From Phage Display to Yeast Secretion: Developing Fc-Fused Nanobodies Against Influenza Virus
Highlights
- Phage display using H9N2-infected MDCK cells enables isolation of VHHs recognizing native HA and NA, preserving conformational epitopes for accurate functional selection.
- Yeast-expressed VHH-Fc fusions were efficiently secreted at 15–20 mg/L, demonstrating the system’s high-yield production capability.
- This study presents a novel modular format for antiviral antibody development against AIV by fusing camelid VHHs with chicken IgY Fc for the first time.
- VHHs isolated from H9N2-infected cells recognize native HA and NA.
- Selected VHHs target conserved HA stalk/stem and NA active sites.
- Docking predicts key CDR and framework residues contributing binding.
- Yeast-expressed VHH-Fc fusions secreted efficiently at 15–20 mg/L.
- VHH-Fc clones neutralize virus, inhibit NA, and bind multiple HA subtypes.
- Native-targeting VHHs increase likelihood of functional neutralization in vivo.
- Binding conserved HA/NA regions supports potential cross-subtype antiviral activity.
- Framework residues contribute to structural recognition across multiple influenza subtypes.
- Yeast expression enables high-yield, scalable production of functional VHH-Fc antibodies.
Abstract
1. Introduction
2. Materials and Methods
2.1. Cell Lines and Viruses
2.2. Construction of Naïve VHH Phage Display Libraries
2.3. Specific H9N2 VHH Antibodies Screening by Virus-Infected MDCK Cells
2.4. Construction of Recombinant S. cerevisiae Strains Expressing VHH-Fc Antibodies
2.5. Expression, Concentration and Quantification of VHH-Fc Fusion Proteins
2.6. Western Blotting
2.7. Modeling Antibody Crosslinking from Structural Information
2.8. ELISA
2.9. NA Activity Inhibitor Assay
2.10. Viral Neutralization Assay
2.11. Statistics, Replicates, and Software
3. Results
3.1. Construction of Three Camelid Naïve VHH Libraries
3.2. Characterization of VHH-Displaying Phages Against Influenza Virus
3.3. Predicted VHH–Antigen Interactions
3.4. Construction and Expression Characterization of Yeast-Secreted VHH-IgY Fc Fusion Proteins
3.5. In Vitro Functional Validation of VHH-IgY Fc Fusion Proteins
3.5.1. Antigen Binding and Cross-Subtype Recognition
3.5.2. Neuraminidase Activity Inhibition
3.5.3. Anti-H9N2 Virus Neutralization
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| VHH | Variable Domains of Heavy Chain |
| HA | Hemagglutinin |
| NA | Neuraminidase |
| IAV | Influenza A virus |
| MDCK | Madin-Darby Canine Kidney |
| PBMCs | Peripheral Blood Mononuclear Cells |
| CDR3 | Complementarity Determining Region 3 |
| OD450 | Optical density at 450 nm |
| CFU | Colony-Forming Units |
| TCID50 | 50% Tissue Culture Infectious Dose |
| PD50 | 50% Protective Dose |
| IC50 | 50% Inhibitory Concentration |
| ADCC | Antibody-Dependent Cellular Cytotoxicity |
| CDC | Complement-Dependent Cytotoxicity |
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| Primer Name | Sequence (5′→3′) |
|---|---|
| CALL-F | GTCCTGGCTGCTCTWCTACAAGGTGTC |
| CALL-R | GGTACGTGCTGTTGAACTGTTCC |
| VHH-SfiI-F | TCCTTTCTATGCGGCCCAGCAGGTGCAGCTGGTAGAGTC |
| VHH-NotI-R | CGGCACCGGCGCACCTGCTGAGGAGACGGTGACCTGGGT |
| CALL-F | GTCCTGGCTGCTCTWCTACAAGGTGTC |
| CALL-R | GGTACGTGCTGTTGAACTGTTCC |
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Wang, M.; Li, S.; Li, Y.; Xia, X.; Zhang, Y.; Cao, N.; Li, Y.; Liu, Y.; Zhang, S.; Zhang, L.; et al. From Phage Display to Yeast Secretion: Developing Fc-Fused Nanobodies Against Influenza Virus. Cells 2026, 15, 655. https://doi.org/10.3390/cells15080655
Wang M, Li S, Li Y, Xia X, Zhang Y, Cao N, Li Y, Liu Y, Zhang S, Zhang L, et al. From Phage Display to Yeast Secretion: Developing Fc-Fused Nanobodies Against Influenza Virus. Cells. 2026; 15(8):655. https://doi.org/10.3390/cells15080655
Chicago/Turabian StyleWang, Mei, Shujun Li, Yong Li, Xiaomei Xia, Yan Zhang, Ning Cao, Yuanfang Li, Yijia Liu, Sheng Zhang, Lilin Zhang, and et al. 2026. "From Phage Display to Yeast Secretion: Developing Fc-Fused Nanobodies Against Influenza Virus" Cells 15, no. 8: 655. https://doi.org/10.3390/cells15080655
APA StyleWang, M., Li, S., Li, Y., Xia, X., Zhang, Y., Cao, N., Li, Y., Liu, Y., Zhang, S., Zhang, L., & Huang, J. (2026). From Phage Display to Yeast Secretion: Developing Fc-Fused Nanobodies Against Influenza Virus. Cells, 15(8), 655. https://doi.org/10.3390/cells15080655

