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Review

The Regulatory Functions and the Mechanisms of Long Non-Coding RNAs in Cervical Cancer

by
Qiwei Yang
* and
Ayman Al-Hendy
Department of Obstetrics and Gynecology, University of Chicago, Chicago, IL 60637, USA
*
Author to whom correspondence should be addressed.
Cells 2022, 11(7), 1149; https://doi.org/10.3390/cells11071149
Submission received: 8 March 2022 / Revised: 25 March 2022 / Accepted: 27 March 2022 / Published: 29 March 2022
(This article belongs to the Special Issue Regulatory Roles of Non-coding RNAs in Cancer)
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Abstract

:
Cervical cancer is one of the leading causes of death in gynecology cancer worldwide. High-risk human papillomaviruses (HPVs) are the major etiological agents for cervical cancer. Still, other factors also contribute to cervical cancer development because these cancers commonly arise decades after initial exposure to HPV. So far, the molecular mechanisms underlying the pathogenesis of cervical cancer are still quite limited, and a knowledge gap needs to be filled to help develop novel strategies that will ultimately facilitate the development of therapies and improve cervical cancer patient outcomes. Long non-coding RNAs (lncRNAs) have been increasingly shown to be involved in gene regulation, and the relevant role of lncRNAs in cervical cancer has recently been investigated. In this review, we summarize the recent progress in ascertaining the biological functions of lncRNAs in cervical cancer from the perspective of cervical cancer proliferation, invasion, and metastasis. In addition, we provide the current state of knowledge by discussing the molecular mechanisms underlying the regulation and emerging role of lncRNAs in the pathogenesis of cervical cancer. Comprehensive and deeper insights into lncRNA-mediated alterations and interactions in cellular events will help develop novel strategies to treat patients with cervical cancer.

1. Introduction

Cervical cancer is a malignant neoplasm that arises from the uterine cervix cells. The cervix is made of two parts and is covered with two different types of cells. The endocervix is the part closer to the uterus and is made up of glandular cells, and the exocervix is the part next to the vagina, made up of squamous cells. The region where these two cell types converge, the transformation zone, is the region where most cervical cancers originate. Based on their origins, cervical cancers can be classified as squamous cell carcinomas, arising from the exocervical squamous cells and corresponding to about 80% of cervical cancer cases, adenocarcinomas, arising from the glandular cells of the endocervix and contributing to about 10–20% of cases, and adenosquamous carcinomas, wherein cancer possesses the features of both of the aforementioned cell types and is reported in a rare proportion of cases [1,2,3].
With an incidence of more than 600,000 and mortality of over 340,000 in 2020 [4], cervical cancer currently ranks as the fourth most common cancer worldwide, in both incidence and mortality. Despite the progress in diagnosis and therapeutic strategies, cervical cancer remains a leading cause of cancer deaths [5]. Human papillomavirus (HPV) is considered the major contributor to cervical carcinoma. Two oncogenic viral proteins, E6 and E7, can orchestrate diverse molecular mechanisms that may result in malignant cervical cancer progression. E6- and E7-induced altered transcriptional regulation resulted in genomic instability and distinguished the process of cell transformation from a productive viral infection and provided subsequent important steps towards malignancy [6]. For example, the constitutive expression of E6/E7 immortalizes primary epithelial cells and promotes tumor formation in vivo. E7 interacts with and stabilizes the retinoblastoma tumor suppressor family (RB1 and RB2), facilitating cell cycle transition from G1 to S phase. Similar to cell growth dysregulation, E6 interacting with ubiquitin ligase E6AP promotes tumor suppressor P53 degradation and cell proliferation [7,8]. In addition, other risk factors, including smoking, a weakened immune system, and chlamydia infection, also contribute to cervical cancer progression and carcinogenesis. To date, surgery (hysterectomy and trachelectomy), radiation therapy (external beam radiation and brachytherapy), and chemotherapy (cisplatin, cisplatin plus 5-fluorouracil (5-FU), carboplatin, paclitaxel, and topotecan) are the three main options for treatment of cervical cancer [5,9]. However, these clinical applications often have serious toxicity and side effects leading to their abrogation, resulting in the development of resistance by cancer cells. Moreover, about 80% of cervical cancer cases are reported at advanced stages, contributing to the poor prognosis and high mortality rates. Therefore, novel targeted therapeutic strategies are urgently needed to improve clinical outcomes.

2. Long Non-Coding RNAs and Potential Therapeutic Targeting in Cancer

Non-coding RNA (ncRNA) is commonly employed by RNA that does not encode a protein. These ncRNAs include microRNA, snoRNAs, other small regulatory RNAs, and lncRNAs [10,11,12]. The latter is a class of ncRNAs typically longer than 200 nucleotides. LncRNAs are mainly transcribed by RNA polymerase II, typically by a 5′7-methylguanosine cap and a 3′ poly (A) tail. Similar to messenger RNAs, they are involved in the pathogenesis of cancer [11,13,14,15,16,17,18]. Different classes of lncRNAs are generated from introns, exons, intergenic regions, telomerases, enhancers, or promoters [19]. Of the approximately 60,000 lncRNAs identified in human tumor tissues and cancer cell lines, the role and regulatory mechanisms of the majority of lncRNAs are still largely unknown. Nonetheless, the functional roles of numerous lncRNAs, whose expression is often dysregulated in various cancers, have been investigated. Accumulated studies have demonstrated that lncRNAs can regulate gene expression networks via the control of chromatin architecture and transcription in the nucleus, as well as via the modulation of mRNA stability, together with translation and post-translational modifications in the cytoplasm [20,21]. Furthermore, their functions and mechanisms are related to their genomic and intracellular localization. lncRNAs display functional similarity to typical protein-coding oncogenes and tumor suppressors involved in tumor initiation, progression, and metastasis. For example, HOX antisense intergenic RNA (HOTAIR) is one of the most well-studied oncogenic lncRNAs involved in the carcinogenesis of several types of cancer. An elevated HOTAIR expression is associated with resistance to chemotherapeutics, suggesting that inhibitors of HOTAIR could potentially resensitize a patient’s tumor to a specific chemotherapy [19,22,23,24]. One of the first-identified lncRNAs, H19, acts as a decoy for several tumor-suppressor miRNAs [25]. MEG3 lncRNA may serve as a tumor suppressor, and its downregulation has been associated with the development of a variety of human cancers [26].
LncRNAs are involved in a wide range of biological processes, including immune responses, a variety of disorders such as neuronal disorders, and cellular fate programs in cancer stem cells [27]. The latter plays a vital role in the origin and progression of malignancy and therapy resistance [28,29,30,31]. The regulatory network of lncRNAs includes EMT, drug resistance, and others via multiple mechanisms. LncRNAs have been shown to act as competing endogenous RNAs (ceRNAs) for specific microRNAs, thus regulating the expression of their downstream target genes [28]. LncRNAs promote cancer stem cells stemness and drug resistance [32]. In addition, lncRNAs regulate cell reprogramming, altering the transcriptome [33].
Detection of lncRNAs in body fluids (i.e., blood, saliva, urine, etc.) was also considered as a potential biomarker for the diagnosis, prognosis, and monitoring of the disease progression, as they acted as novel and potential drug targets for therapeutic options in carcinogenesis [34]. Furthermore, using body fluids to detect circulating lncRNAs is much less invasive when compared to collecting biopsies.

3. LncRNAs-Regulated Pathways in Cervical Cancer

Aberrant expression of lncRNAs has been previously and extensively reported in cervical cancer [35]. However, current studies (since March 2021) provide more progress about the importance of lncRNA dysregulation in promoting cervical cancer development, invasion, and metastasis through their interactions with several signaling pathways.

3.1. The Wnt Signaling Pathway

The Wnt signaling pathway is involved in various cellular processes such as embryogenesis, tissue renewal, cell proliferation, differentiation, and tumorigenesis. In canonical Wnt on signaling, Wnt binds to and activates the seven-pass transmembrane Frizzled (Fzd) receptor and the activated Fzd receptor recruits Dishevelled (Dvl) protein and AXIN. This blocks the formation of an AXIN-APC (adenomatous polyposis coli) complex and inhibits GSK3β. As a result, β-catenin avoids destruction in the cytoplasm and translocates into the nucleus. Subsequently, the nuclear β-catenin binds to the TCF/LEF transcription factors and triggers a β-catenin-regulated gene expression. In canonical Wnt off signaling, a combination of AXIN and APC allows GSK3β to phosphorylate β-catenin and targets it for proteasomal degradation [36].
Accumulated evidence demonstrates that LncRNAs play an essential role in the development and progression of a variety of cancers via the Wnt signaling pathway. For example, in cervical cancer, several lncRNAs, including RP11-480112.5, ASB16-AS1, HOTAIR, CASC11, CALML3-AS1, and DANCER, are involved in modulating Wnt Signaling pathways [35]. More recently, several additional lncRNAs, including SNHG6 [37], EGFR-AS1 [38], SPINT1-AS1 [39], HNRNPU-AS1 [40], and LINC00665 [41] have been identified that contribute to the proliferation, migration, invasion, and EMT in cervical cancer via the Wnt signaling pathway (Table 1, Figure 1).

3.2. The Mitogen-Activated Protein Kinase (MAPK) Pathway

The MAPK pathway plays a pivotal role in many cellular events, including cell migration, growth, apoptosis, and differentiation. The central components of this signaling pathway are ERK1/2, c-JNK N-terminal kinase, p38 MAPK, and ERK5, and after cascade phosphorylation, they are transmitted to the nucleus and regulate the expression of downstream targets [42]. Among them, JNK and p38 MAPK are activated by chemical, physical, and biological stimuli, while ERK1/2 are activated by cell growth factors. Tyrosine kinase receptors are the main receptors involved in the regulation of the MAPK signaling pathway. After receptor activation, RAS recruits RAF to phosphorylate MAPK, which subsequently activates ERK1/2. ERK1/2 in the nucleus activates several transcription factors such as MNK1, Elk-1, and c-Ets1. The MAPK pathway is upregulated in a variety of cancers. MAPK affects the secretion of extra growth factors and cytokines, leading to EMT progression.
Several lncRNAs are involved in the MAPK pathway contributing to cervical cancer progression. For example, over-expression of lncRNA CASC2 inhibits cell proliferation and migration by negatively regulating the MAPK pathway. In addition, TDRG1 activates MAPK1 by sponging miR-326, and TUG1 regulates cervical cancer sensitivity to cisplatin via the MAPK pathway. More recently, a study [43] showed that LOXL1-AS1 bound to miR-423-5p, and miR-423-5p targeted ENC1, which served as a regulator of the transcription factor Nrf2 played a key role in malignant transformation. A further study demonstrated that ENC1 knockdown decreased the protein levels of p-p38, p-MEK1/2, and p-ERK1/2, inhibiting the activation of the ERK/MEK pathway and reducing cell proliferation, suggesting that the LOXL1-AS1/miR-423-5p/ENC1 axis accelerates cervical cancer development through the MEK/ERK pathway. In addition, lncRNA LINC00997 was shown to activate the MAPK pathway-associated protein CUL2 by interacting with miR574-3p, demonstrating that the LINC00997/miR-574-3p/CUL2 axis contributes to proliferation, migration, invasion, and autophagy by activation of MAPK signaling in cervical cancer [44].

3.3. The TGF-β Signaling Pathway

TGF-β directs association with receptors on the plasma membrane, initiating the cascade of signal transduction that elicits biological actions on responding cells. The central mechanism of signal transduction by the TGF-β family receptors follows a well-characterized process of interactions and receptor-mediated phosphorylation. During the first step of TGF-β signaling, the TGF-β ligand binds to a heteromeric complex of type II and type I receptors. Upon ligand binding, the type II receptor phosphorylates and activates the type I receptor. The activated type I receptor, in turn, phosphorylates and activates the receptor-activated SMADs (R-SMADs), SMAD2, and SMAD3. SMAD7 competes with R-SMADs for interacting with type I receptors, thus preventing R-SMAD activation and proper propagation of the signaling. Activated R-SMADs dissociate from the type I receptors to form a complex with the common mediator SMAD4. Then, the trimeric complex (SMAD2, 3, 4) translocates into the nucleus, where it associates with high-affinity DNA binding transcription factors and chromatin remodeling proteins, therefore positively or negatively regulating the transcription of the TGF-β-responsive genes [45].
LncRNAs have been shown to be associated with the TGF-β pathway in various cancers [46]. Several studies have demonstrated that lncRNAs regulate TGF-β signaling, promoting cervical cancer progression. LncRNA DANCR regulates miR-665, which targets TGFBR1 through the ERK/SMAD pathway [47]. CDKN2B-AS1 is upregulated in cervical cancer tissues and cell lines and directly interacts with miR-181a-5p. TGF-β1 is a target of miR-181a-5p, suggesting that the CDKN2B-AS1/miR-181a-5p/TGF-β1 axis might play a vital role in cervical cancer development. LncRNA NEF suppresses HPV-negative cervical squamous cell carcinoma’s migration and invasion by inhibiting the TGF-β pathway. lncRNA loc285194 expression was downregulated in tissue samples and plasma from cervical squamous cell carcinoma patients. Plasma levels of loc285194 and TGF-ß1 significantly correlated with the presence of cervical squamous cell carcinoma. Moreover, lncRNA loc285194 overexpression downregulated TGF-β expression and resulted in a decrease in the cell migration of cervical cancer cells [48] (Figure 1).

3.4. The Hippo Signaling Pathway

The hippo signaling pathway is highly conserved and plays a critical role in tumorigenesis. It is characterized by phosphorylation of YAP1 and TAZ. Several factors can regulate the localization of YAP, which controls cell proliferation and apoptosis. Upon activation, MST1/2 kinase is phosphorylated and forms a complex with SAV1 to phosphorylate LATS1/2, which in turn phosphorylates the transcriptional co-activator YAP. The phosphorated YAP binds to the 14-3-3 proteins and is retained in the cytoplasm or is degraded by the ubiquitin-proteasome pathway [49]. In the absence of an active Hippo signaling pathway, unphosphorylated Yap and Taz enter the nucleus, interact with the transcription factors, and stimulate the expression of genes involved in proliferation and anti-apoptotic processes. In addition, the Hippo pathway also plays a critical role in stem cell and tissue-specific progenitor cell self-renewal and expansion.
Accumulated evidence demonstrates that lncRNAs can promote the oncogenic signaling of YAP in a variety of cancers [50,51,52,53,54]. In cervical cancer, several studies showed that lncRNAs regulated the Hippo pathway contributing to the progression of cancer. The expression of lncRNA NOC2L-4.1 was upregulated in cervical cancer, and the downregulation of NOC2L-4.1 suppressed cell migration and proliferation. Further studies revealed the critical role of the NOC2L-4.1/miR-630/YAP regulatory network in promoting cervical cancer progression [55]. Another LncRNA, SNHG3, is involved in the occurrence and development of various cancers. In cervical cancer, SNHG3 promotes the proliferation, migration, and invasion of cervical cancer cells in vitro, and facilitates cervical cancer growth in vivo. Notably, SHHG3 interacted with YAP1, thus inhibiting its degradation, concomitantly with altered expression of several YAP1 target genes [56] (Figure 1).

3.5. DNA Damage Repair (DDR) and Genomic Integrity

The DNA damage response (DDR) pathway is a complex regulatory network responsible for identifying disruptions in DNA structure, integrity, and stability. DDR is an evolutionarily conserved process that maintains genomic integrity but is frequently dysregulated in cancer. Damaged DNA bases and DNA single-strand breaks are the most abundant types of DNA damage. Although DNA double-strand breaks are less common, they are considered the most deleterious types of DNA damage [57]. Although this system normally protects healthy cells from tumorigenic DNA damage and replication errors, most cancer cells acquire some form of enhanced DDR that eventually results in radiotherapeutic or chemotherapeutic resistance. The function and capacity of DDR machinery are essential to ensure the maintenance of normal cycling cells and prevent the accumulation of mutations that increase the potential for malignancy. Recently, several studies demonstrated that DDR is associated with the dysregulation of lncRNAs that are implicated in cancer progression [58]. lncRNA LINP1 was upregulated in cervical cancers compared to adjacent tissues. LINP is associated with the non-homologous end joining (NHEJ) pathway proteins Ku80 and DNA-PKcs in cervical cancer cell lines by RNA pull-down assay. Knockdown of LINP1 increased irradiation-induced cell apoptosis and delayed the repair of DNA double-strand breaks [59]. Another lncRNA, LINC02535, cooperated with PCBP2 and regulated RRM1 mRNA stability to accelerate cell proliferation and EMT by facilitating the repair of DNA damage in cervical cancer cells [60].

3.6. The Phosphatidylinositol 3- kinase/Protein Kinase B (PI3K/AKT) Pathway

PI3K is a member of the lipid kinases family. In the normal state of the cell, various extracellular factors, such as hormones, growth factors, and cytokines, send signals to activate PI3K through an interaction with a phosphorylated tyrosine receptor. A PI3K downstream cascade generates signals received by its targets, the most important one being the protein kinase B (AKT) that dominates the signal transduction of the PI3K pathway [61]. Activation of AKT is a common phenomenon in human cancers, leading to the promotion of cell proliferation [62]. The entire PI3K/AKT signaling pathway regulates the cell physiology and pathology, including apoptosis, cell proliferation, invasion, and metastasis [62,63,64]. This pathway is abnormally activated in different tumors, including cervical cancer [65,66].
Several lncRNAs regulate the PI3K/AKT pathways in cervical cancer. Decreased expression of lncRNA ANRIL suppressed cell proliferation, migration, and invasion when the PI3K/AKT pathway was inactivated, suggesting that ANRIL inhibits cervical cancer progression via the PI3K/AKT pathway. In addition, downregulating RP1-93H18.6 decreased cell proliferation and EMT, while promoting apoptosis by blocking the PI3K/AKT/mTOR signaling pathway [35].
More recently, several additional lncRNAs were found to be involved in cervical cancer progression via the PI3K pathway. Knockdown of lncRNA KCNQ1OT1 caused apoptosis by sponging miR-1270, thereby altering the expression of LOXL2. Moreover, decreased expression of KCNQ1OT1 reduced the p-AKT levels in cervical cancer cells [67]. LncRNA HOTAIR triggered the migration and proliferation of cervical cancer cells and promoted chemoresistance by facilitating EMT via the miR-29b/PTEN/PI3K axis [67]. LINC00861 functions as a ceRNA for miR-513b-5p to inhibit the progression of cervical cancer cells and modulate the PTN/AKT/mTOR signaling pathway [68]. Similarly, lncRNA LINC00673 exerts oncogenic function in cervical cancer through the PTEN/AKT pathway [69].

3.7. The Hypoxia Signaling Pathway

Hypoxia is an environmental stressor instigated by low oxygen availability and is one of the major factors that contribute to cancer progression and the acquisition of chemotherapeutic resistance in many ways. Hypoxia-inducible factors-1 and -2 alpha (HIF-1α and EPAS1/HIF-2α) function as master regulators of the adaptive response to hypoxia. HIF-induced genes promote characteristic tumor behaviors, including angiogenesis and metabolic reprogramming. Therefore, targeting the signaling pathways associated with hypoxia is deemed attractive for achieving tumor suppression, as well as for mitigating immunosuppression and improving therapeutic outcomes [70].
Accumulating evidence shows that lncRNAs are modulated by hypoxia during oncogenesis [71]. Several studies have demonstrated that lncRNAs are involved in the hypoxia pathway regulation in cervical cancer. SNHG15 is upregulated in cervical cancer tissues and promotes cervical cancer progression via the miR-4735-3p/HIF1a axis [72]. The expression of LncRNA OIP5-AS1 is increased in cervical cancer and correlates with unfavorable outcomes. For example, OIP5-AS1 expression in cervical cancer tissues is significantly related to tumor size, differentiation, lymph node metastasis, and FIGO stages of cervical cancer. In addition, the high levels of OIP5-AS1 correlate with poor 5-year overall survival. OIP5-AS1 is also a hypoxia-responsive lncRNA and is essential for hypoxia-enhanced glycolysis, which is dependent on IDH2 or hypoxia-inducible factor-1α (HIF-1α) [73]. TDRG1 promotes hypoxia-induced glycolysis via the miR-214-5p/SEMA4C axis in cervical cancer cells [74]. LncRNA ANCR downregulates hypoxia-inducible 1 alpha and suppresses the growth of HPV-negative cervical squamous carcinoma cells under hypoxic conditions [75].

3.8. The p53 Pathway

p53 is a nuclear transcription factor and transactivates numerous target genes involved in cell cycle arrest and apoptosis [76]. Under normal conditions, p53 is expressed at an extremely low level and is caused by proteasomal degradation mediated largely by the RING-finger type E3 ubiquitin protein ligase, MDM2, in a functionally latent form. Upon DNA damage, p53 accumulates in the cell nucleus through post-translational modifications such as phosphorylation and acetylation. These chemical modifications convert p53 from a latent to an active form, which might be due to the dissociation of MDM2 from p53. The activation of the p53 protein as a transcription factor initiates several cellular events, including a program of cell cycle arrest, cellular senescence, or apoptosis. The transcriptional network of p53-responsive genes produces proteins that interact with many other signal transduction pathways in the cell, and a number of positive and negative autoregulatory feedback loops act upon the p53 response [77].
The link between lncRNAs and the p53 pathway has been investigated in several types of cancer [78,79,80,81,82,83,84]. Notably, p53-related lncRNAs in cervical cancer have also been reported. For example, lncRNA RPL34-AS1 induces RPL34, therefore inhibiting cervical cancer cell proliferation, invasion, and metastasis through modulation of the MDM2-P53 signaling pathway [85]. LncRNA DINO is a p53 transcriptional target that has been reported to bind to and stabilize p53, thereby amplifying p53 signaling. In cervical cancer, DINO is downregulated, and upregulation of DINO causes p53 reactivation in HPV-positive cervical cancer cells [86]. lncRNA WT1-AS suppresses cell proliferation, migration, and invasion via the miR-330-5p/p53 axis in cervical cancer [87]. In addition to lncRNAs that regulate p53, a number of p53-induced lncRNAs, including PINCR, PINT, PURPL, LincRNA-p21, TUG1, NEAT, and DINO, among others, have been identified and reported in several diseases [84,88,89,90,91,92,93,94,95,96]. These p53-induced lncRNAs play a critical role in multiple cellular processes, including cell proliferation and apoptosis. Moreover, reciprocal modulation of lncRNAs and p53 has been shown to regulate tumorigenesis [91]. Importantly, p53 is wild-type or non-mutated in most cervical cancer patients. Therefore, the identification of p53-induced lncRNAs in cervical cancer will help better understand the role and regulatory mechanism of the p53 pathway in cervical cancer.

3.9. Other lncRNA-Related Targets in Cervical Cancer

The high-throughput approach has been used to determine the differentially expressed lncRNAs in cervical cancer extensively and has identified over 3000 differentially expressed lncRNAs, including sense, antisense, intronic, intergenic, and bidirectional lncRNAs, in cervical cancer tissues compared with adjacent non-cancerous tissues. These lncRNAs with different expression patterns may play important roles in the development and progression of cervical cancer [97]. Another experiment was performed using a high-throughput RNA sequencing approach and identified 19 differentially expressed lncRNAs in HPV16-mediated cervical squamous cell carcinoma and matched adjacent non-tumor tissues. Among them, 11 lncRNAs participated in at least one pathway related to cancer, and some lncRNAs may also be involved in the immune system, signal transduction, and cellular community [98]. lnc_000231, as one of the 19 identified differentially expressed lncRNAs, was further investigated, and it was demonstrated that HPV oncoprotein E6 increased lnc_000231 expression by triggering H3K4me3 modification in the lnc_000231 promoter region by destabilizing histone demethylase KDM5C. Furthermore, a functional analysis demonstrated that lnc_000231 promoted cervical cell proliferation and tumor formation. Notably, a series of studies, including ChIP-PCR, site-directed mutation, knockdown, and promoter activity experiments, revealed the close link between lnc_000231 and miR-497-5p [7].
LncRNAs can indirectly regulate RNA expression by sequestering miRNAs and acting as ceRNAs or as sponges [99], therefore lncRNAs decrease miRNAs regulatory effect on mRNAs and introduce an additional layer of complexity in the miRNA-related network. Recently, lncRNA-miRNA interactions have been investigated in cervical cancer (Table 1). For example, LncRNA MAGI2-AS3 suppresses the proliferation and invasion of cervical cancer cells by regulating the miR-15b/CCNE1 axis. LncRNA ZFAS1 (Zinc finger antisense 1) impacts cervical cancer growth through miR-190a-3p. KLF6 is negatively regulated by MiR-190a-3p, but positively regulated by ZFAS1. Inhibition of ZFAS1 reduces cervical cancer tumor growth and the expression levels of KLF6 but increases the expression levels of miR-190a-3p. Therefore, ZFAS1 could regulate cervical cancer pathogenesis by regulating the miR-190a-3p/KLF6 axis [100]. LncRNA 885 (LINC00885) exerts oncogenic function in cervical cancer by regulating the miR-3150b-3p/BAZ2A axis [101]. Several lncRNAs are involved in cell proliferation, apoptosis, and cell cycle correlating to abnormal cell proliferation of cervical cancer cells. For example, OTUD6B-AS1 targets cyclinD2 via miR-206. LINC00313 alters CDK6 via sponging miR-4677-3p. FOXD2-AS1 promotes cervical cancer progression by decreasing the p21 transcription [102] (Table 1). In addition, one lncRNA can interact with many miRNAs via the sponge mechanism and therefore target multiple mRNAs and signalings in cervical cancer. For example, HOTAIR interacted with miR-29b, miR-203, and miR-214-3p, and targeted PI3K and Wnt pathways in cervical cancer (Table 1). FEZF1-AS interacted with miR-1254 and miR-367-3p involved in the proliferation, migration, and invasion of cervical cancer (Table 1). NEAT1 sponged miR-377 and miR-34a, and targeted FGFR1 and LDHA, respectively. KCNQ1OT1 interacted with MiR-1270 and miR-296-5p and altered the expression of LOXL2 and HYOU1, respectively (Table 1). Identified lncRNAs that interacted with miRNAs in cervical cancer are summarized in Table 1.
Table
Table 1. Role and mechanisms of lncRNAs in cervical cancer (Papers published Since March 2021).
Table 1. Role and mechanisms of lncRNAs in cervical cancer (Papers published Since March 2021).
LncRNABiological SamplesInteraction with RNATargets/PathwayBiological ProcessesPublication TimeRef.
AC010198.2CellsmiR-34b-3pSTC2Drug resistanceOct. 2021[103]
AFAP1-AS1CellsmiR-27b-3pVEGF-CstemnessJuly 2021[104]
AL592284.1Cells and tissuesmiR-30a-5pVimentin/EMTproliferation, metastasisNov. 2021[105]
ALOX12-AS1TissuesmiR-3171NAproliferationJan. 2022[106]
ANXA2P2Cells and tissuesmiR-361-3pSOX9cisplatin-resistantJan. 2022[107]
CASC9-1CellsmiR-383-5pMAPKAP1proliferation, migration, invasion, apoptosisNov. 2021[108]
CCAT2Cells and tissuesmiR-493-5pCREB1proliferation, EMT, tumor growthDec. 2021[109]
DANCRCells and tissuesmiR-145-3pZEB1tumor growth, metastasisJuly 2021[110]
DARS-AS1Cells and tissuesNAATP1B2, cGMP-PKGproliferation, invasion, migrationJune 2021[111]
DLEU2CellsNAZFP36, p53, notch signaling, p53proliferation, cell cycleMay 2021[112]
DUXAP8CellsmiR-1297RCN2malignancy, tumor growthNov. 2021[113]
EGFR-AS1CellsmiR-2355-5pACTN4-mediated Wntproliferation, migration, invasion, apoptosisJan. 2022[38]
FBX19-AS1CellsmiR-193a-5pCOL1A1proliferation, migration, invasion, EMT, apoptosis, metastasisAug. 2021[114]
FEZF1-AS1Cells and tissuesmiR-1254NAproliferation, migration, invasionJuly 2021[115]
FEZF1-AS1CellsmiR-367-3pSLS12ASproliferation, migration, invasion, apoptosisJan. 2022[115]
FGD5-AS1 CellsmiR-129-5pBST2macrophage M1 polarizationOct. 2021[116]
FOXD2-AS1Cells and tissuesNAMETTL3, LSD1/p21proliferation, migration, tumor growthJuly 2021[102]
FOXD3-AS1Cells and tissuesmiR-128-3pLIMK1proliferation, migration, invasionMay 2021[117]
HAND2-AS1TissuesmiR-21-5pTIMP3/VEGFAproliferation, migration, invasion, apoptosis, tumor growthJune 2021[118]
HNRNPU-AS1Cells and tissuesmiR-205-5pAXIN2, Wntproliferation, apoptosis, tumor growthSep. 2021[40]
HOTAIRCells and tissuesNAWntdrug resistanceOct. 2021[119]
HOTAIRCellsmiR-29bPTEN/PI3Kproliferation, drug resistance, EMTSep. 2021[120]
HOTAIRStem cellsmiR-203ZEB1EMTSep. 2021[121]
HOTAIRCellsmiR-214-3pNAproliferation, apoptosisJuly 2021[122]
HOTAIR
HOXA-AS2		Cells and tissuesmiR-509-3pBTN3A1proliferation, migration, invasion, tumor growthSep. 2021[123]
HOXC13-ASCells, and tissuesNAFTO, Wnt, FZDproliferation, invasion, EMTJuly 2021[124]
HOXC-AS3Cells and tissuesmiR-105-5pSOS1proliferation, migration, invasion, apoptosisOct. 2021[125]
HOXD-AS1CellsNAFRRS1proliferation, apoptosis, tumor growth Jan. 2022[126]
ILF3-AS1Cells and tissuesmiR-454-3pPTENsurvival rate, migration, apoptosis, EMTAug. 2021[127]
KCNQ1OT1CellsmiR-1270LOXL2, PI3K/Aktviability, apoptosisFeb. 2022[67]
KCNQ1OT1Cells and tissuesmiR-296-5pHYOU1proliferation, migration, invasion, tumor growthDec. 2021[128]
LIN01006Cells and tissuesmiR-28-5pPAK2proliferation, migration, invasion, tumor growthApril 2021[129]
LINC00313Cells and tissuesmiR-4677-3pCDK6migration, EMTMar. 2021[130]
LINC00514Cells and tissuesmiR-708-5pHOXB3Proliferation, invasionJan. 2022[131]
LINC00662CellsmiR-103aPDK4proliferation, apoptosisJune 2021[132]
LINC00665CellsNACTNNB1, Wnt signalingproliferation, migration, invasion, EMTApril 2021[41]
LINC00673Cells and serumNAcell cycle, p53 pathwayproliferation, cell cycle, tumor growthMay 2021[133]
LINC00707Cells and tissuesmiR-382-5pVEGFAproliferation, tumor growthJune 2021[134]
LINC00885Cells and tissuesmiR-3150b-3pBAZ2AProliferation, apoptosis, tumor growthJan. 2022[101]
LINC00885Cells and tissuesNANAproliferation, invasion, EMTJune 2021[135]
LINC00899Cells and tissuesmiR-944ESR1proliferation, migration, invasionJune 2021[136]
LINC00997CellsmiR-574-3pCUL2, MAPKproliferation, migration, invasion, autophagyJuly 2021[44]
LINC01133Cells and tissuesmiR-30a-5pFOXD1proliferation, metastasis, apoptosisJune 2021[137]
LNMASTissuesNATWIST, STC1metastasis, EMT, immune evasionFeb. 2022[138]
LOXL1-AS1Cells and tissuesmiR-423-5pENC1, MEK/ERK pathwayproliferation, migration, invasion, angiogenesis, tumor growthJan. 2022[43]
MAG12-AS3TissuesmiR-15bCCNE1proliferation, invasionJan. 2022[139]
MALAT1Cells and tissuesNANAproliferation, invasion, migrationAug. 2021[140]
MALAT1CellsmiR-485-5pMAT2AproliferationNov. 2021[141]
MALAT1Cells and tissuesmiR-124-5pNAproliferation, tumor growthNov. 2021[142]
MEF2C-AS1Cells and tissuesmiR-592RSPO1proliferation, migration, invasionJune 2021[143]
MEG3Cells and tissuesmiR-7-5pSTC1ERs-mediated apoptosisMay 2021[144]
MiIR503HGCells and tissuesmiR-191CEBPBproliferation, metastasis, apoptosisApril 2021[145]
NEAT1Cells and tissuesmiR-377FGFR1proliferation, migration, apoptosisJan. 2022[146]
NEAT1Cells and tissuesmiR-34aLDHAdrug-resistant, glycolysis rateJuly 2021[147]
OIP5-AS1Cells and tissuesmiR-124-5pIDH2/HIF1aproliferation, Hypoxia, Warburg effectAug. 2021[73]
OIP5-AS1Cells and tissuesMiR-147aIGF1R, E-cadherinmigration, invasion, EMTMar. 2022[148]
OTUD6B-AS1CellsmiR-206cyclinD2drug-resistantOct. 2021[149]
RPL34-AS1CellsNARPL34proliferation, migration, invasion, May 2021[85]
SNHG15Cells and tissuesmiR-4735-39HIF1atumor progressionJan. 2022[72]
SNHG17SerummiR-375-3pNAproliferation, migration, invasionJune 2021[150]
SNHG3Cells and tissuesNAYAP1proliferation, migration, invasion, tumor growthJan. 2022[56]
SNHG5Cells and tissuesmiR-132SOX4proliferation, migration, invasionMar. 2021[151]
SNHG6Cells and tissuesmiR-485-3pUCK2, Wntproliferation, migration, invasion, EMTNov. 2021[37]
SPINT1-AS1Cells and tissuesmiR-214Wntproliferation, migration, invasion, tumor growthJuly 2021[39]
TDRG1Cells and tissuesmiR-214-5pSEMA4Cinvasion, tumor growth, hypoxia-induced glycolysisApril 2021[74]
UCA1Cells and tissuesmiR-299-3pNAproliferation, invasionNov. 2021[152]
UNC5B-AS1Cells and tissuesmiR-4455RSPO4proliferation, migration, invasion, apoptosisDec. 2021[153]
USP30-AS1Cells and tissuesmiR-299-3pPTP4A1proliferation, migration, invasion, tumor growthJuly 2021[154]
WT1-ASCells and tissuesNASPL1/PIK3AP1proliferation, autophagy, apoptosis, tumor progressionJuly 2021[155]
WTA-ASCells and tissuesmiR-205NAcell cycle, apoptosis, migration, invasion, EMT, tumor growthDec. 2021[156]
ZFAS1CellsMiR-190a-3pKLF6proliferation, invasion, migrationFeb. 2022[100]
Note: NA: not available.

4. Epitranscriptomic Regulation of lncRNAs in Cervical Cancer

The epitranscriptome refers to the complete ensemble of chemical modifications affecting the RNA transcripts (coding and non-coding RNAs), and epitranscriptomics is an emerging field in molecular medicine with vast potential. Epitranscriptomics research encompasses many RNA modifications (more than 160 types of modifications) without changes in their sequences, which are widespread among RNA transcripts. Three kinds of key proteins manage the tunable modifications of RNA between generations: writers, erasers, and readers [157,158,159,160]. In the lncRNA transcriptome, N6-methyladenosine (m6A) contains the highest amount and a wide range of important functions, followed by m5C and ψ [161]. Elucidating the modification of lncRNAs provides a fundamental pathway for understanding gene regulation and relevant cellular processes that contribute to disease development.
m6A-modified lncRNAs were reported to serve as potential biomarkers for predicting prognoses and immune response in patients with cervical cancer [162]. Several lncRNAs have been regulated via an epitranscriptomic mechanism. lncRNA FOXD2-ASZ1 expression was significantly upregulated in cervical cancer cells and tissues, correlating with the unfavorable prognosis. The functional assays demonstrated that FOXD2-AS1 promoted migration and proliferation of cervical cancer cells, while FOXD2-AS1 silencing repressed the tumor growth in vivo. Notably, m6A “writer”, METTL3, enhanced the stability of FOXD2-AS1 and recruited lysine-specific demethylase 1 (LSD1) to the promoter region of p21 to silence its transcription abundance [102]. Dysregulation of another lncRNA KCNMB2-AS1 correlated with poor cervical cancer outcomes. The higher KCNMB2-AS1 expression associated with a shorter survival time. Mechanically, KCNMB2-AS1 was predominantly located in the cytoplasm and served as a ceRNA to abundantly sponge miR-130b-5p and miR-4294, resulting in the upregulation of IGF2BP3, a well-documented oncogene in cervical cancer. Moreover, IGF2BP3 acted as an m6A “reader” to bind m6A-modified KCNMB2-AS1, therefore stabilizing KCNMB2-AS1. Thus, KCNMB2-AS1 and IGF2BP3 formed a positive regulatory circuit that enlarged the tumorigenic effect of KCNMB2-AS1 in cervical cancer [163]. In addition, the lncRNA GAS5-AS1 expression in cervical cancer tissues was markedly decreased compared to adjacent normal tissues. The downregulation of GAS5-AS1 significantly correlated with poor outcomes in patients with cervical cancer. The Kaplan-Meier survival curve and the log-rank test demonstrated that patients with high-level GAS5-AS1 had better overall survival than those with low-level GAS5-AS1. GAS5-AS1 drastically reduced cell proliferation, migration, and invasion in vitro. It also remarkably suppressed tumorigenicity and metastasis in vivo via interacting with the tumor suppressor GAS5 and increased its stability by interacting with RNA demethylase ALKBH5 and decreasing m6A modification of GAS5. Moreover, m6A-mediated GAS5 RNA degradation was shown to rely on the m6A reader protein YTHDF2-dependent pathway [164]. LncRNA HOXC13-AS is also regulated via the m6A mechanism. HOXC13-AS was elevated in cervical cancer and positively correlated with FZD6, a ‘Frizzled’ gene family member serving as a receptor for Wnt signaling proteins. FTO acted as an m6A “eraser” to reduce m6A and stabilize HOXC13-AS linking to the upregulation of HOXC13-AS in cervical cancer [124].

5. Conclusions and Future Perspectives

Considerable progress has been made in recent years to study the role and molecular mechanisms underlying the lncRNA-mediated cellular events which contribute to the initiation, development, and progression of cancers, including cervical cancer. LncRNAs can be regulated via epitranscriptomic and epigenetic mechanisms. LncRNAs can interact with epigenome and miRNAs resulting in altering the transcriptome and dysregulating the oncogenes and tumor suppressors, therefore leading to cervical cancer progression (Figure 2). However, several aspects need to be further elucidated, including (1) characterizing the interaction of lncRNAs with other RNAs, (2) elucidating the interaction of lncRNA with chromatin structure and other epigenetic regulations, (3) characterizing the role of lncRNAs in transcriptional regulation via interacting with DNA and proteins, and (4) investigating the role of lncRNAs in post-transcriptional regulation in cervical cancer. This deep mechanistic investigation will better understand the drug resistance, immune escape, and environmental impact in cervical cancer. Thorough research of lncRNAs is needed to characterize their functional role in cervical cancer. Clinical application of molecular inhibitors targeting unique lncRNAs might provide a novel option for the personalized treatment of cancer patients.
In conclusion, lncRNAs play a critical role in abnormal proliferation, migration, invasion, EMT, and tumor growth in cervical cancers via multiple mechanisms, which provide potential targets for treating female patients with cervical cancer. Comprehensive and deep insights into molecular mechanisms underlying the pathogenesis of cervical cancer will offer novel and better options for early detection, diagnosis, and treatment for this aggressive disease.

Author Contributions

Q.Y. conceived the manuscript, Q.Y. wrote the original manuscript, Q.Y. and A.A.-H. edited the manuscript. All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported in part by National Institutes of Health (grant numbers: RO1 ES028615, RO1 HD094378, U54 MD007602, RO1 HD094380, and HD106285).

Acknowledgments

Figures were generated using BioRender.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Schematic representation of Wnt, TGF-β, and Hippo pathways regulated by lncRNAs in cervical cancer.
Figure 1. Schematic representation of Wnt, TGF-β, and Hippo pathways regulated by lncRNAs in cervical cancer.
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Figure 2. Role and regulatory mechanism of lncRNAs in cervical carcinogenesis. lncRNAs can regulate gene expression networks via regulating microRNAs, histone modifications, DNA methylation dynamics and others, resulting in altering the key pathways and oncogenes/tumor suppressor genes triggering the pathogenesis of cervical carcinogenesis. In addition, aberrant expression of lncRNAs in cervical cancer is modulated by epitranscriptional, epigenetic, and other mechanisms.
Figure 2. Role and regulatory mechanism of lncRNAs in cervical carcinogenesis. lncRNAs can regulate gene expression networks via regulating microRNAs, histone modifications, DNA methylation dynamics and others, resulting in altering the key pathways and oncogenes/tumor suppressor genes triggering the pathogenesis of cervical carcinogenesis. In addition, aberrant expression of lncRNAs in cervical cancer is modulated by epitranscriptional, epigenetic, and other mechanisms.
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Yang, Q.; Al-Hendy, A. The Regulatory Functions and the Mechanisms of Long Non-Coding RNAs in Cervical Cancer. Cells 2022, 11, 1149. https://doi.org/10.3390/cells11071149

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Yang Q, Al-Hendy A. The Regulatory Functions and the Mechanisms of Long Non-Coding RNAs in Cervical Cancer. Cells. 2022; 11(7):1149. https://doi.org/10.3390/cells11071149

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Yang, Qiwei, and Ayman Al-Hendy. 2022. "The Regulatory Functions and the Mechanisms of Long Non-Coding RNAs in Cervical Cancer" Cells 11, no. 7: 1149. https://doi.org/10.3390/cells11071149

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