Structural and Functional Characterization of the Newly Designed Antimicrobial Peptide Crabrolin21
Abstract
:1. Introduction
2. Materials and Methods
2.1. Antimicrobial Susceptibility Tests
2.2. Liposome Preparation
2.3. CD Experiments
2.4. Membrane-Perturbing Activity Experiments
2.5. Hemolytic Activity Assay
2.6. NMR Spectroscopy
3. Results
3.1. Antimicrobial Assays
3.2. Membrane-Perturbing Activity
3.3. Secondary Structure of the Peptide: CD Experiments
3.4. Peptide–Membrane Association
3.5. Toxicity Assay
3.6. NMR Spectroscopy
4. Discussion
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
- Murray, C.J.; Ikuta, K.S.; Sharara, F.; Swetschinski, L.; Aguilar, G.R.; Gray, A.; Han, C.; Bisignano, C.; Rao, P.; Wool, E.; et al. Global burden of bacterial antimicrobial resistance in 2019: A systematic analysis. Lancet 2022, 399, 629–655. [Google Scholar] [CrossRef] [PubMed]
- Ibrahim, M.E.; Bilal, N.E.; Hamid, M. Increased multi-drug resistant Escherichia coli from hospitals in Khartoum state, Sudan. Afr. Health Sci. 2013, 12, 368–375. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Mulani, M.S.; Kamble, E.E.; Kumkar, S.N.; Tawre, M.S.; Pardesi, K.R. Emerging Strategies to Combat ESKAPE Pathogens in the Era of Antimicrobial Resistance: A Review. Front. Microbiol. 2019, 10, 539. [Google Scholar] [CrossRef] [PubMed]
- Steinstraesser, L.; Kraneburg, U.; Jacobsen, F.; Al-Benna, S. Host defense peptides and their antimicrobial-immunomodulatory duality. Immunobiology 2011, 216, 322–333. [Google Scholar] [CrossRef]
- Yeung, A.T.Y.; Gellatly, S.L.; Hancock, R.E.W. Multifunctional cationic host defence peptides and their clinical applications. Cell. Mol. Life Sci. 2011, 68, 2161–2176. [Google Scholar] [CrossRef] [PubMed]
- Hancock, R.E.W.; Haney, E.F.; Gill, E.E. The immunology of host defence peptides: Beyond antimicrobial activity. Nat. Rev. Immunol. 2016, 16, 321–334. [Google Scholar] [CrossRef]
- Nguyen, L.T.; Haney, E.F.; Vogel, H.J. The expanding scope of antimicrobial peptide structures and their modes of action. Trends Biotechnol. 2011, 29, 464–472. [Google Scholar] [CrossRef]
- Epand, R.M.; Vogel, H.J. Diversity of antimicrobial peptides and their mechanisms of action. Biochim. Biophys. Acta 1999, 1462, 11–28. [Google Scholar] [CrossRef] [Green Version]
- Nicolas, P. Multifunctional host defense peptides: Intracellular-targeting antimicrobial peptides. FEBS J. 2009, 276, 6483–6496. [Google Scholar] [CrossRef] [PubMed]
- McHenry, A.J.; Sciacca, M.F.; Brender, J.R.; Ramamoorthy, A. Does cholesterol suppress the antimicrobial peptide induced disruption of lipid raft containing membranes? Biochim. Biophys. Acta 2012, 1818, 3019–3024. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Yu, G.; Baeder, D.Y.; Regoes, R.R.; Rolff, J. Predicting drug resistance evolution: Insights from antimicrobial peptides and antibiotics. Proc. Biol. Sci. 2018, 285, 20172687. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Ramos-Martín, F.; Herrera-León, C.; Antonietti, V.; Sonnet, P.; Sarazin, C.; D’Amelio, N. Antimicrobial Peptide K11 Selectively Recognizes Bacterial Biomimetic Membranes and Acts by Twisting Their Bilayers. Pharmaceuticals 2020, 14, 1. [Google Scholar] [CrossRef]
- Argiolas, A.; Pisano, J.J. Isolation and characterization of two new peptides, mastoparan C and crabrolin, from the venom of the European hornet, Vespa crabro. J. Biol. Chem. 1984, 259, 10106–10111. [Google Scholar] [CrossRef] [PubMed]
- Aschi, M.; Perini, N.; Bouchemal, N.; Luzi, C.; Savarin, P.; Migliore, L.; Bozzi, A.; Sette, M. Structural characterization and biological activity of Crabrolin peptide isoforms with different positive charge. Biochim. Biophys. Acta Biomembr. 2019, 1862, 183055. [Google Scholar] [CrossRef] [PubMed]
- Aschi, M.; Bozzi, A.; Luzi, C.; Bouchemal, N.; Sette, M. Crabrolin, a natural antimicrobial peptide: Structural properties. J. Pept. Sci. 2017, 23, 693–700. [Google Scholar] [CrossRef]
- Cantini, F.; Luzi, C.; Bouchemal, N.; Savarin, P.; Bozzi, A.; Sette, M. Effect of positive charges in the structural interaction of crabrolin isoforms with lipopolysaccharide. J. Pept. Sci. 2020, 26, e3271. [Google Scholar] [CrossRef] [PubMed]
- Wiegand, I.; Hilpert, K.; Hancock, R.E.W. Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat. Protoc. 2008, 3, 163–175. [Google Scholar] [CrossRef]
- Orioni, B.; Bocchinfuso, G.; Kim, J.Y.; Palleschi, A.; Grande, G.; Bobone, S.; Park, Y.; Kim, J.I.; Hahm, K.-S.; Stella, L. Membrane perturbation by the antimicrobial peptide PMAP-23: A fluorescence and molecular dynamics study. Biochim. Biophys. Acta Biomembr. 2009, 1788, 1523–1533. [Google Scholar] [CrossRef]
- Stewart, J.C.M. Colorimetric determination of phospholipids with ammonium ferrothiocyanate. Anal. Biochem. 1980, 104, 10–14. [Google Scholar] [CrossRef]
- Bocchinfuso, G.; Bobone, S.; Mazzuca, C.; Palleschi, A.; Stella, L. Fluorescence spectroscopy and molecular dynamics simulations in studies on the mechanism of membrane destabilization by antimicrobial peptides. Cell. Mol. Life Sci. 2011, 68, 2281–2301. [Google Scholar] [CrossRef]
- Savini, F.; Luca, V.; Bocedi, A.; Massoud, R.; Park, Y.; Mangoni, M.L.; Stella, L. Cell-Density Dependence of Host-Defense Peptide Activity and Selectivity in the Presence of Host Cells. ACS Chem. Biol. 2016, 12, 52–56. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Charles, R.; Sanders, I.I.; Schwonek, J.P. Characterization of Magnetically Orientable Bilayers in Mixtures of Dihexanoylphosphatidylcholine and Dimyristoylphosphatidylcholine by Solid-State NMR. Available online: https://pubs.acs.org/doi/pdf/10.1021/bi00152a029 (accessed on 11 January 2023).
- Kupce, E.; Freeman, R. Polychromatic Selective Pulses. J. Magn. Reson. Ser. A 1993, 102, 122–126. [Google Scholar] [CrossRef]
- Delaglio, F.; Grzesiek, S.; Vuister, G.W.; Zhu, G.; Pfeifer, J.; Bax, A. NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 1995, 6, 277–293. [Google Scholar] [CrossRef] [PubMed]
- Maciejewski, M.W.; Schuyler, A.D.; Gryk, M.R.; Moraru, I.I.; Romero, P.R.; Ulrich, E.L.; Eghbalnia, H.R.; Livny, M.; Delaglio, F.; Hoch, J.C. NMRbox: A Resource for Biomolecular NMR Computation. Biophys. J. 2017, 112, 1529–1534. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Lee, W.; Tonelli, M.; Markley, J.L. NMRFAM-SPARKY: Enhanced software for biomolecular NMR spectroscopy. Bioinformatics 2015, 31, 1325–1327. [Google Scholar] [CrossRef] [Green Version]
- Keller, R. The Computer Aided Resonance Assignment Tutorial; Cantina Verlag; The Swiss Federal Institute of Technology: Zurich, Switzerland, 2004; ISBN 3-85600-112-3. [Google Scholar]
- Güntert, P.; Buchner, L. Combined automated NOE assignment and structure calculation with CYANA. J. Biomol. NMR 2015, 62, 453–471. [Google Scholar] [CrossRef]
- Pettersen, E.F.; Goddard, T.D.; Huang, C.C.; Couch, G.S.; Greenblatt, D.M.; Meng, E.C.; Ferrin, T.E. UCSF Chimera? A visualization system for exploratory research and analysis. J. Comput. Chem. 2004, 25, 1605–1612. [Google Scholar] [CrossRef] [Green Version]
- Stella, L.; Mazzuca, C.; Venanzi, M.; Palleschi, A.; Didonè, M.; Formaggio, F.; Toniolo, C.; Pispisa, B. Aggregation and Water-Membrane Partition as Major Determinants of the Activity of the Antibiotic Peptide Trichogin GA IV. Biophys. J. 2004, 86, 936–945. [Google Scholar] [CrossRef] [Green Version]
- Bobone, S.; Stella, L. Selectivity of Antimicrobial Peptides: A Complex Interplay of Multiple Equilibria. Adv. Exp. Med. Biol. 2019, 1117, 175–214. [Google Scholar]
- Strandberg, E.; Tiltak, D.; Ieronimo, M.; Kanithasen, N.; Wadhwani, P.; Ulrich, A.S. Influence of C-terminal amidation on the antimicrobial and hemolytic activities of cationic α-helical peptides. Pure Appl. Chem. 2007, 79, 717–728. [Google Scholar] [CrossRef]
- Wishart, D.S.; Sykes, B.D.; Richards, F.M. The chemical shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 1992, 31, 1647–1651. [Google Scholar] [CrossRef] [PubMed]
- Bhattacharya, A.; Tejero, R.; Montelione, G.T. Evaluating protein structures determined by structural genomics consortia. Proteins 2006, 66, 778–795. [Google Scholar] [CrossRef]
- Grigoryan, G.; Keating, A.E. Structural specificity in coiled-coil interactions. Curr. Opin. Struct. Biol. 2008, 18, 477–483. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Krishnakumari, V.; Nagaraj, R. Antimicrobial and hemolytic activities of crabrolin, a 13-residue peptide from the venom of the European hornet, Vespa crabro, and its analogs. J. Pept. Res. 2009, 50, 88–93. [Google Scholar] [CrossRef] [PubMed]
- Cohen, J. The immunopathogenesis of sepsis. Nature 2002, 420, 885–891. [Google Scholar] [CrossRef] [PubMed]
Crabrolin WT a | Crabrolin Minus a | Crabrolin Plus a | Crabrolin21 | Buffer b | |
---|---|---|---|---|---|
Minimal Inhibitory Concentration (µM) | |||||
Gram-negative bacteria | |||||
Escherichia coli ATCC 25922 | 200 | >383 | 24 | 4 | n.i. |
Pseudomonas aeruginosa ATCC 27853 | >400 | >383 | > 383 | 16 | n.i. |
Proteus mirabilis CCUG 26767 | >400 | >383 | >383 | >257 | n.i. |
Salmonella enterica Typhimurium LT2 | 200 | >383 | 48 | 8 | n.i. |
Klebsiella pneumoniae ATCC 13883 | >400 | >383 | 48 | 4 | n.i. |
Gram-positive bacteria | |||||
Bacillus subtilis ATCC 6633 | 200 | >383 | 48 | 4 | n.i. |
Staphylococcus aureus ATCC 29213 | 200 | >383 | 190 | 4 | n.i. |
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Cantini, F.; Giannì, P.; Bobone, S.; Troiano, C.; van Ingen, H.; Massoud, R.; Perini, N.; Migliore, L.; Savarin, P.; Sanders, C.; et al. Structural and Functional Characterization of the Newly Designed Antimicrobial Peptide Crabrolin21. Membranes 2023, 13, 365. https://doi.org/10.3390/membranes13030365
Cantini F, Giannì P, Bobone S, Troiano C, van Ingen H, Massoud R, Perini N, Migliore L, Savarin P, Sanders C, et al. Structural and Functional Characterization of the Newly Designed Antimicrobial Peptide Crabrolin21. Membranes. 2023; 13(3):365. https://doi.org/10.3390/membranes13030365
Chicago/Turabian StyleCantini, Francesca, Paola Giannì, Sara Bobone, Cassandra Troiano, Hugo van Ingen, Renato Massoud, Nicoletta Perini, Luciana Migliore, Philippe Savarin, Charles Sanders, and et al. 2023. "Structural and Functional Characterization of the Newly Designed Antimicrobial Peptide Crabrolin21" Membranes 13, no. 3: 365. https://doi.org/10.3390/membranes13030365
APA StyleCantini, F., Giannì, P., Bobone, S., Troiano, C., van Ingen, H., Massoud, R., Perini, N., Migliore, L., Savarin, P., Sanders, C., Stella, L., & Sette, M. (2023). Structural and Functional Characterization of the Newly Designed Antimicrobial Peptide Crabrolin21. Membranes, 13(3), 365. https://doi.org/10.3390/membranes13030365