Alterations in Immunomodulatory Potential of ADSCs Undergoing Osteogenic Differentiation in the Context of Future Therapeutic Applications
Abstract
1. Introduction
2. Materials and Methods
2.1. Cell Isolation, Cell Culture, and Differentiation
2.2. Proteomic Analysis
2.2.1. Sample Preparation and Proteomics
2.2.2. LC-MS/MS Analysis
2.2.3. Data Analysis
2.3. Transcriptomic Analysis
2.4. Statistical Analysis
2.4.1. ADSC Proliferation
2.4.2. Proteomic Data Statistical Analysis
2.4.3. Transcriptomic Data Statistical Analysis
3. Results
3.1. ADSC Osteogenic Differentiation
3.2. Transcriptomic Analysis of Differentiating ADSCs
3.3. Transcriptome–Proteome Concordance
3.4. Proteomic Analysis of Differentiating ADSCs
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| AAS | Antibiotic-Antimycotic Solution |
| ADREG5/CD97 | Adhesion G Protein-Coupled Receptor E5 |
| ADSC | Adipose-Derived Stem/Stromal Cell |
| AS | Ankylosing Spondylitis |
| B2M | Beta-2-Microglobulin |
| BCA | Bicinchoninic Acid |
| BGN | Biglycan |
| BMP-2 | Bone Morphogenetic Protein 2 |
| BMP-4 | Bone Morphogenetic Protein 4 |
| BMSC | Bone Marrow Mesenchymal Stem/Stromal Cell |
| CAA | Chloroacetic Acid |
| CAT | Catalase |
| CCL2 | C-C Motif Chemokine Ligand 2 |
| CCN2/CTGF | Cellular Communication Network Factor 2 |
| CD63 | CD63 Molecule |
| CD68 | CD68 Molecule |
| CD81 | CD81 Molecule |
| COL3A1 | Collagen Type III Alpha 1 Chain |
| COL6A2 | Collagen Type VI Alpha 2 Chain |
| COL8A1 | Collagen Type VIII Alpha 1 Chain |
| CTSB | Cathepsin B |
| CTSD | Cathepsin D |
| DCN | Decorin |
| DMEM | Dulbecco’s Modified Eagle Medium |
| DPSC | Dental Pulp Stem/Stromal Cells |
| ECM | Extracellular Matrix |
| EV | Extracellular Vesicles |
| FASP | Filter Aided Sample Preparation |
| FBS | Fetal Bovine Serum |
| FDR | False Discovery Rate |
| GLB1 | Galactosidase Beta 1 |
| GvHD | Graft versus Host Disease |
| HLA-A | Major Histocompatibility Complex, Class I, A |
| HLA-B | Major Histocompatibility Complex, Class I, B |
| HLA-C | Major Histocompatibility Complex, Class I, C |
| ICAM1 | Intercellular Adhesion Molecule 1 |
| IL-10 | Interleukine 10 |
| IL-6 | Interleukine 6 |
| LC-MS/MS | Liquid Chromatography-Mass Spectrometry |
| LFQ | Label-Free Quantification |
| LGALS3 | Galectin 3 |
| LTA4H | Leukotriene A4 Hydrolase |
| LTF | Lactotransferrin |
| LUM | Lumican |
| MGP | Matrix Gla Protein |
| MHC I | Major Histocompatibility Complex Class I |
| mRNA | Messenger Ribonucleic Acid |
| MSC | Mesenchymal Stem/Stromal Cell |
| OM | Osteogenic Medium |
| p16INK4a | Cyclin Dependent Kinase Inhibitor 2A; CDKN2A |
| p21WAF1 | Cyclin Dependent Kinase Inhibitor 1A; CDKN1A |
| PBS | Phosphate-Buffered Saline |
| PCA | Principal Component Analysis |
| PTPN11 | Protein Tyrosine Phosphatase Non-Receptor Type 11 |
| RIN | RNA Integrity Number |
| RNA | Ribonucleic Acid |
| SM | Standard Medium |
| SOD | Superoxide Dismutase |
| SOD2 | Superoxide Dismutase 2 |
| STAT2 | Signal Transducer And Activator Of Transcription 2 |
| STAT3 | Signal Transducer And Activator Of Transcription 3 |
| SVF | Stromal-Vascular Fraction |
| TBX3 | T-Box Transcription Factor 3 |
| TCEP | Tris(2-carboxyethyl)phosphine |
| TFA | Trifluoroacetic Acid |
| TGF-beta | Transforming Growth Factor Beta |
| TGFBI | Transforming Growth Factor Beta Induced |
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| Total N | Up-Regulated (N, %) | Down-Regulated (N, %) | |
|---|---|---|---|
| Proteomics (protein groups) | 854 | 499 (58.4%) | 355 (41.6%) |
| Transcriptomics (transcripts) | 444 | 212 (47.7%) | 232 (52.3%) |
| Category | N | % Paired with RNA |
|---|---|---|
| Prot ↑/RNA ↑ | 144 | 32.4% |
| Prot ↓/RNA ↓ | 123 | 27.7% |
| Prot ↑/RNA ↓ | 109 | 24.5% |
| Prot ↓/RNA ↑ | 68 | 15.3% |
| TOTAL Concordant | 267 | 60.1% |
| TOTAL Discordant | 177 | 39.9% |
| Process Name | Protein Name (Gene) | Protein Biological Role | Log2 Fold-Change | Ref. |
|---|---|---|---|---|
| Propensity for Osteogenic Differentiation | CCN2 (Connective Tissue Growth Factor) | CCN2 (CTGF) promotes osteogenic differentiation, enhancing bone matrix proteins, alkaline phosphatase activity, and mineralized nodule formation. | 1.0 | [31] |
| BGN (Biglycan) | Biglycan regulates bone formation, modulates osteoblast differentiation, and matrix mineralization via BMP signaling. | 1.05 | [32] | |
| DCN (Decorin) | Decorin enhances osteogenic differentiation via activation of ERK1/2 signaling, facilitating osteoblast maturation. | 3.09 | [33] | |
| LUM (Lumican) | Lumican stimulates osteoblast differentiation and suppresses bone resorption, enhancing bone formation. | 1.2 | [34] | |
| MGP (Matrix Gla Protein) | MGP positively influences bone formation by promoting osteoblastic cell proliferation, differentiation, and mineralization via the Wnt/β-catenin pathway and Runx2. | 1.76 | [35] | |
| Immunomodulation/Immune/Inflammatory Response | LTA4H (Leukotriene A4 hydrolase) | LTA4H catalyzes leukotriene B4 synthesis, amplifying inflammation and recruiting neutrophils and leukocytes. | 0.468 | [36] |
| LTF (Lactoferrin) | Lactoferrin is an immunomodulator that limits infections and inflammation by controlling cytokine production and ROS. | 1.95 | [37] | |
| CD68 (Macrosialin) | CD68, expressed by macrophages, is a marker of activated phagocytes, indicating chronic inflammation and immune activation. | 1.16 | [38] | |
| ADGRE5 (CD97) | CD97 facilitates leukocyte adhesion and migration, supporting granulocyte homeostasis and antibacterial immune responses. | 0.868 | [39] | |
| MHC I: HLA-A HLA-C | Presentation of endogenous proteins to Tc lymphocytes, regulation of cytotoxic functions of NK cells. mesenchymal stem cells transfer mitochondria to allogeneic Tregs in an HLA-dependent manner, improving their immunosuppressive activity. | 0.775 1.05 | [40,41,42,43] | |
| Cell senescence | GLB1 (Galactosidase-β 1, lysosomal) | GLB1 encodes lysosomal β-galactosidase, a marker of senescent cells correlated with increased p16INK4a and reduced proliferation. | 0.841 | [44] |
| Cell Cycle Regulation | TBX3 (T-box 3 transcription factor) | TBX3 represses p21WAF1, preventing cell cycle arrest and supporting proliferation, bypassing senescence checkpoints. | 1.89 | [45] |
| Protein | Trends | Log2 Fold-Change | ADSC Immunomodulatory/Therapeutic Potential | Reference |
|---|---|---|---|---|
| STAT3 | Prot up | 0.97 | Immunomodulatory | [46] |
| Transcript down | −1.01 | Anti-inflammatory | [47] | |
| GvHD mitigation | [48] | |||
| HLA-A | Prot up | 0.78 | GvHD mitigation | [42] |
| Transcript up | 0.93, NS | |||
| HLA-C | Prot up | 1.05 | GvHD mitigation | [41,42,43] |
| Transcript ND | ND | |||
| ICAM1 | Prot up | 1.46 | Immunomodulation | [13,49,50,51] |
| Transcript NS | 0.49, NS | Transplant rejection | [51] | |
| LTA4H | Prot up | 0.47 | Proinflammatory | [52,53] |
| Transcript down | −1.10 | Anti-inflammatory | [54,55] | |
| LTF | Prot up | 1.95 | Immunomodulation | [56] |
| Transcript NS | 0.99, NS | Anti-inflammatory | [57] | |
| CAT | Prot up | 0.68 | Anti-inflammatory | [58] |
| Transcript NS | −1.21, NS | |||
| SOD2 | Prot up | 2.86 | Anti-inflammatory | [59] |
| Transcript down | −1.61 | |||
| CTSB | Prot up | 1.33 | Tissue remodeling | [60] |
| Transcript up | 1.39 | |||
| CTSD | Prot up | 1.04 | Tissue remodeling | [61] |
| Transcript up | 2.37 | |||
| PTPN11 | Prot up | 0.56 | Immunomodulatory | [62] |
| Transcript down | −1.04 | |||
| LGALS3 | Prot up | 1.22 | Immunomodulatory | [63] |
| Transcript up | 1.19 | |||
| CD68 | Prot up | 1.16 | Immunomodulatory | [38] |
| Transcript up | 2.54 |
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Szabłowska-Gadomska, I.; Rudziński, S.; Mroczko, A.; Mrozikiewicz-Rakowska, B.; Cysewski, D.; Gasperowicz, P.; Bocian, K. Alterations in Immunomodulatory Potential of ADSCs Undergoing Osteogenic Differentiation in the Context of Future Therapeutic Applications. Cells 2026, 15, 614. https://doi.org/10.3390/cells15070614
Szabłowska-Gadomska I, Rudziński S, Mroczko A, Mrozikiewicz-Rakowska B, Cysewski D, Gasperowicz P, Bocian K. Alterations in Immunomodulatory Potential of ADSCs Undergoing Osteogenic Differentiation in the Context of Future Therapeutic Applications. Cells. 2026; 15(7):614. https://doi.org/10.3390/cells15070614
Chicago/Turabian StyleSzabłowska-Gadomska, Ilona, Stefan Rudziński, Agnieszka Mroczko, Beata Mrozikiewicz-Rakowska, Dominik Cysewski, Piotr Gasperowicz, and Katarzyna Bocian. 2026. "Alterations in Immunomodulatory Potential of ADSCs Undergoing Osteogenic Differentiation in the Context of Future Therapeutic Applications" Cells 15, no. 7: 614. https://doi.org/10.3390/cells15070614
APA StyleSzabłowska-Gadomska, I., Rudziński, S., Mroczko, A., Mrozikiewicz-Rakowska, B., Cysewski, D., Gasperowicz, P., & Bocian, K. (2026). Alterations in Immunomodulatory Potential of ADSCs Undergoing Osteogenic Differentiation in the Context of Future Therapeutic Applications. Cells, 15(7), 614. https://doi.org/10.3390/cells15070614

