High Genotypic Diversity, Putative New Types and Intra-Genotype Variants of Bovine Papillomavirus in Northeast Brazil
Abstract
:1. Introduction
2. Results
3. Discussion
4. Materials and Methods
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Sample | Identity | Reference Type | Isolate with the Highest Identity | GenBank Accession Number |
---|---|---|---|---|
BPVUFSBR-19 | 87.8% | BPV26 | BPV26: 87.8% | MG281846 |
BPVUFSBR-20 | 86.06% | BPV26 | BR-UEL2: 86.62% | EU293538 |
BPVUFSBR-28 | 76.39% | BPV3 | BR-UEL6: 95.92% | KP892554 |
BPVUFSBR-30 | 78.36% | BPV26 | BR-UEL2: 85.67% | GQ471901 |
BPVUFSBR-31 | 77.25% | BPV3 | BR-UEL6: 98.42% | KP892554 |
BPVUFSBR-34 | 77.81% | BPV12 | 06AC14: 93.88% | KP701433 |
BPVUFSBR-36 | 79.57% | BPV24 | BR-UEL3: 99.78% | EU293539 |
BPVUFSBR-44 | 78.38% | BPV3 | SW03: 79.21% | KF751802 |
BPVUFSBR-45 | 77.63% | BPV12 | 06AC14: 93.88% | EU293539 |
BPVUFSBR-49 | 74.13% | BPV3 | BR-UEL6: 98.43% | KX924620 |
BPV Type | Mutation | ΔΔG | Structure Stability |
---|---|---|---|
BPV1 | I53N | −1.65 | Reduced |
A55D | −0.02 | Reduced | |
A63K | −2.79 | Reduced | |
R105I | 0.76 | Increased | |
L176P | 0.58 | Increased | |
BPV2 | A134T | −0.93 | Reduced |
L176P | −1.46 | Reduced | |
N178T | 0.05 | Increased | |
BPV11 | K189R | −0.16 | Reduced |
BPV14 | H220P | −1.98 | Reduced |
I223K | −2.6 | Reduced | |
BPV24 | N132G | 0.9 | Increased |
D139E | 0.53 | Increased | |
BPV25 | A168P | −1.37 | Reduced |
BPV26 | A57G | 0.57 | Increased |
P85Q | −0.08 | Reduced | |
Y90N | −2.24 | Reduced | |
P92H | 0.76 | Increased | |
S133G | 0.59 | Increased | |
N144K | 0.82 | Increased | |
C173G | −0.29 | Reduced | |
N190I | 1.7 | Increased |
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Figueirêdo, R.P.; Santos, G.F.; Oliveira, L.B.; Santos, L.A.B.O.; Barreto, D.M.; Cândido, A.L.; Campos, A.C.; Azevedo, E.O.; Batista, M.V.A. High Genotypic Diversity, Putative New Types and Intra-Genotype Variants of Bovine Papillomavirus in Northeast Brazil. Pathogens 2020, 9, 748. https://doi.org/10.3390/pathogens9090748
Figueirêdo RP, Santos GF, Oliveira LB, Santos LABO, Barreto DM, Cândido AL, Campos AC, Azevedo EO, Batista MVA. High Genotypic Diversity, Putative New Types and Intra-Genotype Variants of Bovine Papillomavirus in Northeast Brazil. Pathogens. 2020; 9(9):748. https://doi.org/10.3390/pathogens9090748
Chicago/Turabian StyleFigueirêdo, Rebeca P., Gabriela F. Santos, Luana B. Oliveira, Lucas A. B. O. Santos, Débora M. Barreto, Alexandre L. Cândido, Ana C. Campos, Edisio O. Azevedo, and Marcus V. A. Batista. 2020. "High Genotypic Diversity, Putative New Types and Intra-Genotype Variants of Bovine Papillomavirus in Northeast Brazil" Pathogens 9, no. 9: 748. https://doi.org/10.3390/pathogens9090748