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Sustainability
  • Article
  • Open Access

30 November 2022

Morphological Characterization of Some Local Varieties of Fig (Ficus carica L.) Cultivated in Southern Italy

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and
Dipartimento delle Culture Europee e del Mediterraneo: Architettura, Ambiente, Patrimoni Culturali, Università degli Studi della Basilicata, Via Lanera, 20, 75100 Matera, Italy
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Author to whom correspondence should be addressed.
This article belongs to the Special Issue Biodiversity 2021: Agriculture, Environment and Wellbeing

Abstract

Figs (Ficus carica L.) are ancient fruits of the Mediterranean basin. In Southern Italy, they are particularly important in the traditional course of local cuisine. In Southern Italy, fig trees are rarely cultivated in specialized orchards but are present in association with other fruit trees (for example, olive, almond, pear, pomegranate, and grapevine). These mixed orchards are particularly important in the traditional agroecosystems of the south of Italy. This study reports preliminary results on the local fig variety’s leaf morphological characterization, aiming to elucidate the presence of synonymousness or homonymy for in situ and ex situ conservation and further exploitation. A field survey was carried out during the summer of 2018 in some areas of the Basilicata district. Thirty local putative varieties were collected, and each of them was identified by GPS coordinates and recorded photographically. Moreover, they were cataloged with the name of the Municipality of origin, year, details of growing location (main crop, mixed orchard, gardens, and single plants), approximate age, and the local name supplied by the donor. All relevant information was included in the accession code. Leaf samples were collected from each accession from medium-length shoots. A digital image of each leaf sample was captured using a digital camera. Leaf morphometric traits were recorded using ImageJ and statistically analyzed using the software PAST 4.11 to discriminate among fig accessions. The multivariate morphometric approach applied correctly classified more than 90% of the leaves and helped to discriminate among accession. Moreover, linear discriminant analysis helped to recognize the presence of different synonymousness and homonymy of different accessions. The results revealed that measured leaf morphometric aided by image analysis could be a simple and inexpensive accessions classification tool.

1. Introduction

Ficus carica L., a member of the Moraceae family, is a cropped (and wild) species largely diffused along the Mediterranean basin, where it has been cultivated for millennia [1]. Recent statistics show that fig is cultivated worldwide on 281,522 hectares; Mediterranean countries (Morocco, Turkey, Algeria, and Egypt) share about 65% of the cropped area [2]. In Italy, figs are cultivated on 2117 hectares almost entirely (96%) located in the south of Italy [3].
In most areas of Southern Italy, figs are typically cultivated in gardens or small rain-fed orchards in association with other fruit tree species (e.g., olive, almond, apricot, pear, pomegranate, and grapevine). These traditional agroecosystems and related indigenous cultures are relevant for biodiversity conservation purposes, securing food production, the diversification of agricultural systems and diet, and adaptation of agriculture to changing climatic conditions. These principles are summarized in part 2 of the convention on biological diversity (CBD), which defines sustainability as “the use of components of biological diversity in a way and at a rate that does not lead to the long-term decline of biological diversity, thereby maintaining its potential to meet the needs and aspirations of present and future generations”.
Few surveys have been conducted to explore, characterize and identify the fig local varieties of Basilicata hampering adequate conservation or developing programs.
Considering that fig has limited chilling unit needs and that it is drought-tolerant [4], an improved knowledge of the fig germplasm variability might support sustainable agriculture by the replacement of high chilling temperatures and water-demanding species triggered by changing climatic scenario with increasing drought and mild winter occurrence [5].
Condit [6] gave an inclusive description of fig varieties in 1955, reporting more than 600 named fruit-producing varieties, but only a few were comprehensively described. For the majority, it was impossible to identify the cultivated variety or cultivar. Based on a Condit’s early work [7], the International Plant Genetic Resources Institute (IPGRI) supplied an official descriptors list for Ficus carica L. accessions or cultivars [8], allowing the scientific communities to carry out characterization and identification work using the standardized method. Studies on fig germplasm characterization have been carried out by different authors using morphological traits [9,10,11,12,13], and their combination with chemical compounds [14,15], or with gene marker-based approaches [16,17,18,19].
Despite the excellent discrimination of DNA-based markers [18], their use could be expensive in time and economic resources and, in some circumstances, could also be difficult to access. The use of morphological plant traits has been suggested as a simple and inexpensive method for the first screening of genetic resources [15] or to integrate the genetic analysis because some DNA-based markers are not suitable for clone identifications (see Ref. [20] and literature cited therein). Taking all these together, additional (low-cost and fast) methods for varieties discrimination would be desirable.
In the last few decades, measurements of leaf traits (i.e., length, width of leaf parts, the distance between biologically homologous points, angles, and ratio) have evolved from manual to digital acquisition technologies, such as photocopiers, digital cameras, and image analysis software [21]. The measurement of morphological plant traits in combination with multivariate statistical analysis is named ‘multivariate morphometrics analysis’ [22]. Multivariate morphometrics analysis was used to discriminate among cultivars of fig [11,15,16,19], mulberry [23] grapevine [20,24] apple [25], and other species, making the multivariate morphometric approach an essential step for inventory and conservation [26].
To the best of our knowledge, morphometric characterizations have not been adequately implemented in Southern Italy on fig genotypes [17]. Therefore, this study aimed (i) to characterize fig accessions sampled in Basilicata district through multivariate morphometric analysis sensu [22]; (ii) to discriminate among synonymousness and homonymy of sampled fig accessions.

2. Materials and Methods

2.1. Plant Material

Cultivated fig trees located in various districts of Basilicata region (Figure 1) were selected with the support of local biodiversity associations who also provided the local denomination of figs. The six districts were located from the Ionian sea coast to Basilicata’s hilly and internal areas (Figure 1). The climate of these municipalities ranged from a hot summer temperate climate (Bernalda, Nova Siri, and Tursi) to a warm summer temperate climate (Chiaromonte, San Mauro Forte and Tolve) [27]. In particular, the long-term average (1989–2021) of the Ionian coast districts shows 568.6 mm of annual rainfall, 22.0 °C of annual average maximum temperature, with July and August being the hottest months of the year (around 33 °C) and 10.8 °C the annual average minimum temperature, with January being the coolest month of the year (average monthly temperature 3.44 °C). The hilly and internal districts have a higher average annual rainfall (801.0 mm) and lower maximum and minimum temperatures (average annual maximum and minimum temperatures, respectively, of 19.1 and 9.2 °C).
Figure 1. Distribution of the studied fig local varieties according to the elevation of the sampling site and municipality. Note that bold font indicates that the same name of a local variety was found in different municipalities. In grouped local varieties, the average elevation was used; for details, see Table S1.
A skin ground color was assigned according to point 7.4.26 of the freely accessible IPGRI fig descriptors list [8]. For the subsequent statistical analysis, each accession was labeled as reported in Table 1.
Table 1. Site, local variety name, accession code, skin color and shape of the base of the leaf.

2.2. Leaf Sampling and Image Acquisition

The sampling unit consisted of a medium-length shoot (10–20 cm) with 8–10 leaves per shoot. On each tree, 20–25 sampling units were selected at eye level in the outer part of the crown. Starting from the base of the shoot, the fourth or the fifth mature, healthy and sunny leaf was collected for each sampling unit in the second half of July—the beginning of August 2018.
Leaves including petiole were detached from the shoots, labeled, and pressed between newspaper sheets for about 2–3 days. Thereafter, the abaxial leaf surface was pictured, along with a ruler as metric reference, using a NIKON D5100 camera equipped with an AF-P Nikkor 18–55 mm 1:3.5–5.6 G lens.

2.3. Image Analysis

Ten images (=10 leaves) per accession were used to manually configure, in 2D, 17 well-defined and morphologically relevant landmarks (LM), starting from the basal end of petiole (LM 0) to the leaf lamina–petiole junction point (LM 1), and the tip of the central vein (LM 2). Other landmarks (LM 3–LM 16) were placed on the left and right sides of the lamina margin (Figure 2A).
Figure 2. Visual maps of landmarks configuration and leaf lamina measurements used for morphometric analysis and in Ficus carica L. accessions. (a) Paired points measured separately from left and right side of the leaf and averaged.
After scaling the images from pixels to the international M.K.S. unit system, landmarks were digitized using the multi-point tool [28,29]. Landmarks were converted to 2D Cartesian coordinates of each leaf, and data were stored using the ROY manager tool of ImageJ. Leaf angles were also measured using the angle tool of ImageJ. The petiolar sinus angle (SP) was defined as the angle between the left and right lines obtained by joining the LM 1 with LM 3 and LM 16, respectively (Figure 2D). Other angles are defined in Table 2 and shown in Figure 2D.
Table 2. Leaf measurements used for morphometric analysis of the accessions of Ficus carica L.
After digitizing the landmarks and the angles measurements, the leaf was segmented, the lamina and petiole were separated with the pencil tool, then the area and perimeter of the leaf lamina were automatically measured.
Cartesian coordinates of each LM were used to calculate the length of the elements reported in Table 2 and visually depicted in Figure 2B,C.

2.4. Leaf Size Measurements

Leaf size was characterized by measuring all distances reported in Table 2. These measurements include also the descriptors listed in the IPGRI guidelines for fig leaves [8].
Cartesian coordinates of each LM were used to calculate the length of most of the elements reported in Table 2 and are visually depicted in Figure 2B,C.
Fig leaves, like many other plant species, show a symmetric pattern along the middle axis [30,31]. Structures (i.e., petiole, main vein, and central lobe length) positioned along this axis and landmark (LM 0, LM 1, LM 2) are defined as “unpaired”, while all other are “paired” [32]. The distance between the jth and ith landmarks was obtained from the following equation:
D ( x i y i , x j y j ) = ( x j x i ) 2 + ( y j y i ) 2
where x and y are the coordinates of the jth and ith landmark. For paired LM, the distances measured on the left (landmarks 3:9) and right (landmarks 16:10) side of the lamina were averaged (Figure 2A), i.e.,
D ¯ = D l e f t + D r i g h t 2
where D ¯ is the average of the two distances calculated on the left ( D l e f t ) and right ( D r i g h t ) side of the lamina.
The sum of the first-order veins (mid or central vein—MVL, and upper—UVL, and lower lateral veins—LVL) was used to calculate the total length of the first-order veins (TVL), and then the relative vein density (VD) was calculated from the ratio between the TVL and LLA [33]:
TVL = MVL + 2 UVL + 2 LVL                         [ mm ]
VD = 10 TVL LLA                                           [ cm   cm 2 ]
the circularity parameter was calculated as described in [28,29], i.e.,
CRC = 4 π ( LLA ) LLP 2
As suggested by the IPGRI descriptors list, the degree of leaf lobation was measured by the ratio between the length of the central lobe to the length of the leaf (CLL/LLL). Another estimation of lamina incision was made by the ratio between leaf area to leaf perimeter (LLA/LLP, mm). Moreover, the CLL/CLW and LLL/LLW ratios were also calculated.

2.5. Morphometric Data Analysis

Each leaf trait was expressed as the mean of 10 measurements performed on 10 leaf per accession and statistically analyzed using PAST 4.11 [34]. One-way ANOVA was performed for TVL, MVL, UVL, LLA/LLP, LLL, LLW, CLW and PUS variables after the check for normality of data distribution (Shapiro–Wilk test) and homogeneity of variance (Levené’s test) (followed by Tukey’s pairwise post-hoc tests for means separation. For all other traits analysis of variance was carried out by the non-parametric Kruskal–Wallis test followed by Dunn’s post hoc multiple comparison test. Regression analysis was performed on all leaves using linear models for LLP vs. TVL and DP vs. SP, while non-linear models were using for LLP vs. LLA and LLA vs. VD. Lower and upper limits for 95% confidence intervals were calculated using the default bootstrap function available in PAST 4.11 statistical software.
Multivariate relationships, among accessions, were calculated by a principal component analysis (PCA) procedure on a variance-covariance matrix of the 24 morphological descriptors reported in Table 2. The LLA variable was not included in the multivariate analysis because has a different unit of measurements compared to other variables [35]. Since multivariate analysis is scale sensitive, before analysis all variables were standardized to zero mean per unit of standard deviation, according with the equation
z = x x ¯ S D
where z is the standardised value, x is the specific value for which the standardised value is calculated, x ¯ and S D are, respectively, the mean and the standard deviation of the given variable. The analysis of differences in leaf traits among accessions was carried by a linear discriminant analysis (LDA).
The accessions were grouped based on the skin color in (i) dark skin (all accession with black, brown, and purple-green fruit skin) and (ii) green skin (all accessions with green or yellow-green skin) and the LDA applied separately in each group. The supervised LDA was also employed for accession classification purpose of the sampled leaves and the accuracy of classification was measured per each group as the ratio between the number of “correct classification” and the total number of leaves under classification (i.e., 10).

3. Results

A total of 30 putatively different local varieties were found across the 6 sites of the Basilicata district; 13 had fruit dark skin color, and 17 had fruit green skin color (Table 1). There were five local varieties named ‘Troiana/o’ (one with dark skin), three named ‘Nostrana’ or ‘Nostrale’ (one with dark skin), three ‘Dottato/a’, two ‘Natalino’ (both with dark skin), and two ‘Justa’. ‘Troiana’ was found in four sites with different elevation (Figure 1). As for the ‘Troiana’, other names were present in at least two sites: ‘Dottato’ or ‘Dottato bianco’ (Bernalda and San Mauro Forte); ‘Natalino’ (Bernalda and Tursi); and ‘Justa’ (Chiaromonte and Tursi). To all these local varieties, a unique accession code was assigned and used in the text.
The morphometric traits of the leaves showed a significant variability among the accessions. For example, PSD, SP, and LLA showed the highest coefficients of variation, respectively, of 52.8%, 42,3%, and 33.4%. LLL/LLW and CLL/LLL showed the lowest coefficients of variation, of 7.5% and 9.2% (the coefficient of variation for the remaining variables was not shown).
In Basilicata, 16 accessions had a cordate base of the leaf, nine decurrent, three truncate, and two had a calcarate base.
The PSD was higher in the leaf with calcarate and cordate bases concerning the leaf with decurrent or truncate bases (Table 1 and Table 3). BRNTRNB0, BRFVLTT0, and BRXNTRFR, the first two with calcarate base and the last one with cordate base, showed values of PSD significantly higher than those other leaves (Table 3). On the other hand, the SP was higher in the leaf with a truncate or decurrent base with respect to the other (Table 3).
Table 3. Leaf traits of fig accessions characterized in six municipalities of Basilicata District (a).
The relationship between PSD and SP was statistically significant, with a coefficient of determination (R2) of 0.42 (Figure 3A). As expected, the accessions BRXNTRFR, BRNTRNB0, and BRFVLTT0 are in the lower and right part of the graph (high PSD and lower SP), while, among others, SMSCNTNB, BRDNSTRL, and SMSDTTTB are in the higher and left part of the graph (low PSD and high SP).
Figure 3. Linear regressions between (A) PSD versus SP; (B) LLP versus LLA; (C) LLP versus TVL, and (D) LLA versus VD. The regression lines are calculated on 300 leaves of Ficus carica L. accessions.
The size of the leaves is mainly described by the length, width, surface, and perimeter. The leaf area (LLA) varies from 38,869.51 mm2 to 9249.23 mm2. In particular, there were four accessions with a leaf area higher than 30,000 mm2 and seven with a leaf area lower than 20,000 mm2 (Table 3). The leaf perimeter depends not only on the leaf length and width, but also on the number of lobes and the degree of the incision. The accessions reported in this study typically had three lobes, but there were some accessions with five lobes and different degrees of incision of the different lobes. The location effects can be appreciated by comparing the value of LLA reported in Table 3 with that obtained from the multiplication of LLL by leaf width LLW. Among the accessions, when the leaf area was not statistically different, the number of lobes and the degree of incision made for statistically different results in the perimeter of the leaf (Table 3). It is interesting to note that eight accessions had average perimeter values greater than 1 m. There were significant relationships between LLP and LLA and between LLP and the TVL of the leaf (Figure 3B,C). When the perimeter increases, the leaf area, and total veins length increase.
In Figure 3D is reported the regression between the LLA and VD. The power type relationship between LLA and VD had a high coefficient of determination (R2 = 0.91) and showed that small leaves had about 27% more veins per unit of leaf area than big leaves.
The PCA performed on the entire data set (300 leaves) showed that only part of the accessions was separated in different clusters. For example, in the space formed by PC1 and PC2, BRFVLTT0 partially overlapped BRNFCZNN, which was clustered in different groups when compared to TRPNTLNN, TLNAGSTR, BRXDTTT0, and BRDNSTRN (Figure 4). In Figure S1A, BRNTRNB0 was separated by other varieties. PC1 vs. PC3 and PC1 vs. PC4 did not show any other cluster among varieties (Figure S1A,B), while PC2 vs. PC3 showed that SMSCNTNB and SMSTRNN0 were well-separated from all other accessions (Figure S1C).
Figure 4. First two components of PCA analysis scores of 300 leaves of Ficus carica L. accessions.
The cumulated variance of the first, second, third, and fourth PCs account for 83.67% of the total variance (45.04%, 20.15%, 10.63%, and 8.08%, respectively, for PC1, PC2, PC3, and PC4) (Table 4). In Table 4, the loadings values above 0.20 or less than −0.20 are reported in bold. PC1 correlates positively with the size traits of leaves as, among others: LLP, LLL, LLW, and others. PC1 negatively correlates with vein density (VD). PC2 has an eigenvalue of 5.04, and proceeding from negative to positive loadings values correlates with CLL/LLL, CLW/CLL, LVL, and other traits related to MVL, UVL, LVL, PLS, CRC, and LLA/LLP (Table 4). PC3 and PC4 have eigenvalues of 2.66 and 2.02, respectively. PC3 showed loadings, above 0.20 or under −0.20, with traits mainly related to the shape of the base of the leaves, such for example PLS, PL, PUS, PSD, and SP (Table 4). PC4 correlates with the angle between the central vein and upper veins and LLL/LLW (Table 4).
Table 4. Loadings of the principal component axes from PCA of figs leaf accessions. For each PC, the eigenvalue and their contribution to total variance are reported. Loadings higher than 0.20 or lower than −0.20 are in bold.
The correctness of LDA-based classification reached 92.31% and 91.18% for dark and green fruit skin, respectively (Table 5 and Table 6). On a total of 30 fig accessions investigated, 7 with dark fruit skin and 10 with green fruit skin were all correctly classified (100%) (Table 5). In dark fruit skin, the accessions BRNFCZZN had the lowest percentage of correct classification (60%), one leaf was classified as BRDNSTRN, two leaves were classified as TLNAGSTR and another as TRPNTLNN.
Table 5. Given groups and percentage of correct classification using Linear Discriminant Analysis of fig accessions with dark skin.
Table 6. Given groups and percentage of correct classification using linear discriminant analysis of fig accessions with green skin.
In green fruit skin, six leaves of SMSDTTTB from San Mauro Forte, and seven leaves of TRVFRN00 and TLVJST00 from Tursi, were correctly classified to the given groups (Table 6). For example, two leaves of SMSDTTTB were classified as TRVJUST00 and two as NVTNSTRN.
In Figure 5 and Figure S2A (axis one vs. axis three), S2B (axis one vs. axis four), and S2C (axis two vs. axis three), the accessions SMSTRNN0, BRFVLTT0, BRXNTRFR, TRPNTLNN, SMSAGSTN, were well-separated from other groups that showed some overlap.
Figure 5. First two component of the linear discriminant analysis, scores 130 leaves of Ficus carica L. of the accessions with dark skin fruit.
Additionally, accessions with green fruit skin showed a reasonable separation and a certain degree of overlap for some accessions (Figure 6 and Figure S3A–C). In this set of accessions, the name ‘Troiana/o’ is present in four accessions (BRNTRNB0, CHIFCTRN, NVPTRNBN, SMSTRNB0) located at different altitudes. Three local varieties had the name ‘Dottato’ and were from Bernalda (BRNDTTT0, BRXDTTT0), and San Mauro Forte (SMSDTTTB). The name of ‘Justa’ was reported for two local varieties of two different sites, Chiaromonte (CHIJST00) and Tursi (TRVJST00).
Figure 6. Linear discriminant analysis scores 170 leaves of Ficus carica L. of the accessions with green skin fruit.
LDA discriminated the local varieties named ‘Troiana/o’ indicating that the four accessions could be synonymous (i.e., four different genotypes with the same name) (Figure 7A). The LDA showed that the two local varieties of ‘Dottato’ from Bernalda (BRNDTTT0, BRXDTTT0), growing in the same environment, could be synonymous, while accessions SMSDTTTB from San Mauro Forte could be homonymous (i.e., same accessions called with different name) of the accession TRVJST00 from Tursi (Figure 7B).
Figure 7. Linear discriminant analysis applied on selected synonymous of accessions figs. (A) Scores of BRNTRNB0, CHIFCTRN, NVPTRNBN, and SMSTRNB0 accessions. (B) BRNDTTT0, BRXDTTT0, SMSDTTTB, CHJST00, and TRVJST00.

4. Discussions

This study shows that the use of leaf morphometry aided by image analysis might help accessions classification. The LDA performed on the measured leaf traits extracted through imaging had an accuracy higher than 90% in both black and green skin. For BRNDTTT0, BRXDTTT0 with the same name (e.g., ‘Dottato’) sampled at similar sites (Bernalda) the LDA highlighted that they were morphometrically different, suggesting a putative genetic divergence (Figure 7A). On the contrary, the TRVJST00 (‘Justa’ of Tursi) shared the same LDA space of SMSDTTTB (‘Dottato Bianco’ of San Mauro Forte), suggesting that the genetic component is more relevant than environmental one.
Some of the local names (Troiana/o, Dottata/o, San Pietro, Gentile, Ficazzana/o, and Columbro or Columbraro) used in Basilicata have already been reported in the literature since 1583 [6]. However, the descriptions reported by [7,8] do not provide sufficient details to unravel the classification of the local varieties examined in the present study. Because the LDA maximizes the between-groups differences, while the within-group are minimized [34], it was possible to discriminate among accessions (Figure 7A,B).
Leaf morphological traits may be influenced by genetics, development, and biotic or abiotic factors [36]. For example, the leaf venation length and distribution and lamina leaf area may represent the response to water availability, light exposure, and other environmental factors [37]. Moreover, viruses or fungal infections may cause leaf deformation [24]. Thus, it is mandatory to consider biotic and abiotic conditions when comparing inter-individual variation of leaf morphological traits of different accessions, choosing appropriate experimental units. Size is also a critical morphological and physiological trait of the leaf because it determines the photosynthetic and the transpiration capacity of the leaf (= exchange of CO2, H2O and O2) [38,39]. The size of the leaf is influenced by genetic and environmental factors (and their interaction) [36], such as temperature [40], soil fertility [41], water availability [42], and solar radiation [39]. Moreover, some size-related traits have been used to differentiate species and varieties [20,21,24,30]. Remarkably, the IPGRI fig descriptor list [8] recommends using LLL, LLW, CLL, PD, LLA, and PL to estimate leaf size.
The average values of LLL, LLW, and PL of the Basilicata accessions were similar to the figs accessions or local varieties characterized by [11,14,16,43] in India, Iran, Brazil, and Tunisia, respectively.
According to [31,44] the relationship between leaf area and leaf perimeter seems to be independent of environmental stress, even if environmental factors can be responsible for a change in leaf shape [45]. The accessions reported in this paper have shown a determination coefficient between LLP and LLA of (R2 = 0.82) suggesting that these two parameters may reliably be used to characterize fig germplasm. To the best of our knowledge, the relationships between perimeter versus leaf area have not been explored. Further investigation is required to understand if the relationship between leaf perimeter and area can be correlated to environmental constraints.
Leaf veins provide physical support for leaf lamina and provide an efficient transport system to supply water and assimilate to nourish photosynthesis and transpiration [37]. In dicotyledons, the vein system has a hierarchical organization, the first three-order veins form the major veins system, and the higher order of veins forms the minor veins system. The length of the veins per unit of leaf area is defined as vein density [33,37]. It has been reported [33,37,46] that high major vein density may improve leaf functions, including leaf hydraulic conductance and photosynthesis and tolerance to drought.
Fig leaves have multiple first-order veins, the accessions reported in this work have a wide range of first-order veins length (TVL ranged from about 300 to 900 mm) and a first-order vein density (VD) of ≈0.55 cm cm−2 in small leaves of TRPNTLNN and TLNAGSTR, while big leaves of BRXDTTT0, BRFVLTTO and BRNFCZNN have a significantly lower value of VD (≈0.15 cm cm−2) (Figure 3D). The values measured in figs of these accessions were higher than values reported by [33] for different species. Fig VD should be further investigated, including other major veins (2nd- and 3rd-order) and minor veins system, to understand if accessions with high vein density are more resistant to more stressful environmental conditions.
In Ficus carica L., the aspect of the base of the leaf is one of the primary descriptors of the leaf shape [7] and was also one primary source of variation observed by [16], which compared different Persian varieties of fig, most of them with a calcarate or cordate leaf base.
The importance of this region to differentiate among varieties is well-known in figs [6,7] and grapevine [47,48] and recently used by [49] in morphometric analysis of different Vitis specie. In this paper, the base of the leaf was described by measuring the petiolar sinus angle (SP) and the petiole sinus depth (PLS) (Figure 3D).
The principal component analysis performed on all data sets suggests that the genetic structure is the principal source of variance. PC1 has high loadings for all traits related to leaf size and vein density, according to classical morphometric studies [35,50]. The PC2 has high loadings with leaf lobations traits, and PC3 and PC4 with traits related to leaf width (PUS and UVL) and the shape of the leaf base (Figure 5). When measured, the same leaf traits were also found in PCs of different fig accessions of Iran [12,13,16], Tunisia [11], Libya and Egypt [51], Morocco [13,15], in Mulberry genotypes [23], and in grapevine [52].
As highlighted by Chitwood and coauthors [52], leaf shape differences due to genetic and environmental factors are largely independent and additive, giving the opportunity to identify leaves arising from different varieties or, on the other hand, to recognize the effects of the environmental factor on leaf development (see for example [52,53]).
Using linear discriminant analysis (LDA) on traditional morphometric leaf traits correctly classifies more than 90% of the leaves. In our data set, there were the same accessions collected in different sites with a similar name, such as ‘Nostrana nera’, ‘Nostrana’ or ‘Nostrale bianca’, ‘Justa’, ‘Natalino’, ‘Dottato’ or ‘Dottato bianco’, and ‘Troiana bianca’, ‘Troiano bianco’, ‘Troiano nero’ and ‘Troiana’.
In some cases, the name is adjectivized with the fruit skin color, ‘nera’ or ‘nero’ (black), and ‘bianca’ or ‘bianco’ (white). The presence of the adjective is important to discriminate among varieties, but in our data set, there were four ‘Troiana/o’ and three ‘Dottato’ with similar fruit skin color. LDA identified the group of ‘Troiana’ (BRNTRNB0, CHIFCTRN, NVPTRNBN, and SMSTRNB0), the two ‘Dottato’ of Bernalda (BRNDTTT0, BRXDTTT0) and the two ‘Justa’ (CHIJST00, TRVJST00) as synonymous (Figure 7A,B), and SMSDTTTB homonymous of TRVJUST00.
In the group of accessions with dark skin fruit, genetic differences in size and shape among BRRNTLN0 and BRDNSTRN from Bernalda, and TRPNTLNN from Tursi may be masked by environmental factors (Figure 5 and Figure S2A–C).
The application of analytical methods able to separate shape from size may solve some uncertainties intrinsic to multivariate morphometric analysis [54]. Ultimately, the morphological traits measured and analyzed in this study were effective in identifying some fig genotypes and, as proposed in other studies [11,12,13,15,16,23,51,54], may help in identification and first evaluation of fig germplasm.

5. Conclusions

The analysis of morphological traits, even if they may be affected by environmental conditions and management practices, effectively supported characterization and group separation of the accessions. This study hypothesized that some easy-to-recognize and measurable leaf morphological traits could help to discriminate among fig accessions in in situ conditions. The sampling unit and the leaf morphological traits selected, combined with multivariate data analysis procedures, supported the identification of some accessions solving for homonymies and synonyms. This may be especially important for implementing biodiversity conservation programs based on an ex situ core collection or optimizing the sample size to be analyzed by, for example, molecular markers.
Finally, this study proposes using digital image and open-source image analysis software as accurate, simple, and time-saving procedures for extracting many leaf morphological traits.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/su142315970/s1, Figure S1: Principal components scores of 300 leaves of Ficus carica L. accessions (A) PC1 versus PC3; (B) PC1 versus PC4; and (C) PC2 versus PC3; Figure S2: Linear discriminant analysis, scores 130 leaves of Ficus carica L. of the accessions with dark skin fruit (A) PC1 versus PC3; (B) PC1 versus PC4; and (C) PC2 versus PC3; Figure S3: Linear discriminant analysis, scores 170 leaves of Ficus carica L. of the accessions with green skin fruit. (A) Ax1 versus Ax3; (B) Ax1 versus Ax4, and (C) Ax2 versus Ax3; Table S1: Site, accession name and geographical origin of the genotype under investigation.

Author Contributions

Conceptualization and methodology, V.N., G.M.; Data curation, A.G.; Formal analysis, V.N., G.M.; Funding acquisition, V.N.; Supervision, G.M.; Validation, A.G., G.M.; Visualization, V.N.; Writing—original draft, V.N., A.G., G.M.; Writing—review and editing, V.N., G.M. All authors have read and agreed to the published version of the manuscript.

Funding

This research was partially funded by: (i) Regione Basilicata Administration under the “Rural Development Programme” (RDP) 2014–2020—Project “Frutti di Casa”. Measure 10, Sub measure 10.2, Operation 1 “Programme for the conservation and the valorization of the genetic resources in agriculture” (CUP C16C18000210008) (ii) PON “RICERCA E INNOVAZIONE” 2014–2020 Project RESO “Sistemi di coltivazione resilienti, valutazione di impatto delle produzioni frutticole”, AGRIFOOD (CUP B34I200000320005).

Institutional Review Board Statement

Not applicable.

Data Availability Statement

The data presented in this study are available on request from the corresponding author. The data are not publicly available due to privacy restrictions.

Acknowledgments

The authors are grateful to all the growers who kindly donated plant genetic material and the local Associations: ‘Associazione S.E.I. sul Sinni’ from Nova Siri; Musei, Tradizioni Territorio from San Mauro Forte; Cooperativa Agricoltura 2000 di Tolve; Az. Antonio Introcaso di Chiaromonte; for supporting tree localization and accessions’ name attribution.

Conflicts of Interest

The authors declare no conflict of interest.

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