Identification of CYP450 Family Members and Their Gonadal Expression Profiles in Exopalaemon carinicauda
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Ethical Statement
2.2. Characteristics of the CYP450 Family Members
2.3. Phylogenetic Analysis of CYP450 Family Members in E. carinicauda
2.4. Analysis of Structural Characteristics of CYP450 Genes
2.5. Transcriptome Data Sources and Analysis
3. Results
3.1. Identification of CYP450 Gene Family Members and Protein Characterization
3.2. Phylogenetic Analysis of CYP450 Family Members
3.3. Gene Structure Analysis
3.4. Protein Motif and Domain Analysis
3.5. Chromosomal Localization Analysis
3.6. Differentially Expressed CYP450 Family Members Between Testes and Ovaries
3.7. Expression Trends of CYP450 Members After Eyestalk Ablation
4. Discussion
4.1. The CYP450 Family in E. carinicauda Is Evolutionarily Conserved, with Significant Expansion in Specific Subfamilies
4.2. CYP450 Family Members in E. carinicauda Might Play Important Roles in Crustacean Reproduction
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Gene ID | Gene Name | Protein Length | Molecular Weight/kDa | PI | Instability Index | Grand Average of Hydropathicity | Aliphatic Index |
|---|---|---|---|---|---|---|---|
| Chr01.g04253.m1 | CYP450_2L1_1 | 498 | 57.31 | 5.71 | 43.16 | −0.180 | 89.66 |
| Chr12.g35711.m1 | CYP450_2L1_2 | 492 | 56.41 | 5.95 | 45.41 | −0.145 | 95.67 |
| Chr12.g35690.m1 | CYP450_2L1_3 | 492 | 56.67 | 5.73 | 54.64 | −0.198 | 93.90 |
| Chr17.g46067.m1 | CYP450_2L1_4 | 500 | 57.08 | 6.59 | 34.62 | −0.185 | 88.36 |
| Chr18.g48525.m1 | CYP450_2L1_5 | 892 | 100.75 | 8.32 | 48.26 | −0.490 | 80.78 |
| Chr20.g53478.m1 | CYP450_2L1_6 | 208 | 24.06 | 9.46 | 57.15 | −0.023 | 91.88 |
| Chr20.g53494.m1 | CYP450_2L1_7 | 297 | 34.15 | 5.35 | 39.37 | −0.180 | 85.72 |
| Chr20.g53477.m1 | CYP450_2L1_8 | 489 | 56.56 | 5.58 | 44.46 | −0.151 | 90.72 |
| Chr29.g71751.m1 | CYP450_2L1_9 | 451 | 52.01 | 6.15 | 37.76 | −0.283 | 88.82 |
| Chr37.g84839.m1 | CYP450_2L1_10 | 494 | 56.40 | 5.59 | 44.90 | −0.199 | 93.72 |
| Chr37.g86113.m1 | CYP450_2L1_11 | 494 | 57.16 | 6.78 | 41.84 | −0.202 | 89.39 |
| Chr37.g86193.m1 | CYP450_2L1_12 | 537 | 61.83 | 6.51 | 39.56 | −0.298 | 87.19 |
| Chr38.g86722.m1 | CYP450_2L1_13 | 495 | 56.69 | 6.69 | 35.81 | −0.173 | 96.30 |
| Chr41.g91361.m1 | CYP450_2L1_14 | 495 | 57.07 | 6.36 | 35.91 | −0.208 | 88.22 |
| Chr09.g28246.m1 | CYP450_2U1 | 496 | 57.66 | 7.77 | 39.05 | −0.292 | 87.00 |
| Chr27.g67194.m1 | CYP450_306A1 | 605 | 69.37 | 5.83 | 44.47 | −0.294 | 90.41 |
| Chr33.g78411.m1 | CYP450_307A1 | 529 | 60.38 | 6.30 | 40.00 | −0.261 | 85.29 |
| Chr27.g67191.m1 | CYP450_18A1 | 478 | 54.00 | 9.37 | 52.48 | −0.316 | 79.14 |
| Chr11.g31708.m1 | CYP450_3A2 | 501 | 57.02 | 6.40 | 45.28 | −0.091 | 87.64 |
| Chr02.g07043.m1 | CYP450_3A6 | 576 | 65.30 | 8.82 | 31.93 | −0.214 | 87.57 |
| Chr11.g31707.m1 | CYP450_3A8 | 452 | 51.73 | 5.50 | 48.44 | −0.120 | 87.59 |
| Chr12.g34874.m1 | CYP450_3A19 | 129 | 14.59 | 5.91 | 33.78 | −0.118 | 97.52 |
| Chr13.g36729.m1 | CYP450_3A24 | 847 | 92.88 | 6.73 | 61.84 | −0.316 | 79.98 |
| Chr22.g58734.m1 | CYP450_3A25 | 535 | 61.29 | 6.40 | 38.51 | −0.105 | 94.06 |
| Chr03.g10506.m1 | CYP450_3A29_1 | 555 | 63.90 | 8.01 | 34.01 | −0.157 | 96.45 |
| Chr03.g10508.m1 | CYP450_3A29_2 | 534 | 61.02 | 8.72 | 35.91 | −0.094 | 96.93 |
| Chr03.g10507.m1 | CYP450_3A29_3 | 563 | 64.38 | 8.86 | 37.47 | −0.162 | 91.58 |
| Chr26.g66158.m1 | CYP450_3A29_4 | 552 | 62.77 | 8.80 | 44.62 | −0.231 | 93.04 |
| Chr19.g50915.m1 | CYP450_3A31 | 880 | 98.48 | 6.16 | 47.50 | −0.389 | 83.07 |
| Chr03.g10509.m1 | CYP450_3A40 | 535 | 61.56 | 8.55 | 36.49 | −0.101 | 99.98 |
| Chr12.g34876.m1 | CYP450_3A41_1 | 413 | 47.03 | 9.03 | 43.09 | −0.101 | 85.71 |
| Chr12.g34871.m1 | CYP450_3A41_2 | 500 | 56.87 | 8.38 | 40.29 | −0.089 | 89.72 |
| Chr12.g34879.m1 | CYP450_3A41_3 | 389 | 43.99 | 8.04 | 41.38 | 0.027 | 92.52 |
| Chr12.g34879.m1 | CYP450_3A41_4 | 500 | 56.84 | 7.53 | 39.89 | −0.102 | 88.96 |
| scaffold137.g98188.m1 | CYP450_6A13 | 550 | 61.91 | 8.87 | 48.07 | −0.008 | 94.71 |
| Chr18.g48378.m1 | CYP450_9E2_1 | 520 | 59.35 | 8.57 | 42.29 | −0.156 | 88.69 |
| Chr22.g58666.m1 | CYP450_9E2_2 | 506 | 58.28 | 6.45 | 32.47 | −0.108 | 84.01 |
| Chr24.g62201.m1 | CYP450_4C1_1 | 269 | 31.07 | 5.35 | 40.98 | −0.499 | 86.69 |
| Chr29.g72426.m1 | CYP450_4C1_2 | 519 | 59.77 | 6.88 | 42.98 | −0.250 | 93.53 |
| Chr31.g75635.m1 | CYP450_4C1_3 | 520 | 60.24 | 6.36 | 39.07 | −0.399 | 86.98 |
| Chr36.g84414.m2 | CYP450_4C1_4 | 612 | 70.35 | 7.23 | 43.98 | −0.418 | 88.09 |
| Chr36.g83447.m1 | CYP450_4C1_5 | 522 | 60.35 | 8.65 | 36.65 | −0.227 | 92.26 |
| Chr36.g83037.m1 | CYP450_4C1_6 | 515 | 59.31 | 7.58 | 43.01 | −0.230 | 96.78 |
| Chr29.g72429.m1 | CYP450_4C1_7 | 519 | 59.67 | 7.16 | 39.28 | −0.217 | 95.39 |
| Chr20.g53902.m1 | CYP450_4C3_1 | 254 | 29.57 | 9.43 | 51.40 | −0.116 | 96.77 |
| Chr24.g62199.m1 | CYP450_4C3_2 | 382 | 44.42 | 6.18 | 35.60 | −0.292 | 86.75 |
| Chr04.g14492.m1 | CYP450_12A2 | 648 | 74.31 | 9.18 | 54.47 | −0.451 | 83.81 |
| Chr17.g46655.m1 | CYP450_44 | 322 | 36.84 | 6.57 | 44.50 | −0.182 | 92.30 |
| Chr08.g25434.m1 | CYP450_49A1_1 | 518 | 59.58 | 9.38 | 40.03 | −0.333 | 87.70 |
| Chr09.g27757.m1 | CYP450_49A1_2 | 537 | 61.34 | 8.67 | 41.46 | −0.246 | 91.25 |
| Chr09.g27435.m1 | CYP450_49A1_3 | 538 | 61.55 | 8.96 | 49.34 | −0.382 | 81.34 |
| Chr09.g27758.m1 | CYP450_49A1_4 | 525 | 60.05 | 8.89 | 43.54 | −0.221 | 93.92 |
| Chr38.g86333.m1 | CYP450_49A1_5 | 540 | 62.20 | 8.62 | 44.34 | −0.384 | 79.46 |
| Chr38.g86332.m1 | CYP450_49A1_6 | 556 | 64.13 | 8.57 | 48.54 | −0.365 | 78.72 |
| Chr16.g43710.m1 | CYP450_49A5_7 | 524 | 60.11 | 8.82 | 45.51 | −0.390 | 85.04 |
| Chr30.g74098.m2 | CYP450_302A1_1 | 538 | 61.13 | 8.72 | 45.30 | −0.321 | 91.51 |
| Chr31.g74724.m1 | CYP450_302A1_2 | 260 | 29.13 | 9.51 | 57.62 | −0.079 | 95.69 |
| Chr01.g00149.m1 | CYP450_315A1 | 567 | 63.29 | 9.28 | 49.58 | −0.322 | 83.05 |
| Gene ID | Localization |
|---|---|
| CYP450_18A1, CYP450_4C1_1, CYP450_3A24, CYP450_12A2 | Nucleus |
| CYP450_2L1_2, CYP450_2L1_3, CYP450_2L1_6, CYP450_2L1_7, CYP450_2L1_8, CYP450_2L1_9, CYP450_2L1_10, CYP450_2L1_11, CYP450_3A31, CYP450_2L1_14, CYP450_9E2_1, CYP450_3A8, CYP450_3A19, CYP450_44, CYP450_49A1_1, CYP450_49A1_2, CYP450_49A1_3, CYP450_49A1_4, CYP450_49A1_5, CYP450_49A1_6, CYP450_49A5_7, CYP450_302A1_1, CYP450_302A1_2, CYP450_315A1 | Cytoplasm |
| CYP450_2L1_1, CYP450_2L1_4, CYP450_2L1_5, CYP450_2L1_12, CYP450_2L1_13, CYP450_2U1, CYP450_306A1, CYP450_307A1, CYP450_3A2, CYP450_3A6, CYP450_3A25, CYP450_3A29_1, CYP450_3A29_2, CYP450_3A29_3, CYP450_3A29_4, CYP450_3A40, CYP450_3A41_1, CYP450_3A41_2, CYP450_3A41_3, CYP450_3A41_4, CYP450_6A13, CYP450_9E2_2, CYP450_4C1_2, CYP450_4C1_3, CYP450_4C1_4, CYP450_4C1_5, CYP450_4C1_6, CYP450_4C1_7, CYP450_4C3_1, CYP450_4C3_2, | Cytomembrane |
| Motif | Protein Sequence | No. of AA |
|---|---|---|
| Motif 1 | NKKDIHPYAYLPFGAGPRNCIGERFARMELKIFLARL | 37 |
| Motif 2 | DPWMNTMLLNLRGQKWKSVRSLLTPTFSSGKMKDMFHLVNE | 41 |
| Motif 3 | DTTSTTLAWTLYLLAKHPEIQ | 21 |
| Motif 4 | DPKYWPDPEEFDPERFL | 17 |
| Motif 5 | GPLTYEDLMELKYLEAVIKEVLRLYPPVP | 29 |
| Motif 6 | GVGRELTEDTVLGGYRIPKGT | 21 |
| Motif 7 | TLDVICECAFGLECNAQRDEN | 21 |
| Motif 8 | YMGLKPFLVVCDPELIRQILIKDFDHFTNRP | 31 |
| Motif 9 | EAGIIGSNGDVWVNNRRFALRHLRDLGMGKSSLEEAIQEEARILVEDFKK | 50 |
| Motif 10 | QQRQARPWLQPDILFKLLGYAKEHDACLKVLHDMSYKCIRERRKQYQERK | 50 |
| Motif 11 | PGPPGLPILGS | 11 |
| Motif 12 | KKVLTDEEIIANVDLFMLAGY | 21 |
| Motif 13 | MDQVTLEFMERISSFQDEHGEMPEDFQVELYKWALESVSLVALNRRLGCL | 50 |
| Motif 14 | GLSLFPKETQFFKNVVEETLAARRKGTKRGDFLDLLLEAQSGEDLGDPSK | 50 |
| Motif 15 | GKPVEIPWSLNVAVLNVIWKMVAGKRYDM | 29 |
| Motif 16 | KYGDIFSWKLGGQIFVFICDY | 21 |
| Motif 17 | EIIDEHKKNFDPDNPKDYIDAYLIEMKKKTNEAGS | 35 |
| Motif 18 | CTKDYKIPGTNLTVPKGLSVQVPVYSIHH | 29 |
| Motif 19 | GLLIENGEEWKRVRSRVQTPMMKPKNVNAYL | 31 |
| Motif 20 | HKFWRKMVEEYGPIVRLDMPGMPPLVFITDPEDCEMLVRSTMDNPTRPG | 49 |
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Share and Cite
Jia, S.; Su, Y.; Hou, Y.; Gong, K.; Pan, X.; Lv, J.; Li, J. Identification of CYP450 Family Members and Their Gonadal Expression Profiles in Exopalaemon carinicauda. Animals 2026, 16, 1201. https://doi.org/10.3390/ani16081201
Jia S, Su Y, Hou Y, Gong K, Pan X, Lv J, Li J. Identification of CYP450 Family Members and Their Gonadal Expression Profiles in Exopalaemon carinicauda. Animals. 2026; 16(8):1201. https://doi.org/10.3390/ani16081201
Chicago/Turabian StyleJia, Shaoting, Yichen Su, Yashi Hou, Kezhi Gong, Xiaotong Pan, Jianjian Lv, and Jitao Li. 2026. "Identification of CYP450 Family Members and Their Gonadal Expression Profiles in Exopalaemon carinicauda" Animals 16, no. 8: 1201. https://doi.org/10.3390/ani16081201
APA StyleJia, S., Su, Y., Hou, Y., Gong, K., Pan, X., Lv, J., & Li, J. (2026). Identification of CYP450 Family Members and Their Gonadal Expression Profiles in Exopalaemon carinicauda. Animals, 16(8), 1201. https://doi.org/10.3390/ani16081201

