Merkel Cell Polyomavirus and DNA Damage Response (DDR): Transcriptional Analysis of DDR Pathways in the Context of Merkel Cell Carcinoma
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection
2.2. Histological Diagnosis
2.3. DNA Extraction
2.4. Detection of MCPyV DNA by Polymerase Chain Reaction (qPCR)
2.5. PCR for LTAg, VP1 and NCCR Regions and Sequencing
2.6. Sequencing Analysis of LTAg
2.7. Analysis of Viral Integration Sites
2.8. RNA Extraction and Analysis
2.9. Viral miRNA Analysis
2.10. Detection of LT by Immunohistochemistry
2.11. Analysis of DDR Genes’ Expression
2.12. Statistical Analysis
3. Results
3.1. Detection of MCPyV DNA by qPCR and PCR
3.2. Analysis of Viral Sequences
3.3. Viral Integration
3.4. Expression of LT and VP1 Transcripts
3.5. Viral miRNA Expression
3.6. Detection of LT Protein
3.7. Relative Expression of DDR Genes
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| DDR | DNA damage response |
| ATM | ataxia-telangiectasia mutated |
| ATR | ataxia telangiectasia and Rad3-related |
| DSB | double-strand break |
| SSBs | single-strand break |
| CHK | checkpoint kinase |
| MCPyV | Merkel cell polyomavirus |
| LT | large T |
| sT | small T |
| Ag | antigen |
| ALTO | alternative LT open reading frame |
| VP | viral protein |
| miRNA | microRNA |
| NCCR | non-coding control region |
| MCC | Merkel cell carcinoma |
| UV | ultraviolet |
| tLT | truncated LT |
| Ser | serine |
| FFPE | formalin-fixed paraffin-embedded |
| PCR | polymerase chain reaction |
| qPCR | quantitative PCR |
| DIPS | detection of the integrated papilloma sequence |
| RT | reverse-transcribed |
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| Sample ID | Sex | Viral Load | LTAg | NCCR | VP1 | LTAg | Integration Sites | IHC | ||
|---|---|---|---|---|---|---|---|---|---|---|
| (Copies/mL) | LT1 | LT3 | Viral Junction | Cellular Junction | LT | |||||
| MCC3 | F | 8 × 102 | + | + | canonical | canonical | truncated | 1952-3′ | 6p22.3 | + |
| MCC4 | M | 7.25 × 102 | + | + | canonical | canonical | truncated | 2234-3′ | 6p12.3 | + |
| MCC5 | M | 2.07 × 102 | + | + | canonical | canonical | truncated | 1776-3′ | 6q24.1 | + |
| MCC6 | F | 5 × 101 | + | + | canonical | canonical | truncated | 2351-3′ | 4p15.2 | − |
| MCC8 | M | 3.2 × 101 | + | + | canonical | canonical | truncated | 1522-3′ | 1p36.2 | + |
| MCC9 | M | 7.5 × 101 | + | + | canonical | canonical | truncated | 2952-3′ | 5q35.1 | + |
| MCC11 | M | 1.07 × 102 | + | + | canonical | canonical | truncated | 2597-3′ | 5q11.2 | NA |
| MCC16 | M | 1.21 × 102 | + | + | canonical | canonical | truncated | 1399-3′ | 5q11.2 | NA |
| MCC17 | M | 1.15 × 102 | + | + | canonical | canonical | truncated | 2843-3′ | 5q11.2 | NA |
| MCC18 | M | 8 × 102 | + | + | canonical | canonical | truncated | 5′-2738 | 5q23.1 | NA |
| MCC19 | M | 7.5 × 102 | + | + | canonical | canonical | truncated | 5′-2597 | 5q11.2 | NA |
| Sample ID | LTAg | VP1 | miR-5p |
|---|---|---|---|
| MCC3 | + | − | − |
| MCC4 | + | − | − |
| MCC5 | + | − | − |
| MCC6 | + | − | − |
| MCC8 | + | − | − |
| MCC9 | + | − | − |
| MCC11 | + | − | − |
| MCC16 | + | − | − |
| MCC17 | + | − | − |
| MCC18 | + | − | − |
| MCC19 | + | − | − |
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Messina, S.; Mallardo, D.; Ferlosio, A.; Festino, L.; Trojaniello, C.; Di Trolio, R.; Ciotti, M.; Ascierto, P.A.; Pietropaolo, V.; Passerini, S. Merkel Cell Polyomavirus and DNA Damage Response (DDR): Transcriptional Analysis of DDR Pathways in the Context of Merkel Cell Carcinoma. Cancers 2026, 18, 1592. https://doi.org/10.3390/cancers18101592
Messina S, Mallardo D, Ferlosio A, Festino L, Trojaniello C, Di Trolio R, Ciotti M, Ascierto PA, Pietropaolo V, Passerini S. Merkel Cell Polyomavirus and DNA Damage Response (DDR): Transcriptional Analysis of DDR Pathways in the Context of Merkel Cell Carcinoma. Cancers. 2026; 18(10):1592. https://doi.org/10.3390/cancers18101592
Chicago/Turabian StyleMessina, Sara, Domenico Mallardo, Amedeo Ferlosio, Lucia Festino, Claudia Trojaniello, Rossella Di Trolio, Marco Ciotti, Paolo Antonio Ascierto, Valeria Pietropaolo, and Sara Passerini. 2026. "Merkel Cell Polyomavirus and DNA Damage Response (DDR): Transcriptional Analysis of DDR Pathways in the Context of Merkel Cell Carcinoma" Cancers 18, no. 10: 1592. https://doi.org/10.3390/cancers18101592
APA StyleMessina, S., Mallardo, D., Ferlosio, A., Festino, L., Trojaniello, C., Di Trolio, R., Ciotti, M., Ascierto, P. A., Pietropaolo, V., & Passerini, S. (2026). Merkel Cell Polyomavirus and DNA Damage Response (DDR): Transcriptional Analysis of DDR Pathways in the Context of Merkel Cell Carcinoma. Cancers, 18(10), 1592. https://doi.org/10.3390/cancers18101592

