Mitochondrial Genomes of the Genus Claassenia (Plecoptera: Perlidae) and Phylogenetic Assignment to Subfamily Perlinae
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Preparation and DNA Extraction
2.2. PCR Amplification and Sequencing
2.3. Mitogenome Assembly and Annotation
2.4. Phylogenetic Analysis
3. Results
3.1. Mitogenome and Base Composition
3.2. Protein-Coding Genes
3.3. Transfer RNA Genes
3.4. Ribosomal RNA Genes
3.5. The Non-Coding Control Region
3.6. Phylogenetic Analyses
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Order | Subfamily | Species | GenBank Accession No. |
---|---|---|---|
Plecoptera | Perlinae | Dinocras cephalotes | KF484757 |
Neoperla sp. FS-2017 | KX091859 | ||
Neoperla ignacsiveci | KX091858 | ||
Neoperlops gressitti | MN400756 | ||
Oyamia nigribasis | MN548290 | ||
Kamimuria wangi | KC894944 | ||
Kamimuria chungnanshana | KT186102 | ||
Kamimuria klapaleki | MN400755 | ||
Paragnetina indentata | MN627431 | ||
Togoperla limbata | MN969990 | ||
Etrocorema hochii | MK905888 | ||
Claassenia sp. YW-2019 | MN419914 | ||
Claassenia magna | OK012602 | ||
Claassenia sp. 2 | OK021652 | ||
Claassenia xucheni | OK021653 | ||
Acroneuriinae | Sniacroneuria dabieshana | MK492253 | |
Acroneuria hainana | KM199685 | ||
Acroneuria carolinensis | MN969989 | ||
Perlesta teaysia | MN627432 | ||
Calineuria stigmatica | MG677941 | ||
Flavoperla sp. YZD-2020 | MK905206 | ||
Flavoperia hatakeyamae | MN821010 | ||
Niponiella limbatella | MK686067 | ||
Caroperia siveci | MG677942 | ||
Leuctrinae | Rhopalopsole bulbifera | MK111419 | |
Nemouroidea | Capnia zijinshana | KX094942 | |
Amphinemurinae | Amphinemura longispina | MH085446 |
Species | Whole Genome | PCGs | tRNAs | rRNAs | Control Region | |||||
---|---|---|---|---|---|---|---|---|---|---|
Size(bp) | A+T (%) | Size (bp) | A+T (%) | Size (bp) | A+T (%) | Size (bp) | A+T (%) | Size (bp) | A+T (%) | |
Claassenia magna | 15,774 | 61.46 | 11,177 | 59.40 | 1493 | 66.98 | 2201 | 64.15 | 832 | 71.51 |
Claassenia sp. 2 | 15,777 | 65.81 | 11,232 | 64.12 | 1492 | 68.70 | 2222 | 69.04 | 869 | 74.45 |
Claasseniaxucheni | 15,746 | 62.89 | 11,139 | 60.62 | 1491 | 67.40 | 2204 | 67.06 | 832 | 73.95 |
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Xiang, Y.; Zhao, M.; Huo, Q.; Du, Y. Mitochondrial Genomes of the Genus Claassenia (Plecoptera: Perlidae) and Phylogenetic Assignment to Subfamily Perlinae. Genes 2021, 12, 1986. https://doi.org/10.3390/genes12121986
Xiang Y, Zhao M, Huo Q, Du Y. Mitochondrial Genomes of the Genus Claassenia (Plecoptera: Perlidae) and Phylogenetic Assignment to Subfamily Perlinae. Genes. 2021; 12(12):1986. https://doi.org/10.3390/genes12121986
Chicago/Turabian StyleXiang, Yanan, Mengyuan Zhao, Qingbo Huo, and Yuzhou Du. 2021. "Mitochondrial Genomes of the Genus Claassenia (Plecoptera: Perlidae) and Phylogenetic Assignment to Subfamily Perlinae" Genes 12, no. 12: 1986. https://doi.org/10.3390/genes12121986