1. Introduction
Ireland’s palaeogeographic position during Mississippian times (from 358.9 to 323.2 Ma) was in the tropics. During the early Carboniferous (from 358.9 to 346.7 Ma), global sea levels started to rise, resulting in a marine transgression from the south, until most of the country became a shallow-water carbonate shelf. Extensional tectonism formed deeper water basins locally (e.g., the Shannon Trough and Dublin Basin). Mixed siliciclastic and carbonate sediments were deposited along the margin of the transgressive shelf sea as it spread successively more northwards. In the south of Ireland, terrigeneous sediments continued to accumulate during most of the Tournaisian (from 358.9 to 346.7 Ma) in the South Munster Basin. During the Viséan (from 346.7 to 330.9 Ma), the differentiation into the basinal and shelf areas continued. The carbonate shelf can be traced eastwards across Wales, England, the North Sea, northern France and Belgium into north-west Germany.
The stratigraphy of the Irish Carboniferous is not well constrained outside of regions with outcrops and/or intense mineral exploration. In the North Midlands region, the landscape is dominated by peat bogs and fluvioglacial sediments, limiting the amount of exposure. The majority of the stratigraphic interpretation in the region is informed by drill cores and occasional quarry exposure.
In the study area (which comprises >40,000 km
2), variations in the lithology vertically and laterally between boreholes (facies mosaic of Manifold et al., 2020) [
1] make correlation difficult. To overcome this, micropalaeontological studies were used for the correlation of the lithological packages that define, ultimately, the lithostratigraphic units.
The geological map of the North-West Midlands area, published by the Geological Survey of Ireland in 2019, is supported by borehole logs and samples for micropalaeontological studies [
2,
3]. Original data gathered for the mapping of the North-West Midlands resulted in summary logs for 32 boreholes and highly selective sample sets. The logging focused on the lithostratigraphy, specifically the changes in lithologies. The sampling focused on the biostratigraphy, targeting lithologies in facies suitable for micropalaeontological studies.
The aim of this study was to test whether hyperspectral data can support facies analysis by improving the definition of the stratigraphic boundaries and lateral correlations within and between boreholes.
Hyperspectral image analysis has been widely applied in remote sensing, mapping and mineral characterisation (e.g., [
4,
5,
6]), but it has not yet been applied in the Irish Midlands. This study used short-wavelength infra-red (SWIR) core scans, covering a spectral range from 1050 to 2430 nm.
Clay, mica and carbonate minerals contain diagnostic absorption features in the SWIR range [
7,
8,
9,
10,
11,
12,
13]. The wavelength positions of these absorption features are often directly related to the chemical composition of the mineral(s) [
10,
13], while the intensities (or depths) of the absorption features are a measure of the abundance of the minerals [
13]. For this study, we aimed to define hyperspectral facies using combinations of features extracted from the hyperspectral dataset to characterise lithological variations and identify lithological contacts.
Typical lithological sampling studies, such as, for example, micro-palaeontology or whole-rock geochemistry, have an inherent bias. Micro-palaeontology samples are typically taken in the cleanest limestone to maximise the potential volume of identifiable fossils. Facies descriptions from these sections will often not be representative of the unit. To address this bias, 10 additional thin sections were collected in 2023. These samples were targeted at apparent lithological discrepancies between the original logged lithologies and the defined hyperspectral facies.
2. Lithostratigraphy
GSI-16-101 is a hole collared in the Hillstreet quarry in County Roscommon (
Figure 1) in an under-explored area of the Carboniferous stratigraphy. GSI-16-101 has a reliable lithological log informed by a detailed micropalaeontology [
2] and has been scanned hyperspectrally by the Geological Survey Ireland core scanner. Here, it is an ideal test case for hyperspectral facies applications.
In borehole GSI-16-101, the Ballymore Limestone Formation is represented by two contrasting facies: a lower interval and upper interval (1.5–14 m and 44–59.3 m), which consist of dark-grey, well-bedded, nodular, fine-grained, argillaceous, bioclastic limestone interbedded with black calcareous shale, and a middle interval (14–44 m) of light-grey, coarse-grained, bioclastic limestone.
The Oakport Limestone Formation consists of light-grey, massive, clean, coarse-grained, bioclastic limestone with two thick intervals of darker-grey, fine-grained, argillaceous limestone between 132–151 m and 219.5–245 m. The latter show bioturbation, chert nodules and occasional fenestral fabrics with pedogenic structures (e.g., rootlets). The top of the formation is placed at the incoming of darker-grey, coarser-grained limestone with chert nodules of the Ballymore Limestone Formation at 59.3 m [
2].
The Kilbryan Limestone Formation consists of dark-grey, fine-grained, argillaceous, nodular, bioclastic limestone alternating with dark, calcareous mudstone, which is of a higher proportion in the lower part. Bioturbation can be intense in places. The upper boundary of the Kilbryan Limestone Formation and the contact with the overlying Oakport Limestone Formation at 297.2 m is sharp, with the incoming of massive, clean, light-grey, dolomitised limestone equivalents [
2].
The distal lateral Waulsortian limestone facies in this hole is differentiated from the succeeding Kilbryan Limestone Formation by its higher proportion of limestone to mudstone and distinct, clean, nodular micrite patches. In this hole, a thick interval of clean, coarser-grained limestone is present, which is interpreted as a distal lateral equivalent to the Waulsortian [
2].
The Ballysteen Formation in this comprises light-grey and dark-grey, fine-grained, argillaceous, nodular, bioclastic limestone alternating with black, calcareous and non-calcareous mudstone. The limestone is often bioturbated. The upper contact of the Ballysteen Formation with the overlying distal lateral Waulsortian limestone facies occurs at c.398 m [
2,
3].
The Moathill Formation comprises massive, light-grey, non-calcareous sandstone, dark-grey mudstone and thin, bioclastic limestone. The top of the Moathill Formation at 456 m marks a sharp boundary with the succeeding limestone-dominant Ballysteen Limestone Formation [
2].
The Meath Formation comprises an alternation of calcareous, cross-bedded sandstones with rip-up clasts, siltstone and black, non-calcareous mudstone. The lower part of the formation has gypsum nodules and bands [
2].
In this borehole, the Boyle Sandstone Formation comprises greenish-grey sandstone, with quartz pebbles and black-shale beds. The upper contact of the Boyle Sandstone Formation with the overlying Meath Formation at 500.9 m is sharp and defined by the presence of the first marine bed with corals [
2].
3. Materials and Methods
Geological Survey Ireland maintains a SisuROCK core-scanning suite. The SWIR camera is manufactured by Specim, and it measures 288 bands from 985.64 nm to 2587.07 nm.
The drillhole was scanned box by box and the output files were processed using Python libraries: NumPy [
14], Spectral Python [
15] and elements of Hylite [
4]. The raw data from each box were corrected to reflectance using white and dark references captured during each scan, hull-corrected [
16] and denoised using a convex-hull quotient [
16], which removes the background from the spectra and enables the easier identification of the features. The smoothed dataset was filtered with a Savitzky–Golay filter implementation in the SciPy library [
17].
A mask in the shape of the core box is produced via a thresholded Pearson correlation coefficient between the continuum-removed spectrum and a continuum-removed example spectrum of the wooden core box. The image is clipped to the extent of the mask to remove the scanning table from the image. The mask for each box is visually examined to ensure that no core is masked, and that no extraneous material is left unmasked.
The chemical bonds present in a mineral can determine whether energy of different wavelengths is absorbed or reflected [
7,
8,
9,
10,
11]. When energy is absorbed, the resulting reflectance spectrum will have absorption features: troughs of varying depths and wavelength positions determined via the mineral chemistry of the sample. For this study, the presence or absence of a feature in a particular wavelength range was determined using the Hylite absorption feature-finding algorithm [
4]. This algorithm finds the
n deepest features, noting that the larger the value of
n, the more likely it is that features may be identified, which are only an effect of noise. For this study, we used
n = 5, and if a feature was not found, then it was considered absent. This study used this minimum-wavelength-mapping technique, identifying local minima, to study the 2320 nm feature and the 2200 nm feature (
Figure 2) [
13].
The 2200 nm feature is diagnostic for a wide range of minerals: the kaolin group, muscovite, phengite, paragonite, tourmaline, jarosite and prehnite [
18,
19,
20,
21,
22]. The most common position of this feature in the study dataset is at 2205 nm, which is in the area most associated with the kaolin group [
18], although kaolinite absorptions must show a doublet feature, which this study did not test for. Some spectra display a feature around 2190 nm, which would be in the muscovite range [
22]. The other minerals are unlikely to be present in these limestone rocks. The 2200 nm feature is interpreted here to represent argillaceous material, regardless of the specific mineral, as most minerals with diagnostic features in this range are di-octahedral sheet silicates.
The 2320–2345 nm feature is diagnostic for carbonate minerals [
7,
10,
13]. The wavelength positions of this feature are affected by the replacement of Ca with Mg, Fe and/or Mn. Increasing concentrations of Mg and Fe push the position to shorter. Magnesium carbonates are more common in the Irish Carboniferous than iron carbonates; thus, we interpreted the wavelength position to indicate calcitic or dolomitic compositions of limestone.
Figure 2.
Continuum-removed spectra of calcite and dolomite from the JPL ECOSTRESS library [
23]. The 2320 nm and 2200 nm positions are displayed as red vertical lines.
Figure 2.
Continuum-removed spectra of calcite and dolomite from the JPL ECOSTRESS library [
23]. The 2320 nm and 2200 nm positions are displayed as red vertical lines.
The process for determining the wavelength position starts with running the absorption feature-finding algorithm through each pixel in the smoothed image. Each spectrum is inverted so that the absorption troughs can be treated as peaks, identifying the local minima. The smoothed image is used for the absorption feature-finding algorithm because noise in the reflectance dataset can cause the misidentification of a peak’s presence or absence. If there is no feature in the wavelength range of interest, then the pixel is masked out. If a feature is present in the smoothed dataset pixel, then the true wavelength position is calculated from the same pixel in the reflectance dataset. The continuum is removed for a specific wavelength range relevant to the feature, and the simple quadratic method [
24] is used to calculate the true wavelength of the feature.
We can define hyperspectral facies by combining elements of the 2200 nm and 2320 nm features, using a decision tree classifier (
Figure 3). These facies will be highly sensitive to carbonate and clay mineralogy. We developed 10 facies (
Table 1) that we consider applicable to the Irish Carboniferous rocks based on the presence or absence of the 2200 nm feature and the wavelength position of the 2320 nm feature.
In our dataset, the spatial pixel size is often larger than the grain size, which means that the recorded spectrum often represents a mixture of multiple grains, potentially multiple minerals. If the 2320 nm feature is present, then the pixel is clearly calcareous (contains carbonate minerals), but a spectrum containing both the 2320 nm feature and the 2200 nm feature is likely to be a mixture of carbonate minerals and argillaceous material.
The next step in assigning a pixel to a facies is to determine whether it is “clean” or “muddy”. In this context, we define the term muddy to mean that there is a presence of argillaceous material in the form of sheet silicates (mainly clay minerals), as opposed to clean, which means that argillaceous material is absent or is present in such small amounts that it does not produce a spectral response. The presence of a 2200 nm feature in a spectrum containing the 2320 nm feature defines it as muddy and spectra without a 2200 nm feature are clean.
Once a pixel is determined to be clean or muddy, the true wavelength position of the 2320 nm feature is calculated, and the facies is assigned using the values in
Table 1.
The wavelength positions of carbonate absorption features in SWIR data have been shown to be unaffected by grain size variation [
25,
26]. For this reason, we consider it appropriate to use the wavelength position of the 2320 nm feature as part of the facies definition.
The final two facies we define apply to pixels that do not have a 2320 nm feature present. One interpretation of the absence of the 2320 nm feature is that the pixel is non-calcareous, and this is likely to be the case for the lowest sandstone units in the hole. However, the 2320 nm feature has been observed to be absent where the rock is known to be carbonaceous from thin sections or HCl reaction. We suggest that spectral quenching [
25,
27] resulting from the presence of organic material is obscuring the carbonate absorption signatures in these regions. Pixels with absent 2320 nm features are categorised into one of two facies, depending on the presence or absence of the 2200 nm feature.
A suite of 27 samples was collected from GSI-16-101, and thin sections were created for each to determine the age through micropaleontological analysis [
2]. These samples were not collected as part of this project and so were subject to the usual sampling bias. The samples were collected based on their suitability to produce microfauna of good quality and quantity. However, the descriptions of the thin sections can be used to verify the spectral data. Five representative samples will be shown in detail, while the rest are tabulated in
Supplementary Material Table S1.
An additional 10 samples were collected for this project, based on our hyperspectral results. As mentioned above, the location of each sample targeted apparent discrepancies between the original logged lithologies (as described in the log:
Figure 4) and the HS results.
To differentiate calcite and dolomite, one half of each thin section was treated with Potassium Hexacyanoferrate and Alizarin Red, as described in [
28].
5. Discussion and Synthesis
5.1. Interpretation
We note that the match between the predicted facies from the thin-section descriptions and the observed hyperspectral facies is not perfect. It has proven particularly difficult to predict quenched facies from thin sections, and we attribute much of this to the sampling bias used for most of our thin sections—the sampling of the cleanest intervals. Where other predictions failed, we attribute this to comparing a prediction from a small and possibly non-representative sample in this section to the dominant lithology across a heterogenous area.
We find that there exists a good and easily recognisable correlation between the litho- and biostratigraphic units and their HS facies signatures in the Irish North Midlands region. The depth of the lithological boundaries does not perfectly align with clear changes in the hyperspectral facies. We interpret this as a result of the uncertainty in defining a precise boundary at a specific depth in a gradually changing lithology and the bias caused by different workers. This bias is enhanced by the lack of clearly defined stratigraphic boundaries for most of the formations in the literature. Despite the increased volume of non-carbonate and organic material in the Tournaisian, the HS imagery allows for the quick and easy differentiation of carbonate facies within the whole succession, and more subtle variations can be seen in the Tournaisian. HS facies mapping can help to illustrate the arbitrary nature of unit boundaries by showing clearly—and more precisely—the subtle changes in the lithological composition across these boundaries.
5.2. Regional Correlation
Following the detailed study of the hyperspectral facies distribution in drillhole GSI-16-101, the same techniques were applied to three other holes in the same fault block (
Figure 1), which each had equally well-constrained litho- and biostratigraphic units. These boreholes are GSI-16-002 (Castlemine), GSI-16-003 (Carrowreagh) and GSI-16-100 (Hillstreet 1). Hillstreet 2 was drilled at a c.20 m distance from Hillstreet 1, due to technical problems at the Hillstreet 1 location. The Carrowreagh borehole shows a condensed succession in the western part of the fault block. This is attributed to its position higher up on the shelf, in a shallower-water environment. The Castlemine borehole was drilled in the footwall of the Strokestown Fault, the bounding fault with the Lower Palaeozoic Inlier to the east.
As shown in
Figure 12, two different lithofacies are recognised in the Ballymore Limestone Formation (MFZ 11). These two lithofacies can be recognised in the HS facies with clean dolomitic calcite facies separating upper and lower muddy calcite facies. The same facies distribution can be seen in boreholes GSI-16-100 (Hillstreet 1) and GSI-16-003 (Carrowreagh). In borehole GSI-16-002 (Castlemine), the borehole is collared in the middle clean calcite facies.
The Oakport Limestone Formation (MFZ 9 and MFZ 10) shows a similar triple partition in boreholes GSI-16-101, GSI-16-002 and GSI-16-003. The upper and lower parts consist of pale-grey, fine-grained, well-sorted, bioclastic limestone, and the middle part consists of dark-grey, fine-grained, massive limestone. This division can be seen in the HS response. A muddy calcite/dolomite facies separates upper and lower clean calcite/dolomitic calcite facies. In borehole GSI-16-100, Hillstreet 1, only the upper unit was drilled.
The Kilbryan Limestone Formation (MFZ 8) shows a muddy dolomitic calcite facies with QCS facies in boreholes GSI-16-101 and GSI-16-002. In borehole GSI-16-003, Carrowreagh, the Kilbryan Limestone Formation comprises c.20 m of dolomitised, dark-grey, fine-grained, argillaceous limestone. The HS response shows a dominantly clean dolomitic calcite–clean dolomitic calcite facies. Although dolomitic in all three boreholes, the cleaner limestone in the Carrowreagh borehole was drilled higher up on the shelf, with less “mud” input from the tectonic high east of the Strokestown Fault.
The limestone interpreted as distal Waulsortian facies (MFZ 8) is distinct by its litho-facies. In borehole GSI-16-003, Carrowreagh, this consists of pale-grey, medium-grained, moderately sorted, bioclastic limestone with argillaceous seams and stylolites. In the boreholes Hillstreet and Castlemine, the lithology also includes evaporites and a higher proportion of mud (argillaceous) in the limestone. In the HS response, this lateral variation is well defined, whereas in traditional core logging, it is in fact difficult to notice.
The other Tournaisian units (from MFZ 8 to MFZ 3/4), the Ballysteen Limestone Formation, Moathill Formation, Meath Formation and at least parts of the Boyle Sandstone Formation, comprise various lithologies, which all merge into a very heterogenous HS response in the correlation diagram (
Figure 12). However, this is a function of the scale at which this figure can be shown here. Much more detail can be retrieved from the HS imagery at higher resolution. The most noticeable feature in the HS response can be seen in the Castlemine borehole in the Moathill Formation, with a high proportion of QC facies (white).
To summarise, a transition in the facies distribution from west to east can be seen in these four holes. The Ballymore Limestone Formation consists of intercalations of muddy and clean calcite facies, but the pattern is not consistent between holes, suggesting that these facies are not laterally continuous. The Oakport Limestone Formation becomes thicker from west to east, but it consistently has clean calcite facies at the top and base of the unit, with a region of muddy calcite facies in the centre. The muddy calcite centre becomes more quenched towards the east, and the lower clean region is more dolomitic in the east. The Kilbryan is dominantly clean dolomitic calcite in the west but transitions to dominantly quenched facies with small intervals of clean calcite facies becoming smaller further east. The distal Waulsortian facies interval is clean in the west, both calcite and dolomitic calcite facies, but it transitions eastward into mixed quenched and muddy calcite facies.
5.3. Discussion
This study has shown that hyperspectral facies analysis applied to drill cores can identify lithological variations in composition in the carbonate/muddy carbonate/non-carbonate range. This can be used for accurate and much more detailed descriptions of the lithologies of calcareous drill cores. Because every pixel is treated the same way, the analysis itself is objective and overcomes subjective bias from traditional approaches.
The HS facies we defined broadly agree with the thin-section interpretations of the lithologies, and where they do not, the lithologies are quite variable, and a thin section taken nearby would also likely have a different interpretation.
Most interestingly, the hyperspectral facies can pick out details over a broad scale that are only otherwise apparent in the thin section.
The HS facies are highly biased towards the mineralogy of the geological materials, and other lithological features that are usually used in defining lithological facies, such as grain size, texture, fossils and bioclasts, will not have significant impacts on the hyperspectral facies classification.
While not a replacement for a lithological log by an experienced geologist, hyperspectral facies can make an excellent first-pass interpretation of a hole and will be useful to a geologist before, during and after lithological logging.
A hole can be processed using these techniques relatively quickly; thus, hyperspectral facies analysis will lend itself well to regional correlations across multiple holes with specific questions followed up on with a lithological log.
The technique could be enhanced by extending the decision tree to include features extracted from other spectral ranges, which has the potential to overcome spectral quenching or improve the identification of iron carbonates. The technique could also be adapted to produce automated correlations between multiple holes, which would be of great benefit for exploration activities in mature, data-rich prosect areas.