Longitudinal Analysis of the Microbiota Composition and Enterotypes of Pigs from Post-Weaning to Finishing
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Description: Supplementary Materials: The following are available online at www.mdpi.com/xxx/s1, Figure S1: Experimental design, Figure S2: Distribution of samples across sex, time points, replicates, and type of analysis, Figure S3: Non Metric Distance Scaling (NMDS) representation of the microbiota evolution across ages using Bray-Curtis distance in female pigs, Figure S4: Silhouette indexes, Calinski-Harabasz (CH) indexes and plots of the clusters of samples based on the genus relative abundance at 52, 99, 119, 140, and 154 days of age, Figure S5: Ratio of FE1 enterotypes at Day 154 in the CC, DC, CD and DD experimental groups corresponding to pigs fed with a control finisher diet, exposed to a DON-contaminated diet between 113 d and 119 d, between 134 d et 140 d, and both between 113 d and 119 d, and 134 d and 140 d of age, respectively, Figure S6: Significant MetaCyc pathway predicted by PICRUST, Table S1: Composition of experimental growing and finishing diets, Table S2: DON challenge effect on female pigs’ fecal microbiota diversity and phyla relative abundance, Table S3: P-values from Kruskal-Wallis tests for differences in genus relative abundance between the enterotypes at post-weaning (PWE1 vs PWE2) and at finishing (FE1 vs FE2), Table S4: Group file, Table S5: PICRUST prediction of Kegg orthologs, Table S6: PICRUST prediction of Metacyc pathway abundance, Table S7: Statistics on the predicted Metacyc abundance predicted by PICRUST.
Le Sciellour, M.; Renaudeau, D.; Zemb, O. Longitudinal Analysis of the Microbiota Composition and Enterotypes of Pigs from Post-Weaning to Finishing. Microorganisms 2019, 7, 622. https://doi.org/10.3390/microorganisms7120622
Le Sciellour M, Renaudeau D, Zemb O. Longitudinal Analysis of the Microbiota Composition and Enterotypes of Pigs from Post-Weaning to Finishing. Microorganisms. 2019; 7(12):622. https://doi.org/10.3390/microorganisms7120622Chicago/Turabian Style
Le Sciellour, Mathilde, David Renaudeau, and Olivier Zemb. 2019. "Longitudinal Analysis of the Microbiota Composition and Enterotypes of Pigs from Post-Weaning to Finishing" Microorganisms 7, no. 12: 622. https://doi.org/10.3390/microorganisms7120622