Using Canopy Measurements to Predict Soybean Seed Yield
Abstract
1. Introduction
2. Materials and Methods
3. Results and Discussion
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- NASS-USDA. Crop Production. 2020. Available online: https://www.nass.usda.gov/Quick_Stats/Lite/index.php (accessed on 16 August 2021).
- Hong, D.; Yokoya, N.; Chanussot, J.; Zhu, X.X. An Augmented Linear Mixing Model to Address Spectral Variability for Hyperspectral Unmixing. IEEE Trans. Image Process. 2019, 28, 1923–1938. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Rouse, J.W.; Haas, R.H.; Schnell, J.; Deering, D.W. Monitoring vegetation systems in the great plains with ERTS. NASA Spec. Publ. 1974, 351, 309–317. [Google Scholar]
- Estep, L.; Terrie, G.; Davis, B. Crop stress detection using AVIRIS hyperspectral imagery and artificial neural networks. Int. J. Remote Sens. 2004, 25, 4999–5004. [Google Scholar] [CrossRef] [Scilit]
- Thapa, S.; Rudd, J.C.; Xue, Q.; Bhandari, M.; Reddy, S.K.; Jessup, K.E.; Liu, S.; Devkota, R.N.; Baker, J.; Baker, S. Use of NDVI for characterizing winter wheat response to water stress in a semi-arid environment. J. Crop. Improv. 2019, 33, 633–648. [Google Scholar] [CrossRef] [Scilit]
- Stoms, D.M.; Hargrove, W.W. Potential NDVI as a baseline for monitoring ecosystem functioning. Int. J. Remote Sens. 2000, 21, 401–407. [Google Scholar] [CrossRef] [Scilit]
- Xu, C.; Katchova, A.L. Predicting Soybean Yield with NDVI Using a Flexible Fourier Transform Model. J. Agric. Appl. Econ. 2019, 51, 402–416. [Google Scholar] [CrossRef] [Scilit]
- Ma, B.L.; Dwyer, L.M.; Costa, C.; Cober, E.R.; Morrison, M.J. Early prediction of soybean yield from canopy reflectance measurements. Agron. J. 2001, 93, 1227–1234. [Google Scholar] [CrossRef] [Scilit]
- Mourtzinis, S.; Rowntree, S.C.; Suhre, J.J.; Weidenbenner, N.H.; Wilson, E.W.; Davis, V.M.; Naeve, S.L. The use of reflectance data for in-season soybean yield prediction. Agron. J. 2014, 106, 115–1168. [Google Scholar] [CrossRef] [Scilit]
- Vannoppen, A.; Gobin, A.; Kotova, L.; Top, S.; De Cruz, L.; Viksna, A.; Aniskevich, S.; Bobylev, L.; Buntemeyer, L.; Caluwaerts, S.; et al. Wheat yield estimation from NDVI and regional climate models in Latvia. Remote Sens. 2020, 12, 2206. [Google Scholar] [CrossRef] [Scilit]
- Teal, R.K.; Tubana, B.; Girma, K.; Freeman, K.W.; Arnall, D.B.; Walsh, O.; Raun, W.R. In-Season Prediction of Corn Grain Yield Potential Using Normalized Difference Vegetation Index. Agron. J. 2006, 98, 1488–1494. [Google Scholar] [CrossRef] [Scilit]
- Genovese, G.; Vignolles, C.; Nègre, T.; Passera, G. A methodology for a combined use of normalised difference vegetation index and CORINE land cover data for crop yield monitoring and forecasting. A case study on Spain. Agronomie 2001, 21, 91–111. [Google Scholar] [CrossRef] [Scilit]
- Harrell, D.L.; Tubaña, B.S.; Walker, T.W.; Phillips, S.B. Estimating Rice Grain Yield Potential Using Normalized Difference Vegetation Index; Estimating Rice Grain Yield Potential Using Normalized Difference Vegetation Index. Agron. J. 2011, 103, 1717–1723. [Google Scholar] [CrossRef] [Scilit]
- Vannoppen, A.; Gobin, A. Estimating Farm Wheat Yields from NDVI and Meteorological Data. Agronomy 2021, 11, 946. [Google Scholar] [CrossRef] [Scilit]
- Lee, C.D. Reducing Row Widths to Increase Yield: Why It Does Not Always Work. Crop. Manag. 2006, 5, 1–7. [Google Scholar] [CrossRef] [Scilit]
- Wells, R. Soybean Growth Response to Plant Density: Relationships among Canopy Photosynthesis, Leaf Area, and Light Interception. Crop. Sci. 1991, 31, 755–761. [Google Scholar] [CrossRef] [Scilit]
- Egli, D.B. Mechanisms responsible for soybean yield response to equidistant planting patterns. Agron. J. 1994, 86, 1046–1049. [Google Scholar] [CrossRef] [Scilit]
- Patrignani, A.; Ochsner, T.E. Canopeo: A powerful new tool for measuring fractional green canopy cover. Agron. J. 2015, 107, 2312–2320. [Google Scholar] [CrossRef] [Scilit]
- Wilhelm, W.W.; Ruwe, K.; Schlemmer, M.R. Comparison of three leaf area index meters in a corn canopy. Crop. Sci. 2000, 40, 1179–1183. [Google Scholar] [CrossRef] [Scilit]
- Perry, E.M.; Fitzgerald, G.J.; Poole, N.; Craig, S.; Whitlock, A. Ndvi from Active Optical Sensors as a Measure of Canopy Cover and Biomass. Int. Arch. Photogramm. Remote. Sens. Spat. Inf. Sci. 2012, 317–319. [Google Scholar] [CrossRef] [Scilit]
- Goodwin, A.W.; Lindsey, L.E.; Harrison, S.K.; Paul, P.A. Estimating wheat yield with normalized difference vegetation index and fractional green canopy cover. Crop. Forage Turfgrass Manag. 2018, 4, 1–6. [Google Scholar] [CrossRef] [Scilit]
- Singer, J.W. Soybean light interception and yield response to row spacing and biomass removal. Crop. Sci. 2001, 41, 424–429. [Google Scholar] [CrossRef] [Scilit]
- Gardner, F.P.; Auma, E.O. Canopy structure, light interception, and yield and market quality of peanut genotypes as influenced by planting pattern and planting date. F. Crop. Res. 1989, 20, 13–29. [Google Scholar] [CrossRef] [Scilit]
- Chang, K.W.; Shen, Y.; Lo, J.C. Predicting rice yield using canopy reflectance measured at booting stage. Agron. J. 2005, 97, 872–878. [Google Scholar] [CrossRef] [Scilit]
- Schmitz, P.K.; Stanley, J.D.; Kandel, H.J. Row Spacing and Seeding Rate Effect on Soybean Seed Yield in North Dakota. Crop. Forage Turfgrass Manag. 2020, 6, e20010. [Google Scholar] [CrossRef] [Scilit]
- Stanley, J.D. Yield-Limiting Factors in North Dakota Soybean Fields. Master’s Thesis, North Dakota State University, Fargo, ND, USA, 2017. [Google Scholar]
- Mourtzinis, S.; Conley, S.P. Delineating soybean maturity groups across the US. Agron. J. 2017, 109, 1397–1403. [Google Scholar] [CrossRef] [Scilit]
- Andrade, F.H.; Calviño, P.; Cirilo, A.; Barbieri, P. Yield Responses to Narrow Rows Depend on Increased Radiation Interception. Agron. J. 2002, 94, 975–980. [Google Scholar] [CrossRef] [Scilit]
- Kandel, H.; Endres, G. Soybean Production Field Guide for North Dakota; A1172 (revised); North Dakota State University: Fargo, ND, USA, 2019. [Google Scholar]
- Fehr, W.R.; Caviness, C.E.; Burmood, D.T.; Pennington, J.S. Stage of Development Descriptions for Soybeans, Glycine Max (L.) Merrill1. Crop. Sci. 1971, 11, 929–931. [Google Scholar] [CrossRef] [Scilit]
- Kumar, S.; Attri, S.D.; Singh, K.K. Comparison of lasso and stepwise regression technique for wheat yield prediction. J. Agrometeorol. 2019, 21, 188–192. [Google Scholar]
- Burnham, K.P.; Anderson, D.R. Information and likelihood theory: A basis for model selection and inference. In e: A Practical Information-Theoretic Approach; Springer: New York, NY, USA, 2004. [Google Scholar]
- Lollato, R.P.; Diaz, D.A.R.; DeWolf, E.; Knapp, M.; Peterson, D.E.; Fritz, A.K. Agronomic practics for reducing wheat yield gaps: A quantitative appraisal of progressive producers. Crop. Sci. 2019, 59, 333–350. [Google Scholar] [CrossRef] [Scilit]
- Derksen, S.; Keselman, H.J. Backward, forward and stepwise automated subset selection algorithms: Frequency of obtaining authentic and noise variables. Br. J. Math. Stat. Psychol. 1992, 45, 265–282. [Google Scholar] [CrossRef] [Scilit]
- Ma, B.L.; Morrison, M.J.; Dwyer, L.M. Canopy light reflectance and field greenness to assess nitrogen fertilization and yield of maize. Agron. J. 1996, 88, 915–920. [Google Scholar] [CrossRef] [Scilit]
- Vega, C.R.; Andrade, F.H.; Sadras, V.O.; Uhart, S.A.; Valentinuz, O.R. Seed number as a function of growth. A comparative study in soybean, sunflower, and maize. Crop. Sci. 2001, 41, 748–754. [Google Scholar] [CrossRef] [Scilit]
- Board, J. Light interception efficiency and light quality affect yield compensation of soybean at low plant populations. Crop. Sci. 2000, 40, 1285–1294. [Google Scholar] [CrossRef] [Scilit]
- Christenson, B.S.; Schapaugh, W.T.; An, N.; Price, K.P.; Prasad, V.; Fritz, A.K. Predicting soybean relative maturity and seed yield using canopy reflectance. Crop. Sci. 2016, 56, 625–643. [Google Scholar] [CrossRef] [Scilit]
- Hoyos-Villegas, V.; Fritschi, F.B. Relationships among vegetation indices derived from aerial photographs and soybean growth and yield. Crop. Sci. 2013, 53, 2631–2642. [Google Scholar] [CrossRef] [Scilit]
- Aparicio, N.; Villegas, D.; Casadesus, J.; Araus, J.L.; Royo, C. Spectral vegetation indices as nondestructive tools for determining durum wheat yield. Agron. J. 2000, 92, 83–91. [Google Scholar] [CrossRef] [Scilit]
- Zaman-Allah, M.; Vergara, O.; Araus, J.L.; Tarekegne, A.; Magorokosho, C.; Zarco-Tejada, P.J.; Hornero, A.; Albà, A.H.; Das, B.; Craufurd, P.; et al. Unmanned aerial platform-based multi-spectral imaging for field phenotyping of maize. Plant Methods 2015, 11, 35. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Tibshirani, R.J. The LASSO method for variable selection in the cox model. Stat. Med. 1997, 16, 385–395. [Google Scholar] [CrossRef] [Scilit]
- Wei, M.C.F.; Molin, J.P. Soybean yield estimation and its components: A linear regression approach. Agriculture 2020, 10, 384. [Google Scholar] [CrossRef] [Scilit]
- Schmitz, P.K.; Kandel, H.J. Individual and Combined Effects of Planting Date, Seeding Rate, Relative Maturity, and Row Spacing on Soybean Yield. Agronomy 2021, 11, 605. [Google Scholar] [CrossRef] [Scilit]
- Yu, N.; Li, L.; Schmitz, N.; Tian, L.F.; Greenberg, J.A.; Diers, B.W. Development of methods to improve soybean yield estimation and predict plant maturity with an unmanned aerial vehicle based platform. Remote Sens. Environ. 2016, 187, 91–101. [Google Scholar] [CrossRef] [Scilit]
- Maimaitijiang, M.; Sagan, V.; Sidike, P.; Hartling, S.; Esposito, F.; Fritschi, F.B. Soybean yield prediction from UAV using multimodal data fusion and deep learning. Remote Sens. Environ. 2020, 237, 111599. [Google Scholar] [CrossRef] [Scilit]
- Zhang, X.; Zhao, J.; Yang, G.; Liu, J.; Cao, J.; Li, C.; Zhao, X.; Gai, J. Establishment of plot-yield prediction models in soybean breeding programs using UAV-based hyperspectral remote sensing. Remote Sens. 2019, 11, 2752. [Google Scholar] [CrossRef] [Scilit]
- Hong, D.; Gao, L.; Yao, J.; Zhang, B.; Plaza, A.; Chanussot, J. Graph Convolutional Networks for Hyperspectral Image Classification. IEEE Trans. Geosci. Remote Sens. 2021, 59, 5966–5978. [Google Scholar] [CrossRef] [Scilit]
- Yao, J.; Meng, D.; Zhao, Q.; Cao, W.; Xu, Z. Nonconvex-Sparsity and Nonlocal-Smoothness-Based Blind Hyperspectral Unmixing. IEEE Trans. Image Process. 2019, 28, 2991–3006. [Google Scholar] [CrossRef] [Scilit] [PubMed]
| Location | Soil Series | Soil Taxonomy | Tillage | PC 1 | GPS |
|---|---|---|---|---|---|
| Casselton | Kindred | Fine-silty, mixed, superactive, frigid Typic Endoaquolls | CT | SB | 46.882, −97.251 |
| Bearden | Fine-silty, mixed, superactive, frigid Aeric Calciaquolls | ||||
| Fargo | Fargo | Fine, smectitic, frigid Typic Epiaquerts | NT | W | 46.932, −96.859 |
| Ryan | Fine, smectitic, frigid Typic Natraquerts | ||||
| Prosper | Bearden | Fine-silty, mixed, superactive, frigid Aeric Calciaquolls | CT | W | 47.001, −97.112. |
| Lindaas | Fine, smectitic, frigid Typic Argiaquolls |
| Location | Planting Date | |||||||
|---|---|---|---|---|---|---|---|---|
| 1 | 2 | Depth | NO3-N | P | K | pH | OM | |
| DOY 1 | cm | kg ha−1 | mg kg−1 | g kg−1 | ||||
| ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ 2019 ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ | ||||||||
| Casselton | 137 | 154 | 0–15 | 16 | 8 | 368 | 7.4 | 5.2 |
| 15–61 | 37 | 7 | 303 | 7.5 | 3.9 | |||
| Fargo | 137 | 154 | 0–15 | 8 | 15 | 495 | 7.8 | 5.8 |
| 15–61 | 14 | 5 | 300 | 7.8 | 4.0 | |||
| Prosper | 136 | 149 | 0–15 | 35 | 20 | 232 | 7.9 | 3.4 |
| 15–61 | 57 | 6 | 176 | 8.2 | 2.5 | |||
| ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ 2020 ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ ─ | ||||||||
| Casselton | 142 | 153 | 0–15 | 19 | 18 | 360 | 7.5 | 4.8 |
| 15–61 | 18 | 7 | 279 | 7.8 | 4.5 | |||
| Fargo | 133 | 149 | 0–15 | 22 | 18 | 489 | 7.7 | 5.4 |
| 15–61 | 26 | 6 | 353 | 8.0 | 4.0 | |||
| Prosper | 143 | 153 | 0–15 | 21 | 30 | 269 | 7.2 | 4.5 |
| 15–61 | 24 | 17 | 216 | 7.4 | 3.2 | |||
| FGCC 1 | PAR | NDVI | ||||
|---|---|---|---|---|---|---|
| Stage 2 | R2 3 | RMSE | R2 | RMSE | R2 | RMSE |
| V2 | 0.05 | 710 | 0.01 | 728 | 0.01 | 725 |
| V4 | 0.21 | 646 | 0.21 | 647 | 0.19 | 653 |
| R1 | 0.43 | 551 | 0.24 | 635 | 0.41 | 560 |
| R3 | 0.49 | 519 | 0.30 | 608 | 0.05 | 708 |
| R5 | 0.52 | 507 | 0.01 | 724 | 0.65 | 434 |
| R7 | 0.16 | 668 | 0.23 | 637 | 0.01 | 728 |
| Parameter 1 | Stepwise Regression | Lasso Regression |
|---|---|---|
| Adj. R2 | 0.68 | 0.66 |
| Validated Adj. R2 | 0.69 | 0.67 |
| RMSE | 411 | 425 |
| AIC | 3346 | 3362 |
| Variables Used 2 | NDVI.R1 PAR.R1 NDVI.R3 FGCC.R3 NDVI.R5 PAR.R5 | NDVI.R1 NDVI.R3 FGCC.R3 NDVI.R5 FGCC.R5 |
| Method | Equation 1 |
|---|---|
| Stepwise | Ŷ = 874 × NDVI.R1 − 8 × PAR.R1 + 1913 × NDVI.R3 + 9 × FGCC.R3 + 9357 × NDVI.R5 – 13 × PAR.R5 − 5604 |
| Lasso | Ŷ = 40 × NDVI.R1 + 562 × NDVI.R3 + 7 × FGCC.R3 + 8185 × NDVI.R5 + 5 × FGCC.R5 − 4921 |
| Established Plant Density | ||||||
|---|---|---|---|---|---|---|
| FGCC 1 | PAR | NDVI | ||||
| Stage 2 | Adj. R2 3 | RMSE | Adj. R2 | RMSE | Adj. R2 | RMSE |
| V2 | 0.05 | 711 | 0.01 | 729 | 0.01 | 726 |
| V4 | 0.22 | 643 | 0.21 | 647 | 0.20 | 654 |
| R1 | 0.44 | 548 | 0.24 | 636 | 0.42 | 557 |
| R3 | 0.49 | 519 | 0.30 | 609 | 0.05 | 710 |
| R5 | 0.52 | 508 | 0.01 | 725 | 0.65 | 435 |
| R7 | 0.16 | 669 | 0.23 | 638 | 0.01 | 729 |
| FGCC 1 | Adj. R2 | RMSE | Equation |
|---|---|---|---|
| Growth Stage 2 | |||
| R3 | 0.49 | 510 | Ŷ = 33.4 × FGCC.R3 + 662.3 |
| R5 | 0.52 | 510 | Ŷ = 50.3 × FGCC.R5 − 868.2 |
| R3 R5 | 0.54 | 479 | Ŷ = 18.8 × FGCC.R3 + 29.4 × FGCC.R5 − 603.2 |
| V2 R1 R3 R5 | 0.56 | 470 | Ŷ = −7 × FGCC.V2 + 7 × FGCC.R1 + 13 × FGCC.R3 + 25 × FGCC.R5 − 132 3 |
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Schmitz, P.K.; Kandel, H.J. Using Canopy Measurements to Predict Soybean Seed Yield. Remote Sens. 2021, 13, 3260. https://doi.org/10.3390/rs13163260
Schmitz PK, Kandel HJ. Using Canopy Measurements to Predict Soybean Seed Yield. Remote Sensing. 2021; 13(16):3260. https://doi.org/10.3390/rs13163260
Chicago/Turabian StyleSchmitz, Peder K., and Hans J. Kandel. 2021. "Using Canopy Measurements to Predict Soybean Seed Yield" Remote Sensing 13, no. 16: 3260. https://doi.org/10.3390/rs13163260
APA StyleSchmitz, P. K., & Kandel, H. J. (2021). Using Canopy Measurements to Predict Soybean Seed Yield. Remote Sensing, 13(16), 3260. https://doi.org/10.3390/rs13163260

