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Assessing Transcriptional Responses to Light by the Dinoflagellate Symbiodinium
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Omics Analysis for Dinoflagellates Biology Research

by 1,2,3, Fangzhong Wang 4,* and Weiwen Zhang 1,2,3,4,*
1
Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin 300072, China
2
Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin 300072, China
3
Collaborative Innovation Center of Chemical Science and Engineering, Tianjin 300072, China
4
Center for Biosafety Research and Strategy, Tianjin University, Tianjin 300072, China
*
Authors to whom correspondence should be addressed.
Microorganisms 2019, 7(9), 288; https://doi.org/10.3390/microorganisms7090288
Received: 9 July 2019 / Revised: 20 August 2019 / Accepted: 21 August 2019 / Published: 23 August 2019
(This article belongs to the Special Issue Dinoflagellate Biology in the Omics Era)
Dinoflagellates are important primary producers for marine ecosystems and are also responsible for certain essential components in human foods. However, they are also notorious for their ability to form harmful algal blooms, and cause shellfish poisoning. Although much work has been devoted to dinoflagellates in recent decades, our understanding of them at a molecular level is still limited owing to some of their challenging biological properties, such as large genome size, permanently condensed liquid-crystalline chromosomes, and the 10-fold lower ratio of protein to DNA than other eukaryotic species. In recent years, omics technologies, such as genomics, transcriptomics, proteomics, and metabolomics, have been applied to the study of marine dinoflagellates and have uncovered many new physiological and metabolic characteristics of dinoflagellates. In this article, we review recent application of omics technologies in revealing some of the unusual features of dinoflagellate genomes and molecular mechanisms relevant to their biology, including the mechanism of harmful algal bloom formations, toxin biosynthesis, symbiosis, lipid biosynthesis, as well as species identification and evolution. We also discuss the challenges and provide prospective further study directions and applications of dinoflagellates. View Full-Text
Keywords: dinoflagellates; genomics; transcriptomics; proteomics; metabolomics; harmful algal blooms; toxin; symbiosis; lipid biosynthesis dinoflagellates; genomics; transcriptomics; proteomics; metabolomics; harmful algal blooms; toxin; symbiosis; lipid biosynthesis
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Bi, Y.; Wang, F.; Zhang, W. Omics Analysis for Dinoflagellates Biology Research. Microorganisms 2019, 7, 288.

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