportion (%) (IQR) | 3.07 (0.65–7.74) | 26.07 (4.49–50.82) |
Treponema denticola | ||
Prevalence, n (%) a | 15 (42.9) | 36 (69.2) |
Median bacterial cells proportion (%) (IQR) | 0.59 (0.18–2.34) | 2.91 (1.36–5.39) |
Fusobacterium nucleatum | ||
Prevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells proportion (%) (IQR) | 18.73 (13.31–23.15) | 12.89 (7.23–20.02) |
Prevotella intermedia | ||
Prevalence, n (%) | 8 (22.9) | 15 (28.8) |
Median bacterial cells proportion (%) (IQR) | 0.22 (0.05–0.46) | 0.11 (0.05–0.19) |
Prevotella nigrescens | ||
Prevalence, n (%) a | 28 (80.0) | 43 (82.7) |
Median bacterial cells proportion (%) (IQR) | 0.73 (0.4–1.94) | 0.47 (0.14–1.23) |
Parvimonas micra | ||
Prevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells proportion (%) (IQR) | 0.5 (0.29–0.82) | 0.99 (0.45–1.81) |
Campylobacter rectus | ||
Prevalence, n (%) | 28 (80.0) | 45 (86.5) |
Median bacterial cells proportion (%) (IQR) | 0.11 (0.06–0.18) | 0.08 (0.04–0.13) |
Eubacterium nodatum | ||
Prevalence, n (%) | 3 (8.6) | 14 (26.9) |
Median bacterial cells proportion (%) (IQR) | 0.21 (0.12–0.27) | 0.71 (0.3–1.34) |
Eikenella corrodens | ||
Prevalence, n (%) | 4 (11.4) | 15 (28.8) |
Median bacterial cells proportion (%) (IQR) | 0.07 (0.04–0.45) | 0.28 (0.15–0.71) |
Streptococcus mitis | ||
Prevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells proportion (%) (IQR) | 73.72 (63.61–79.49) | 59.13 (37.87–70.34) |
Streptococcus mutans | ||
Prevalence, n (%) | 23 (65.7) | 35 (67.3) |
Median bacterial cells proportion (%) (IQR) | 0.03 (0.02–0.1) | 0.03 (0.01–0.15) |
Streptococcus sobrinus | ||
Prevalence, n (%) | 1 (2.9) | 5 (9.6) |
Median bacterial cells proportion (%) (IQR) | 0.06 (0.06–0.06) | 0 (0–0.01) |
Lactobacillus casei | ||
Prevalence, n (%) | 6 (17.1) | 18 (34.6) |
Median bacterial cells proportion (%) (IQR) | 0.01 (0–0.04) | 0 (0–0.01) |
Staphylococcus aureus | ||
Prevalence, n (%) | 15 (42.9) | 4 (7.7) |
Median bacterial cells proportion (%) (IQR) | 0.02 (0.01–0.14) | 0.03 (0–0.07) |
Enterococcus faecalis | ||
Prevalence, n (%) | 0 (0.0) | 0 (0.0) |
Median bacterial cells proportion (%) (IQR) | NA (NA–NA) | NA (NA–NA) |
Actinomyces viscosus | ||
Prevalence, n (%) | 0 (0.0) | 0 (0.0) |
Median bacterial cells proportion (%) (IQR) | NA (NA–NA) | NA (NA–NA) |
Total number of cellsPrevalence, n (%) | 35 (100.0) | 52 (100.0) |
Median bacterial cells (IQR) | 36,126,518 (16,199,034–92,716,204) | 108524910 (69,243,624.5–177,393,988.25) |
Aa | Pg | Tf | Td | Fn | Pi | Pn | Pm | Cr | En | Ec | Sm | Smu | Ss | Lc | Sa | Total | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aa | 0.96 * | −0.49 | 0.3 | 0.38 | 0.98 * | 0.91 * | 0.57 | 0.07 | −0.26 | ||||||||
Pg | −0.04 | 0.25 | −0.01 | −0.06 | 0.16 | 0.23 | −0.02 | 0.57 * | −0.3 | −0.34 * | 0.16 | 0.5 | −0.05 | −0.27 | −0.06 | ||
Tf | 0.19 | −0.56 * | −0.21 | −0.28 * | 0.03 | −0.02 | 0.1 | −0.37 | −0.87 * | −0.22 | −0.54 | −0.2 | −0.21 | 0.14 | |||
Td | −0.17 | 0.53 * | 0.05 | 0.61 * | −0.08 | 0.8 * | −0.24 | −0.42 * | −0.02 | −0.17 | 0.34 | −0.4 | −0.07 | ||||
Fn | 0.21 | 0.25 * | −0.15 | 0.18 | −0.17 | 0.07 | 0.25 * | 0.02 | 0.9 * | 0.52 * | 0.02 | −0.13 | |||||
Pi | 0.53 * | 0.14 | 0.51 * | 0.51 | 0.09 | −0.09 | 0.43 | 0.32 | |||||||||
Pn | 0.15 | 0.23 | −0.16 | −0.13 | 0.07 | −0.18 | 0.75 | −0.03 | −0.32 | −0.21 | |||||||
Pm | 0.18 | 0.13 | −0.27 | −0.23 * | 0 | 0.17 | −0.02 | −0.23 | −0.02 | ||||||||
Cr | −0.31 | −0.24 | 0.03 | −0.15 | 0.88 * | 0.06 | −0.24 | −0.16 | |||||||||
En | −0.13 | 0.35 | 0.3 | 0.42 | |||||||||||||
Ec | 0.24 | 0.19 | −0.17 | −0.16 | |||||||||||||
Sm | 0.12 | 0.33 | 0.04 | 0.23 | −0.03 | ||||||||||||
Smu | −0.12 | −0.13 | −0.15 | −0.09 | |||||||||||||
Ss | −0.62 | ||||||||||||||||
Lc | −0.16 | ||||||||||||||||
Sa | −0.21 | ||||||||||||||||
Total |
Aa | Pg | Tf | Td | Fn | Pi | Pn | Pm | Cr | En | Ec | Sm | Smu | Ss | Lc | Sa | Total | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aa | 0.96 * | −0.81 | 0.24 | 0.55 | 0.98 * | 0.92 * | 0.56 | 0.18 | −0.34 | ||||||||
Pg | −0.03 | 0.22 | 0.02 | −0.04 | 0.12 | 0.22 | 0 | 0.57 * | −0.32 | −0.3 * | 0.14 | 0.71 | −0.05 | −0.07 | |||
Tf | 0.11 | −0.67 * | −0.13 | −0.34 | −0.12 | −0.13 | 0.05 | −0.49 | −0.88 * | −0.29 | 0.11 | −0.31 | 0.05 | ||||
Td | −0.12 | 0.55 | 0.07 | 0.62 * | −0.09 | 0.78 * | −0.34 | −0.33 * | −0.08 | −0.17 | 0.4 | −0.16 | |||||
Fn | 0.26 | 0.33 * | −0.1 | 0.24 | −0.12 | 0.28 | 0.43 * | 0.38 * | 0.33 | 0.19 | 0.01 | ||||||
Pi | 0.75 * | 0.21 | 0.56 * | 0.58 | 0.15 | −0.16 | 0.36 | ||||||||||
Pn | 0.23 | 0.4 * | −0.22 | −0.14 | 0.15 | −0.15 | −0.26 | −0.17 | −0.23 | ||||||||
Pm | 0.22 | −0.09 | −0.32 | −0.11 | −0.08 | −0.37 | 0.11 | −0.12 | |||||||||
Cr | −0.32 | −0.22 | 0.12 | −0.18 | 0.95 * | 0.22 | −0.14 | ||||||||||
En | −0.13 | 0.31 | 0.3 | 0.45 | |||||||||||||
Ec | 0.2 | 0.18 | −0.23 | −0.24 | |||||||||||||
Sm | 0.12 | −0.2 | 0.24 | 0.04 | |||||||||||||
Smu | 0.01 | −0.23 | |||||||||||||||
Ss | −0.49 | ||||||||||||||||
Lc | −0.12 | ||||||||||||||||
Sa | |||||||||||||||||
Total |
Aa | Pg | Tf | Td | Fn | Pi | Pn | Pm | Cr | En | Ec | Sm | Smu | Ss | Lc | Sa | Total | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aa | 0.96 * | −0.81 | 0.24 | 0.55 | 0.98 * | 0.92 * | 0.56 | 0.18 | −0.34 | ||||||||
Pg | −0.03 | 0.22 | 0.02 | −0.04 | 0.12 | 0.22 | 0 | 0.57 * | −0.32 | −0.3 * | 0.14 | 0.71 | −0.05 | −0.07 | |||
Tf | 0.11 | −0.67 * | −0.13 | −0.34 | −0.12 | −0.13 | 0.05 | −0.49 | −0.88 * | −0.29 | 0.11 | −0.31 | 0.05 | ||||
Td | −0.12 | 0.55 | 0.07 | 0.62 * | −0.09 | 0.78 * | −0.34 | −0.33 * | −0.08 | −0.17 | 0.4 | −0.16 | |||||
Fn | 0.26 | 0.33 * | −0.1 | 0.24 | −0.12 | 0.28 | 0.43 * | 0.38 * | 0.33 | 0.19 | 0.01 | ||||||
Pi | 0.75 * | 0.21 | 0.56 * | 0.58 | 0.15 | −0.16 | 0.36 | ||||||||||
Pn | 0.23 | 0.4 * | −0.22 | −0.14 | 0.15 | −0.15 | −0.26 | −0.17 | −0.23 | ||||||||
Pm | 0.22 | −0.09 | −0.32 | −0.11 | −0.08 | −0.37 | 0.11 | −0.12 | |||||||||
Cr | −0.32 | −0.22 | 0.12 | −0.18 | 0.95 * | 0.22 | −0.14 | ||||||||||
En | −0.13 | 0.31 | 0.3 | 0.45 | |||||||||||||
Ec | 0.2 | 0.18 | −0.23 | −0.24 | |||||||||||||
Sm | 0.12 | −0.2 | 0.24 | 0.04 | |||||||||||||
Smu | 0.01 | −0.23 | |||||||||||||||
Ss | −0.49 | ||||||||||||||||
Lc | −0.12 | ||||||||||||||||
Sa | |||||||||||||||||
Total |
Levels | No. of Subjects | No. (%) with Severe Periodontitis | Crude OR (95% CI) | p Value | Adjusted OR (95% CI) | p Value | |
---|---|---|---|---|---|---|---|
Aa | |||||||
0 | 79 | 45 (57.0) | 1 | 1 | |||
1 | 4 | 3 (75.0) | 1.8 (0.3–18.9) | 0.557 | 13.7 (0.9–389.2) | 0.059 | |
2 | 4 | 4 (100.0) | 6.8 (0.7–915.8) | 0.111 | 1.6 (0.1–232.1) | 0.750 | |
Pg | |||||||
0 | 24 | 5 (20.8) | 1 | - | 1 | - | |
1 | 31 | 23 (74.2) | 10.9 (3.1–39.0) | <0.001 | 3.3 (0.4–26.6) | 0.271 | |
2 | 32 | 24 (75.0) | 11.4 (3.2–40.6) | <0.001 | 1.1 (0.1–8.7) | 0.942 | |
Tf | |||||||
0 | 23 | 14 (60.9) | 1 | - | 1 | - | |
1 | 32 | 13 (40.6) | 0.4 (0.1–1.3) | 0.141 | 0.1 (0.0–1.1) | 0.059 | |
2 | 32 | 25 (78.1) | 2.3 (0.7–7.5) | 0.169 | 3.7 (0.3–48.1) | 0.319 | |
Td | |||||||
0 | 36 | 16 (44.4) | 1 | - | 1 | - | |
1 | 25 | 14 (56.0) | 1.6 (0.6–4.4) | 0.375 | 5.3 (0.6–44.8) | 0.129 | |
2 | 26 | 22 (84.6) | 6.9 (2.0–24.0) | 0.002 | 7.3 (1.1–47.4) | 0.035 | |
Fn | |||||||
1 | 43 | 30 (69.8) | 1 | - | 1 | - | |
2 | 44 | 22 (50.0) | 0.4 (0.2–1.0) | 0.062 | 1.0 (0.2–4.3) | 0.969 | |
Pi | |||||||
0 | 64 | 37 (57.8) | 1 | - | 1 | - | |
1 | 11 | 7 (63.6) | 1.3 (0.3–4.8) | 0.717 | 0.7 (0.1–7.6) | 0.762 | |
2 | 12 | 8 (66.7) | 1.5 (0.4–5.3) | 0.568 | 0.5 (0.1–3.4) | 0.504 | |
Pn | |||||||
0 | 16 | 9 (56.2) | 1 | - | 1 | - | |
1 | 35 | 25 (71.4) | 1.9 (0.6–6.7) | 0.289 | 120.4 (5.3–2725.4) | 0.002 | |
2 | 36 | 18 (50.0) | 0.8 (0.2–2.5) | 0.677 | 22.5 (2.0–260.6) | 0.012 | |
Pm | |||||||
1 | 43 | 19 (44.2) | 1 | - | 1 | - | |
2 | 44 | 33 (75.0) | 3.8 (1.5–9.4) | 0.004 | 4.4 (1.0–20.1) | 0.057 | |
Cr | |||||||
0 | 14 | 7 (50.0) | 1 | - | 1 | - | |
1 | 36 | 25 (69.4) | 2.3 (0.6–8.1) | 0.203 | 3.5 (0.5–27.3) | 0.226 | |
2 | 37 | 20 (54.1) | 1.2 (0.3–4.0) | 0.795 | 1.6 (0.2–11.0) | 0.628 | |
En | |||||||
0 | 70 | 38 (54.3) | 1 | - | 1 | - | |
1 | 8 | 5 (62.5) | 1.3 (0.3–6.1) | 0.694 | 0.3 (0.1–2.0) | 0.227 | |
2 | 9 | 9 (100.0) | 16.0 (1.9–2097.0) | 0.006 | 4.3 (0.4–609.5) | 0.280 | |
Ec | |||||||
0 | 68 | 37 (54.4) | 1 | - | 1 | - | |
1 | 9 | 6 (66.7) | 1.7 (0.4–7.3) | 0.490 | 2.6 (0.2–30.9) | 0.441 | |
2 | 10 | 9 (90.0) | 7.5 (0.9–62.8) | 0.061 | 13.6 (0.5–380.9) | 0.124 | |
Sm | |||||||
1 | 43 | 33 (76.7) | 1 | - | 1 | - | |
2 | 44 | 19 (43.2) | 0.2 (0.1–0.6) | 0.001 | 0.1 (0.0–0.8) | 0.024 | |
Smu | |||||||
0 | 29 | 17 (58.6) | 1 | - | 1 | - | |
1 | 29 | 18 (62.1) | 1.2 (0.4–3.3) | 0.788 | 2.5 (0.4–18.3) | 0.354 | |
2 | 29 | 17 (58.6) | 1.0 (0.4–2.8) | 1 | 0.4 (0.1–2.5) | 0.316 | |
Ss | |||||||
0 | 81 | 47 (58.0) | 1 | 1 | |||
1 | 3 | 3 (100.0) | 5.1 (0.5–692.1) | 0.205 | 1.6 (0.1–244.0) | 0.755 | |
2 | 3 | 2 (66.7) | 1.2 (0.2–13.7) | 0.856 | 1.4 (0.1–193.5) | 0.873 | |
Lc | |||||||
0 | 63 | 34 (54.0) | 1 | - | 1 | - | |
1 | 12 | 11 (91.7) | 9.4 (1.1–77.0) | 0.037 | 1.4 (0.1–14.1) | 0.795 | |
2 | 12 | 7 (58.3) | 1.2 (0.3– 4.2) | 0.780 | 0.3 (0.0–1.9) | 0.192 | |
Sa | |||||||
0 | 68 | 48 (70.6) | 1 | - | 1 | - | |
1 | 9 | 2 (22.2) | 0.1 (0.0–0.6) | 0.011 | 0.2 (0.0–2.0) | 0.162 | |
2 | 10 | 2 (20.0) | 0.1 (0.0–0.5) | 0.006 | 0.4 (0.0–7.4) | 0.525 | |
Total | |||||||
1 | 43 | 18 (41.9) | 1 | - | 1 | - | |
2 | 44 | 34 (77.3) | 4.7 (1.9–12.0) | 0.001 | 1.4 (0.3–5.8) | 0.673 |
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Kim, J.-H.; Oh, J.-W.; Lee, Y.; Yun, J.-H.; Choi, S.-H.; Lee, D.-W. Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease. J. Clin. Med. 2021, 10, 891. https://doi.org/10.3390/jcm10040891
Kim J-H, Oh J-W, Lee Y, Yun J-H, Choi S-H, Lee D-W. Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease. Journal of Clinical Medicine. 2021; 10(4):891. https://doi.org/10.3390/jcm10040891
Chicago/Turabian StyleKim, Jeong-Hwa, Jae-Woon Oh, Young Lee, Jeong-Ho Yun, Seong-Ho Choi, and Dong-Woon Lee. 2021. "Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease" Journal of Clinical Medicine 10, no. 4: 891. https://doi.org/10.3390/jcm10040891
APA StyleKim, J.-H., Oh, J.-W., Lee, Y., Yun, J.-H., Choi, S.-H., & Lee, D.-W. (2021). Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease. Journal of Clinical Medicine, 10(4), 891. https://doi.org/10.3390/jcm10040891