The Mitochondrial Genome of Cylicocyclus elongatus (Strongylida: Strongylidae) and Its Comparative Analysis with Other Cylicocyclus Species
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Parasites and Molecular Identification of Specimens
2.2. The Amplification and Annotation of C. elongatus Complete Mt Genome
2.3. Comparative Analyses of Cylicocyclus Species and P. imparidentatum Mt Genomes
2.4. Phylogenetic Analyses of 23 Strongylidae Nematodes
3. Results
3.1. The Annotation of C. elongatus Complete Mt Genome
3.2. Comparative Analyses of Mt Genomes among Cylicocyclus Species and P. imparidentatum
3.3. Phylogenetic Analyses of 23 Species in the Family Strongylidae
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Genes/Regions | Positions and Sequence Lengths (bp) | Initiation and Stop Codons | Intergenic Nucleotides |
---|---|---|---|
cox1 | 1–1578 (1578) | ATT/TAA | 0 |
tRNA-Cys (C) | 1579–1634 (56) | – | 0 |
tRNA-Met (M) | 1648–1706 (59) | – | 13 |
tRNA-Asp (D) | 1707–1765 (58) | – | 0 |
tRNA-Gly (G) | 1787–1843 (57) | – | 22 |
cox2 | 1844–2539 (696) | ATT/TAA | 0 |
tRNA-His (H) | 2540–2593 (54) | – | 0 |
rrnL | 2601–3568 (968) | – | 7 |
nad3 | 3572–3907 (336) | ATT/TAA | 4 |
nad5 | 3918–5501 (1584) | ATT/TAG | 10 |
tRNA-Ala (A) | 5501–5556 (56) | – | −1 |
LNCR | 5557–5842 (286) | – | 0 |
tRNA-Pro (P) | 5843–5897 (55) | – | 0 |
tRNA-Val (V) | 5931–5985 (55) | – | 33 |
nad6 | 5986–6420 (435) | ATT/TAA | 0 |
nad4L | 6473–6706 (234) | ATT/TAA | 52 |
tRNA-Trp (W) | 6732–6787 (56) | – | 21 |
tRNA-Glu (E) | 6815–6874 (60) | – | 27 |
rrnS | 6877–7575 (699) | – | 2 |
tRNA-SerUCN (S2) | 7576–7631 (56) | – | 0 |
tRNA-Asn (N) | 7630–7684 (55) | – | −2 |
tRNA-Tyr (Y) | 7693–7748 (56) | – | 8 |
nad1 | 7749–8621 (873) | TTG/TAA | 0 |
atp6 | 8632–9231 (600) | ATT/TAA | 10 |
tRNA-Lys (K) | 9248–9309 (62) | – | 16 |
tRNA-LeuUUR (L2) | 9328–9382 (55) | – | 18 |
tRNA-SerAGN (S1) | 9383–9435 (53) | – | 0 |
nad2 | 9436–10,281 (846) | TTG/TAA | 0 |
tRNA-Ile (I) | 10,288–10,346 (59) | – | 6 |
tRNA-Arg (R) | 10,374–10,436 (63) | – | 27 |
tRNA-Gln (Q) | 10,444–10,498 (55) | – | 7 |
tRNA-Phe (F) | 10,505–10,559 (55) | – | 6 |
cytb | 10,560–11,672 (1113) | ATT/TAA | 0 |
tRNA-LeuCUN (L1) | 11,683–11,737 (55) | – | 11 |
cox3 | 11,738–12,506 (769) | ATT/T | 0 |
tRNA-Thr (T) | 12,507–12,564 (58) | – | 0 |
nad4 | 12,565–13,794 (1230) | TTG/TAA | 0 |
SNCR | 13,795–13,875 (81) | – | 0 |
Total size (bp) | 13,875 | – |
Species | Identity Nts (%) | ||||||
---|---|---|---|---|---|---|---|
C. el | C. as | C. i | C. au | C. n | C. r | P. i | |
Total Size (bp) | 13,828 | 13,817 | 13,876 | 13,836 | 13,831 | 13,846 | 13,875 |
C. as | 87.1 | – | – | – | – | – | – |
C. i | 88.1 | 88.2 | – | – | – | – | – |
C. au | 87.2 | 87.4 | 89.6 | – | – | – | – |
C. n | 87.1 | 90.7 | 88.0 | 87.2 | – | – | – |
C. r | 87.4 | 90.7 | 88.0 | 87.6 | 89.4 | – | – |
P. i | 84.3 | 82.9 | 83.6 | 82.9 | 83.0 | 83.3 | – |
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Gao, Y.; Zhang, Z.; Wang, C.; Zhao, K. The Mitochondrial Genome of Cylicocyclus elongatus (Strongylida: Strongylidae) and Its Comparative Analysis with Other Cylicocyclus Species. Animals 2022, 12, 1571. https://doi.org/10.3390/ani12121571
Gao Y, Zhang Z, Wang C, Zhao K. The Mitochondrial Genome of Cylicocyclus elongatus (Strongylida: Strongylidae) and Its Comparative Analysis with Other Cylicocyclus Species. Animals. 2022; 12(12):1571. https://doi.org/10.3390/ani12121571
Chicago/Turabian StyleGao, Yuan, Zhonghuai Zhang, Chunren Wang, and Kai Zhao. 2022. "The Mitochondrial Genome of Cylicocyclus elongatus (Strongylida: Strongylidae) and Its Comparative Analysis with Other Cylicocyclus Species" Animals 12, no. 12: 1571. https://doi.org/10.3390/ani12121571