Next-Generation Vaccine Design for Porcine Enteric Coronaviruses: Aligning Antigenic Breadth, Mucosal Immunity, and Translational Evaluation
Abstract
1. Introduction
2. Virological and Structural Basis of PEC Vaccine Design
3. Antigen Selection and Immunogen Design
4. Mucosal Immunity and Route of Immunization
5. Integrated Vaccine Platforms
6. Critical Gaps in Evaluation and Translation
7. Priorities for Next-Generation PEC Vaccine Development
8. Conclusions and Future Perspective
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
- Kong, F.; Jia, H.; Xiao, Q.; Fang, L.; Wang, Q. Prevention and Control of Swine Enteric Coronaviruses in China: A Review of Vaccine Development and Application. Vaccines 2023, 12, 11. [Google Scholar] [CrossRef] [PubMed]
- Liu, Q.; Wang, H.Y. Porcine enteric coronaviruses: An updated overview of the pathogenesis, prevalence, and diagnosis. Vet. Res. Commun. 2021, 45, 75–86. [Google Scholar] [CrossRef]
- Park, J.E. Porcine Epidemic Diarrhea: Insights and Progress on Vaccines. Vaccines 2024, 12, 212. [Google Scholar] [CrossRef]
- Turlewicz-Podbielska, H.; Pomorska-Mol, M. Porcine Coronaviruses: Overview of the State of the Art. Virol. Sin. 2021, 36, 833–851. [Google Scholar] [CrossRef]
- Ibrahim, Y.M.; Liu, C.; Yu, Y.; Yang, L.; Chen, Q.; Ma, W.; Werid, G.M.; Li, S.; Luo, J.; Gao, S.; et al. Swine Enteric Coronaviruses: An Updated Overview of Epidemiology, Diagnosis, Prevention, and Control. Animals 2026, 16, 458. [Google Scholar] [CrossRef]
- Kong, F.; Wang, Q.; Kenney, S.P.; Jung, K.; Vlasova, A.N.; Saif, L.J. Porcine Deltacoronaviruses: Origin, Evolution, Cross-Species Transmission and Zoonotic Potential. Pathogens 2022, 11, 79. [Google Scholar] [CrossRef]
- Schulz, L.L.; Tonsor, G.T. Assessment of the economic impacts of porcine epidemic diarrhea virus in the United States. J. Anim. Sci. 2015, 93, 5111–5118. [Google Scholar] [CrossRef]
- You, S.; Liu, T.; Zhang, M.; Zhao, X.; Dong, Y.; Wu, B.; Wang, Y.; Li, J.; Wei, X.; Shi, B. African swine fever outbreaks in China led to gross domestic product and economic losses. Nat. Food 2021, 2, 802–808. [Google Scholar] [CrossRef]
- Osemeke, O.; Silva, G.S.; Corzo, C.A.; Kikuti, M.; Vadnais, S.; Yue, X.; Linhares, D.; Holtkamp, D. Economic impact of productivity losses attributable to porcine reproductive and respiratory syndrome virus in United States pork production, 2016–2020. Prev. Vet. Med. 2025, 244, 106627. [Google Scholar] [CrossRef] [PubMed]
- Guan, H.; Wang, Y.; Perculija, V.; Saeed, A.; Liu, Y.; Li, J.; Jan, S.S.; Li, Y.; Zhu, P.; Ouyang, S. Cryo-electron Microscopy Structure of the Swine Acute Diarrhea Syndrome Coronavirus Spike Glycoprotein Provides Insights into Evolution of Unique Coronavirus Spike Proteins. J. Virol. 2020, 94, e01301-20. [Google Scholar] [CrossRef] [PubMed]
- Kirchdoerfer, R.N.; Bhandari, M.; Martini, O.; Sewall, L.M.; Bangaru, S.; Yoon, K.J.; Ward, A.B. Structure and immune recognition of the porcine epidemic diarrhea virus spike protein. Structure 2021, 29, 385–392.e5. [Google Scholar] [CrossRef] [PubMed]
- Shang, J.; Zheng, Y.; Yang, Y.; Liu, C.; Geng, Q.; Tai, W.; Du, L.; Zhou, Y.; Zhang, W.; Li, F. Cryo-Electron Microscopy Structure of Porcine Deltacoronavirus Spike Protein in the Prefusion State. J. Virol. 2018, 92, e01556-17. [Google Scholar] [CrossRef] [PubMed]
- Wrapp, D.; McLellan, J.S. The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation. J. Virol. 2019, 93, e00923-19. [Google Scholar] [CrossRef]
- Saif, L.J. Mucosal immunity: An overview and studies of enteric and respiratory coronavirus infections in a swine model of enteric disease. Vet. Immunol. Immunopathol. 1996, 54, 163–169. [Google Scholar] [CrossRef] [PubMed]
- Saif, L.J.; van Cott, J.L.; Brim, T.A. Immunity to transmissible gastroenteritis virus and porcine respiratory coronavirus infections in swine. Vet. Immunol. Immunopathol. 1994, 43, 89–97. [Google Scholar] [CrossRef]
- VanCott, J.L.; Brim, T.A.; Lunney, J.K.; Saif, L.J. Contribution of antibody-secreting cells induced in mucosal lymphoid tissues of pigs inoculated with respiratory or enteric strains of coronavirus to immunity against enteric coronavirus challenge. J. Immunol. 1994, 152, 3980–3990. [Google Scholar] [CrossRef]
- Wang, Q.; Vlasova, A.N.; Kenney, S.P.; Saif, L.J. Emerging and re-emerging coronaviruses in pigs. Curr. Opin. Virol. 2019, 34, 39–49. [Google Scholar] [CrossRef]
- Pan, Q.; Sun, Y.; Bai, H.; Wang, W.; Liu, B.; Li, M.; Gao, A.; Zheng, D.; Jiang, W.; Hu, H.; et al. Design of Mucosal Vaccines Against Swine Enteric Coronaviruses: From Antigen Delivery to Immune Activation. Transbound. Emerg. Dis. 2025, 2025, 3230453. [Google Scholar] [CrossRef]
- Veenstra, T.D. Basic Virology. Adv. Exp. Med. Biol. 2026, 1511, 29–49. [Google Scholar] [CrossRef]
- Luo, H.; Liang, Z.; Lin, J.; Wang, Y.; Liu, Y.; Mei, K.; Zhao, M.; Huang, S. Research progress of porcine epidemic diarrhea virus S protein. Front. Microbiol. 2024, 15, 1396894. [Google Scholar] [CrossRef]
- Guo, L.; Lin, S.; Chen, Z.; Cao, Y.; He, B.; Lu, G. Targetable elements in SARS-CoV-2 S2 subunit for the design of pan-coronavirus fusion inhibitors and vaccines. Signal Transduct. Target. Ther. 2023, 8, 197. [Google Scholar] [CrossRef]
- Hsieh, C.L.; Leist, S.R.; Miller, E.H.; Zhou, L.; Powers, J.M.; Tse, A.L.; Wang, A.; West, A.; Zweigart, M.R.; Schisler, J.C.; et al. Prefusion-stabilized SARS-CoV-2 S2-only antigen provides protection against SARS-CoV-2 challenge. Nat. Commun. 2024, 15, 1553. [Google Scholar] [CrossRef] [PubMed]
- Watanabe, Y.; Allen, J.D.; Wrapp, D.; McLellan, J.S.; Crispin, M. Site-specific glycan analysis of the SARS-CoV-2 spike. Science 2020, 369, 330–333. [Google Scholar] [CrossRef] [PubMed]
- Du, W.; Debski-Antoniak, O.; Drabek, D.; van Haperen, R.; van Dortmondt, M.; van der Lee, J.; Drulyte, I.; van Kuppeveld, F.J.M.; Grosveld, F.; Hurdiss, D.L.; et al. Neutralizing antibodies reveal cryptic vulnerabilities and interdomain crosstalk in the porcine deltacoronavirus spike protein. Nat. Commun. 2024, 15, 5330. [Google Scholar] [CrossRef]
- Li, J.; Zhao, S.; Zhang, B.; Huang, J.; Peng, Q.; Xiao, L.; Yuan, X.; Guo, R.; Zhou, J.; Fan, B.; et al. A novel recombinant S-based subunit vaccine induces protective immunity against porcine deltacoronavirus challenge in piglets. J. Virol. 2023, 97, e0095823. [Google Scholar] [CrossRef]
- Wang, Y.; Song, J.; Deng, X.; Wang, J.; Zhang, M.; Liu, Y.; Tang, P.; Liu, H.; Zhou, Y.; Tong, G.; et al. Nanoparticle vaccines based on the receptor binding domain of porcine deltacoronavirus elicit robust protective immune responses in mice. Front. Immunol. 2024, 15, 1328266. [Google Scholar] [CrossRef]
- Zhang, Y.; Chen, Y.; Zhou, J.; Wang, X.; Ma, L.; Li, J.; Yang, L.; Yuan, H.; Pang, D.; Ouyang, H. Porcine Epidemic Diarrhea Virus: An Updated Overview of Virus Epidemiology, Virulence Variation Patterns and Virus-Host Interactions. Viruses 2022, 14, 2434. [Google Scholar] [CrossRef]
- Zhang, E.; Wang, J.; Li, Y.; Huang, L.; Wang, Y.; Yang, Q. Comparison of oral and nasal immunization with inactivated porcine epidemic diarrhea virus on intestinal immunity in piglets. Exp. Ther. Med. 2020, 20, 1596–1606. [Google Scholar] [CrossRef] [PubMed]
- Langel, S.N.; Paim, F.C.; Alhamo, M.A.; Buckley, A.; Van Geelen, A.; Lager, K.M.; Vlasova, A.N.; Saif, L.J. Stage of Gestation at Porcine Epidemic Diarrhea Virus Infection of Pregnant Swine Impacts Maternal Immunity and Lactogenic Immune Protection of Neonatal Suckling Piglets. Front. Immunol. 2019, 10, 727. [Google Scholar] [CrossRef]
- Qiu, M.; Li, S.; Ye, M.; Li, J.; Sun, Z.; Li, X.; Xu, Y.; Xiao, Y.; Li, C.; Feng, B.; et al. Systemic Homologous Neutralizing Antibodies Are Inadequate for the Evaluation of Vaccine Protective Efficacy against Coinfection by High Virulent PEDV and PRRSV. Microbiol. Spectr. 2022, 10, e0257421. [Google Scholar] [CrossRef]
- Suda, Y.; Miyazaki, A.; Miyazawa, K.; Shibahara, T.; Ohashi, S. Systemic and intestinal porcine epidemic diarrhea virus-specific antibody response and distribution of antibody-secreting cells in experimentally infected conventional pigs. Vet. Res. 2021, 52, 2. [Google Scholar] [CrossRef]
- Kelsall, B.L.; Leon, F. Involvement of intestinal dendritic cells in oral tolerance, immunity to pathogens, and inflammatory bowel disease. Immunol. Rev. 2005, 206, 132–148. [Google Scholar] [CrossRef] [PubMed]
- Vela Ramirez, J.E.; Sharpe, L.A.; Peppas, N.A. Current state and challenges in developing oral vaccines. Adv. Drug Deliv. Rev. 2017, 114, 116–131. Corrigendum in Adv. Drug Deliv. Rev. 2019, 139, 158. https://doi.org/10.1016/j.addr.2018.08.008. Corrigendum in Adv. Drug Deliv. Rev. 2020, 161–162, 190–196. https://doi.org/10.1016/j.addr.2020.11.013. [CrossRef]
- Du, J.; Luo, J.; Yu, J.; Mao, X.; Luo, Y.; Zheng, P.; He, J.; Yu, B.; Chen, D. Manipulation of Intestinal Antiviral Innate Immunity and Immune Evasion Strategies of Porcine Epidemic Diarrhea Virus. BioMed Res. Int. 2019, 2019, 1862531. [Google Scholar] [CrossRef]
- Pan, Y.Y.; Wang, L.C.; Yang, F.; Yu, M. Interferon-lambda: New role in intestinal symptoms of COVID-19. World J. Gastroenterol. 2023, 29, 1942–1954. [Google Scholar] [CrossRef]
- Boyaka, P.N. Inducing Mucosal IgA: A Challenge for Vaccine Adjuvants and Delivery Systems. J. Immunol. 2017, 199, 9–16. [Google Scholar] [CrossRef] [PubMed]
- Cerutti, A. The regulation of IgA class switching. Nat. Rev. Immunol. 2008, 8, 421–434. [Google Scholar] [CrossRef]
- Johansen, F.E.; Kaetzel, C.S. Regulation of the polymeric immunoglobulin receptor and IgA transport: New advances in environmental factors that stimulate pIgR expression and its role in mucosal immunity. Mucosal. Immunol. 2011, 4, 598–602. [Google Scholar] [CrossRef]
- Wei, H.; Wang, J.Y. Role of Polymeric Immunoglobulin Receptor in IgA and IgM Transcytosis. Int. J. Mol. Sci. 2021, 22, 2284. [Google Scholar] [CrossRef] [PubMed]
- Su, K.; Wang, Y.; Yuan, C.; Zhang, Y.; Li, Y.; Li, T.; Song, Q. Intranasally inoculated bacterium-like particles displaying porcine epidemic diarrhea virus S1 protein induced intestinal mucosal immune response in mice. Front. Immunol. 2023, 14, 1269409. [Google Scholar] [CrossRef]
- Clancy AM, R. The Common Mucosal System Fifty Years on: From Cell Traffic in the Rabbit to Immune Resilience to SARS-CoV-2 Infection by Shifting Risk within Normal and Disease Populations. Vaccines 2023, 11, 1251. [Google Scholar] [CrossRef] [PubMed]
- Mora, J.R.; Iwata, M.; Eksteen, B.; Song, S.Y.; Junt, T.; Senman, B.; Otipoby, K.L.; Yokota, A.; Takeuchi, H.; Ricciardi-Castagnoli, P.; et al. Generation of gut-homing IgA-secreting B cells by intestinal dendritic cells. Science 2006, 314, 1157–1160. [Google Scholar] [CrossRef] [PubMed]
- Habtezion, A.; Nguyen, L.P.; Hadeiba, H.; Butcher, E.C. Leukocyte Trafficking to the Small Intestine and Colon. Gastroenterology 2016, 150, 340–354. [Google Scholar] [CrossRef]
- Huang, Y.; Xu, Z.; Gu, S.; Nie, M.; Wang, Y.; Zhao, J.; Li, F.; Deng, H.; Huang, J.; Sun, X.; et al. The recombinant pseudorabies virus expressing porcine deltacoronavirus spike protein is safe and effective for mice. BMC Vet. Res. 2022, 18, 16. [Google Scholar] [CrossRef]
- Zhang, Y.; Duan, Y.; Zhu, X.; Shi, L.; Zhang, J.; Mao, W.; Li, L.; Yuan, C.; Sun, M.; Zheng, H.; et al. An adenovirus-vectored recombinant vaccine confers passive immunity protection from swine acute diarrhea syndrome coronavirus challenge in neonatal mice. Virol. Sin. 2025, 40, 1037–1044. [Google Scholar] [CrossRef]
- Niu, X.; Wang, Q. Prevention and Control of Porcine Epidemic Diarrhea: The Development of Recombination-Resistant Live Attenuated Vaccines. Viruses 2022, 14, 1317. [Google Scholar] [CrossRef]
- Poonsuk, K.; Zimmerman, J. Historical and contemporary aspects of maternal immunity in swine. Anim. Health Res. Rev. 2018, 19, 31–45. [Google Scholar] [CrossRef]
- Li, L.; Yin, S.; Zhou, J.; Zhang, L.; Teng, Z.; Qiao, L.; Wang, Y.; Yu, J.; Zang, H.; Ding, Y.; et al. Spike 1 trimer, a nanoparticle vaccine against porcine epidemic diarrhea virus induces protective immunity challenge in piglets. Front. Microbiol. 2024, 15, 1386136. [Google Scholar] [CrossRef]
- Su, K.; Ren, J.; Zhang, Y.; Yuan, C.; Wang, Y.; Yang, L.; Fu, L.; Fan, T.; Song, Q. Intestinal mucosal immune responses induced by oral administration of chitosan nanoparticles encapsulating the PEDV S1 protein. Vet. Res. 2025, 57, 14. [Google Scholar] [CrossRef]
- Yang, M.; Xie, D.; Ji, W.; Zhu, S.J.; Zhou, Y. Oral Delivery of Lactococcus lactis Expressing Full-Length S Protein via Alginate-Chitosan Capsules Induces Immune Protection Against PEDV Infection in Mice. Vaccines 2025, 13, 421. [Google Scholar] [CrossRef] [PubMed]
- Li, J.; Xiao, L.; Chen, Z.; Fan, L.; Wang, W.; Guo, R.; He, Z.; Hu, H.; Jiang, J.; Zhao, L.; et al. A spike-based mRNA vaccine that induces durable and broad protection against porcine deltacoronavirus in piglets. J. Virol. 2024, 98, e0053524. [Google Scholar] [CrossRef]
- Yu, R.; Bai, Y.; Zhang, L.; Zhou, P.; Zhang, Z.; Yang, J.; Lu, Y.; Wang, D.; Peng, Y.; Li, D.; et al. Single self-cleaving mRNA vaccine expressing multiple viral structural proteins elicits robust immune responses and protects nursing piglets against PDCoV infection. J. Virol. 2025, 99, e0084925. [Google Scholar] [CrossRef] [PubMed]
- Zhang, B.; Li, S.; Zhou, J.; Wang, W.; Xiao, L.; Yuan, X.; Yi, X.; Fan, L.; Fan, B.; Zhu, X.; et al. A novel virus-like particles vaccine induces broad immune protective against deltacoronavirus in piglets. Virology 2024, 597, 110150. [Google Scholar] [CrossRef] [PubMed]
- Wang, S.; Liang, B.; Wang, W.; Li, L.; Feng, N.; Zhao, Y.; Wang, T.; Yan, F.; Yang, S.; Xia, X. Viral vectored vaccines: Design, development, preventive and therapeutic applications in human diseases. Signal Transduct. Target. Ther. 2023, 8, 149. [Google Scholar] [CrossRef]
- Bill, R.M. Recombinant protein subunit vaccine synthesis in microbes: A role for yeast? J. Pharm. Pharmacol. 2015, 67, 319–328. [Google Scholar] [CrossRef]
- Cid, R.; Bolivar, J. Platforms for Production of Protein-Based Vaccines: From Classical to Next-Generation Strategies. Biomolecules 2021, 11, 1072. [Google Scholar] [CrossRef]
- Langel, S.N.; Paim, F.C.; Lager, K.M.; Vlasova, A.N.; Saif, L.J. Lactogenic immunity and vaccines for porcine epidemic diarrhea virus (PEDV): Historical and current concepts. Virus Res. 2016, 226, 93–107. [Google Scholar] [CrossRef] [PubMed]
- Song, X.; Li, Y.; Wang, C.; Zhao, Y.; Yang, S.; Guo, R.; Hu, M.; Sun, M.; Zhang, G.; Li, Y.; et al. Efficacy evaluation of a bivalent subunit vaccine against epidemic PEDV heterologous strains with low cross-protection. J. Virol. 2024, 98, e0130924. [Google Scholar] [CrossRef]
- Won, H.; Lim, J.; Noh, Y.H.; Yoon, I.; Yoo, H.S. Efficacy of Porcine Epidemic Diarrhea Vaccines: A Systematic Review and Meta-Analysis. Vaccines 2020, 8, 642. [Google Scholar] [CrossRef]
- Hou, X.; Jiang, X.; Jiang, Y.; Tang, L.; Xu, Y.; Qiao, X.; Min, L.; Wen, C.; Ma, G.; Li, Y. Oral Immunization against PEDV with Recombinant Lactobacillus casei Expressing Dendritic Cell-Targeting Peptide Fusing COE Protein of PEDV in Piglets. Viruses 2018, 10, 106. [Google Scholar] [CrossRef]
- Sohn, E.J.; Kang, H.; Min, K.; Park, M.; Kim, J.H.; Seo, H.W.; Lee, S.J.; Kim, H.; Tark, D.; Cho, H.S.; et al. A Plant-Derived Maternal Vaccine against Porcine Epidemic Diarrhea Protects Piglets through Maternally Derived Immunity. Vaccines 2023, 11, 965. [Google Scholar] [CrossRef] [PubMed]
- Zhao, Y.; Fan, B.; Song, X.; Gao, J.; Guo, R.; Yi, C.; He, Z.; Hu, H.; Jiang, J.; Zhao, L.; et al. PEDV-spike-protein-expressing mRNA vaccine protects piglets against PEDV challenge. mBio 2024, 15, e02958-23. [Google Scholar] [CrossRef] [PubMed]
- Zheng, D.; Wang, X.; Ju, N.; Wang, Z.; Sui, L.; Wang, L.; Qiao, X.; Cui, W.; Jiang, Y.; Zhou, H.; et al. Immune Responses in Pregnant Sows Induced by Recombinant Lactobacillus johnsonii Expressing the COE Protein of Porcine Epidemic Diarrhea Virus Provide Protection for Piglets against PEDV Infection. Viruses 2021, 14, 7. [Google Scholar] [CrossRef] [PubMed]
- Hu, X.; Wang, Z.; Wang, S.; Sun, H.; Feng, N.; Li, E.; Xia, X.; Hu, G.; Yan, F.; Li, B. Next-Generation Vaccines for Co-Circulating PEDV and TGEV: Integrating Nucleic Acid Platforms, Mucosal Delivery, and AI-Driven Antigen Design. Transbound. Emerg. Dis. 2025, 2025, 2014296. [Google Scholar] [CrossRef]



| Platform | Main Potential Value | Principal Limitation | References |
|---|---|---|---|
| Updated spike subunit vaccines | Practical antigen updating and relatively tractable manufacturing | Limited mucosal induction and possible strain restriction | [25,58] |
| mRNA vaccines | Rapid redesign and flexible in situ antigen expression | Cost, cold-chain requirement, dose optimization, and large-herd application logistics | [51,52,62] |
| Nanoparticle/VLP vaccines | Multivalent antigen display and enhanced B-cell engagement | Manufacturing complexity and insufficient validation of protection breadth | [26,48,53] |
| Viral-vectored vaccines | Active antigen delivery and potential support for local priming | Vector immunity, attenuation stability, biosafety, and regulatory constraints | [18,44,45,54] |
| Recombinant probiotic approaches and plant-derived approaches | Potential relevance for gut-directed or maternal vaccination | Variable potency, standardization, production consistency, and field validation | [50,60,61,63] |
| Mucosal prime–boost or modular strategies | Integration of antigen updating with route-adapted mucosal delivery | Complex schedules, benchmarking difficulty, and implementation challenges | [18,28,40,58,64] |
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Kong, F.; Wu, N.; Liang, S.; Yan, Y. Next-Generation Vaccine Design for Porcine Enteric Coronaviruses: Aligning Antigenic Breadth, Mucosal Immunity, and Translational Evaluation. Vaccines 2026, 14, 498. https://doi.org/10.3390/vaccines14060498
Kong F, Wu N, Liang S, Yan Y. Next-Generation Vaccine Design for Porcine Enteric Coronaviruses: Aligning Antigenic Breadth, Mucosal Immunity, and Translational Evaluation. Vaccines. 2026; 14(6):498. https://doi.org/10.3390/vaccines14060498
Chicago/Turabian StyleKong, Fanzhi, Nannan Wu, Shuxuan Liang, and Yufeng Yan. 2026. "Next-Generation Vaccine Design for Porcine Enteric Coronaviruses: Aligning Antigenic Breadth, Mucosal Immunity, and Translational Evaluation" Vaccines 14, no. 6: 498. https://doi.org/10.3390/vaccines14060498
APA StyleKong, F., Wu, N., Liang, S., & Yan, Y. (2026). Next-Generation Vaccine Design for Porcine Enteric Coronaviruses: Aligning Antigenic Breadth, Mucosal Immunity, and Translational Evaluation. Vaccines, 14(6), 498. https://doi.org/10.3390/vaccines14060498

