Genes 2011, 2(4), 841-852; https://doi.org/10.3390/genes2040841
Information Management of Genome Enabled Data Streams for Pseudomonas syringae on the Pseudomonas-Plant Interaction (PPI) Website
Department of Plant Pathology and Plant Microbe Biology, 302 Plant Science Building, Cornell University, Ithaca NY 14853, USA
Received: 2 September 2011 / Revised: 12 October 2011 / Accepted: 13 October 2011 / Published: 2 November 2011
(This article belongs to the Special Issue Genes and Genomes of Plant Pathogenic Bacteria)
Abstract
Genome enabled research has led to a large and ever-growing body of data on Pseudomonas syringae genome variation and characteristics, though systematic capture of this information to maximize access by the research community remains a significant challenge. Major P. syringae data streams include genome sequence data, newly identified type III effectors, biological characterization data for type III effectors, and regulatory feature characterization. To maximize data access, the Pseudomonas-Plant Interaction (PPI) website [1] is primarily focused on categorization of type III effectors and curation of effector functional data represented in the Hop database and Pseudomonas-Plant Interaction Resource, respectively. The PPI website further serves as a conduit for incorporation of new genome characterization data into the annotation records at NCBI and other data repositories, and clearinghouse for additional data sets and updates in response to the evolving needs of the research community. View Full-TextKeywords:
Pseudomonas syringae; genome annotation; PPI; type III effector
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Lindeberg, M. Information Management of Genome Enabled Data Streams for Pseudomonas syringae on the Pseudomonas-Plant Interaction (PPI) Website. Genes 2011, 2, 841-852.