First Isolation, Molecular Identification, and Phylogenetic Characterization of A3B5 Very Virulent Infectious Bursal Disease Virus in Pullets in Chile
Abstract
:1. Introduction
2. Materials and Methods
2.1. Examination and Sampling of the Pullets
2.2. Viral Isolation and Propagation in Specific Pathogen-Free Embryonated Chicken Eggs (SPF-ECE)
2.3. Reverse Transcription Polymerase Chain Reaction (RT-PCR)
2.4. VP1 and VP2 Sequence Analysis and Phylogenetic Analysis
3. Results
3.1. Examination of the Pullets
3.2. Viral Isolation
3.3. Identification of the IBDV
3.4. Phylogenetic Analysis of VP1 and VP2
3.5. Nucleotide Sequence Analysis of Segments A and B
3.6. Amino Acid Sequence Analysis for Segments A and B
3.7. Analysis of VP2 Hypervariable Region (hvVP2)
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Segment | Gen | Primer | Sequence (5′ to 3′) | PCR Product (bp) | Reference |
---|---|---|---|---|---|
A | VP2 | U3 | TGTAAAACGACGGCCAGTGCATGCGGTATGTGAGGCTTGGTGAC | 604 | [39] |
L3 | CAGGAAACAGCTATGACCGAATTCGATCCTGTTGCCACTCTTTC | ||||
B | VP1 | +290 | TGTAAAACGACGGCCAGTGAATTCAGATTCTGCAGCCACGGTCTCT | 642 | [40] |
−861 | CAGGAAACAGCTATGACCCTGCAGTTGATGACTTGAGGTTGATTTTG |
Segment | Gene | Accession Number | % Identity | Accession Number | Country | Year |
---|---|---|---|---|---|---|
A | VP2 | PP824544 | 95.31% | JN982259 | Brazil | 2013 |
95.31% | JF811919 | Brazil | 2016 | |||
95.31% | DQ286035 | Brazil | 2008 | |||
B | VP1 | PP824543 | 97.64% | JN982250 | Brazil | 2013 |
97.30% | JN982249 | Brazil | 2013 | |||
97.13% | DQ679811 | USA | 2008 |
A0 | A1 | A2 | A3 | A4 | A5 | A6 | A7 | A8 | A9 | CL1 | CL2 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
A0 | 0.0674 | 0.0779 | 0.0714 | 0.0715 | 0.0769 | 0.0733 | 0.0719 | 0.0641 | 0.0778 | 0.0701 | 0.0717 | |
A1 | 0.4360 | 0.0254 | 0.0210 | 0.0243 | 0.0284 | 0.0270 | 0.0267 | 0.0339 | 0.0279 | 0.0124 | 0.0206 | |
A2 | 0.4924 | 0.1110 | 0.0281 | 0.0315 | 0.0281 | 0.0331 | 0.0346 | 0.0373 | 0.0232 | 0.0283 | 0.0282 | |
A3 | 0.4679 | 0.0794 | 0.1157 | 0.0299 | 0.0332 | 0.0261 | 0.0298 | 0.0307 | 0.0325 | 0.0252 | 0.0035 | |
A4 | 0.4708 | 0.0957 | 0.1324 | 0.1207 | 0.0333 | 0.0329 | 0.0300 | 0.0358 | 0.0329 | 0.0268 | 0.0299 | |
A5 | 0.4993 | 0.1106 | 0.1021 | 0.1314 | 0.1307 | 0.0338 | 0.0388 | 0.0409 | 0.0278 | 0.0305 | 0.0329 | |
A6 | 0.4535 | 0.1115 | 0.1396 | 0.1004 | 0.1388 | 0.1308 | 0.0325 | 0.0335 | 0.0347 | 0.0299 | 0.0265 | |
A7 | 0.4769 | 0.1130 | 0.1601 | 0.1223 | 0.1220 | 0.1695 | 0.1347 | 0.0321 | 0.0379 | 0.0288 | 0.0300 | |
A8 | 0.3857 | 0.1569 | 0.1767 | 0.1340 | 0.1538 | 0.1875 | 0.1381 | 0.1366 | 0.0405 | 0.0366 | 0.0311 | |
A9 | 0.4906 | 0.1071 | 0.0708 | 0.1238 | 0.1210 | 0.0872 | 0.1368 | 0.1610 | 0.1823 | 0.0311 | 0.0321 | |
CL1 | 0.4479 | 0.0481 | 0.1150 | 0.0921 | 0.1009 | 0.1133 | 0.1146 | 0.1202 | 0.1620 | 0.1146 | 0.0252 | |
CL2 | 0.4643 | 0.0716 | 0.1078 | 0.0102 | 0.1153 | 0.1249 | 0.0968 | 0.1169 | 0.1297 | 0.1153 | 0.0860 |
B1 | B2 | B3 | B4 | B5 | CL2 | CL1 | |
---|---|---|---|---|---|---|---|
B1 | 0.0220 | 0.0199 | 0.0199 | 0.0244 | 0.0267 | 0.0075 | |
B2 | 0.1273 | 0.0221 | 0.0238 | 0.0231 | 0.0244 | 0.0227 | |
B3 | 0.1241 | 0.1361 | 0.0165 | 0.0271 | 0.0295 | 0.0205 | |
B4 | 0.1310 | 0.1492 | 0.1036 | 0.0249 | 0.0287 | 0.0204 | |
B5 | 0.1484 | 0.1385 | 0.1633 | 0.1498 | 0.0090 | 0.0249 | |
CL2 | 0.1625 | 0.1466 | 0.1804 | 0.1699 | 0.0365 | 0.0272 | |
CL1 | 0.0470 | 0.1305 | 0.1320 | 0.1369 | 0.1540 | 0.1642 |
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Cádiz, L.; Guzmán, M.; Rivera, P.; Navarrete, F.; Torres, P.; Hidalgo, H. First Isolation, Molecular Identification, and Phylogenetic Characterization of A3B5 Very Virulent Infectious Bursal Disease Virus in Pullets in Chile. Microbiol. Res. 2025, 16, 31. https://doi.org/10.3390/microbiolres16020031
Cádiz L, Guzmán M, Rivera P, Navarrete F, Torres P, Hidalgo H. First Isolation, Molecular Identification, and Phylogenetic Characterization of A3B5 Very Virulent Infectious Bursal Disease Virus in Pullets in Chile. Microbiology Research. 2025; 16(2):31. https://doi.org/10.3390/microbiolres16020031
Chicago/Turabian StyleCádiz, Leandro, Miguel Guzmán, Paola Rivera, Fernando Navarrete, Paulina Torres, and Héctor Hidalgo. 2025. "First Isolation, Molecular Identification, and Phylogenetic Characterization of A3B5 Very Virulent Infectious Bursal Disease Virus in Pullets in Chile" Microbiology Research 16, no. 2: 31. https://doi.org/10.3390/microbiolres16020031
APA StyleCádiz, L., Guzmán, M., Rivera, P., Navarrete, F., Torres, P., & Hidalgo, H. (2025). First Isolation, Molecular Identification, and Phylogenetic Characterization of A3B5 Very Virulent Infectious Bursal Disease Virus in Pullets in Chile. Microbiology Research, 16(2), 31. https://doi.org/10.3390/microbiolres16020031