The Therapeutic Potential of Phages in Multi-Drug Resistance Infections and Future Directions
Abstract
1. Introduction
2. Methods
2.1. Phage Taxonomy and Life Cycle Strategies
2.2. Antimicrobial Mechanisms of Phages: From Host Recognition to Bacterial Lysis
2.3. Synergistic Dynamics Between Phages and Antibiotics
3. Results
3.1. Key Findings from Preclinical Research Models
3.2. Clinical Evidence for MDR Infections
4. Current Challenges and Translational Barriers
5. Discussion
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AMR | Antimicrobial resistance |
| MDR | Multidrug-resistant |
| XDR | Extensively drug-resistant |
| PDR | Pandrug-resistant |
| CRE | Carbapenem-resistant Enterobacterales |
| MRSA | Methicillin-resistant Staphylococcus aureus |
| CRAB | Carbapenem-resistant Acinetobacter baumannii |
| dsDNA | Double-stranded DNA |
| ssDNA | Single-stranded DNA |
| dsRNA | Double-stranded RNA |
| ssRNA | Single-stranded RNA |
| RBPs | Receptor-binding proteins |
| R–M | Restriction–modification |
| PAS | Phage–antibiotic synergy |
| PK/PD | Pharmacokinetics and pharmacodynamics |
| GMP | Good Manufacturing Practice |
| PMDA | Pharmaceuticals and Medical Devices Agency |
| COPD | Chronic obstructive pulmonary disease |
| ESBL | Extended-spectrum β-lactamase |
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| Study Population and Infection Type | Study Design | Key Clinical Findings and Outcomes | References |
|---|---|---|---|
| Cystic fibrosis patients with chronic respiratory infections | Compassionate use; repeated nebulized phage therapy | Treatment was well-tolerated (no acute hypersensitivity reactions observed). Limitation: Neutralizing antibodies against the administered phages were detected in a subset of patients, suggesting a potential constraint on sustained efficacy. | [36] |
| Severe, drug-resistant nontuberculous mycobacterial infections | Compassionate-use series; personalized intravenous phage therapy + antibiotics | Clinical improvement rate: 55% (11/20) of cases. The therapy was reported to be well-tolerated. | [37] |
| Refractory infections (broad spectrum) | Five-year experience summary from a single center; personalized phage therapy + antibiotics | Remission or recovery rate: 77.8% of patients. Supports the efficacy trend of this therapy for difficult-to-treat infections. | [38] |
| Refractory infections | Retrospective analysis; individualized phage therapy | 1. In vitro synergy: Observed in the majority of phage-antibiotic combinations. 2. Clinical improvement rate: 58% (7/12) of patients. 3. Overall favorable response rate (clinical improvement + microbiological eradication): 66%. | [11] |
| Refractory Pseudomonas aeruginosa infections (osteomyelitis/device-related) | Compassionate-use study; lytic phage PASA16 + antibiotics | Favorable clinical outcome: 86.6% (13/15) of evaluable cases. Only mild adverse effects were reported. | [39] |
| Evidence Category | Pathogen/Infection Model | Intervention and Study Design | Main Findings | Critical Interpretation/Limitations | Ref. |
|---|---|---|---|---|---|
| Preclinical: in vitro | Methicillin-resistant Staphylococcus aureus (MRSA) | Lytic phage SPB; planktonic and biofilm assays | Phage SPB demonstrated broad lytic activity against the tested MRSA isolates and inhibited planktonic growth and biofilm formation. | Provides evidence of in vitro antibacterial and antibiofilm activity; however, in vitro susceptibility does not establish pharmacological activity or therapeutic efficacy in vivo. | [40] |
| Multidrug-resistant Acinetobacter baumannii | Phage ΦAb1656-2 and phage-derived endolysin LysAb1656-2 | The purified endolysin showed substantial antibacterial activity against MDR A. baumannii and, under the conditions examined, greater activity than the parental phage. | Supports the potential of phage-derived enzymes as antibacterial agents, but enzyme activity in vitro should not be extrapolated directly to therapeutic efficacy because stability, delivery, and pharmacokinetics remain important barriers. | [41] | |
| Multidrug-resistant Escherichia coli | Engineered endolysin derived from phage ΦEcSw | Engineering enhanced the ability of the endolysin to act against Gram-negative E. coli, demonstrating the feasibility of modifying phage enzymes to overcome the outer-membrane barrier. | Represents a proof-of-concept strategy; activity remains dependent on the engineered construct, bacterial strain, and experimental conditions. | [42] | |
| Pseudomonas aeruginosa | Lytic phage ZAM-Pa99; planktonic and biofilm assays | The phage demonstrated lytic activity against a substantial proportion of tested isolates and reduced established biofilms in vitro. | Supports antibiofilm potential but does not address in vivo penetration, immune clearance, or pharmacokinetic constraints. | [28] | |
| MDR Klebsiella pneumoniae | Phage cocktails alone and in combination with colistin or tigecycline | Phage combinations enhanced bacterial suppression, and phage–antibiotic combinations showed improved antibacterial activity under selected experimental conditions. | Synergy was dependent on the phage–antibiotic–strain combination and therefore should not be assumed to be generalizable across isolates or antimicrobial classes. | [29] | |
| Colistin-resistant A. baumannii | Phage selection combined with colistin exposure | Acquisition of phage resistance was associated with alterations in bacterial envelope architecture and, in the examined strain, increased susceptibility to colistin. | Illustrates a potentially exploitable evolutionary trade-off, but the finding was demonstrated in a restricted experimental system and requires validation across genetically diverse clinical isolates. | [34] | |
| Preclinical: animal models | MDR P. aeruginosa sepsis in mice | Lytic phage PaeP_Ls administered in a murine sepsis model | Phage treatment reduced bacterial burden and inflammatory responses and improved survival relative to untreated infected animals. | Demonstrates in vivo activity in an acute infection model; translation to human infection remains uncertain because phage pharmacokinetics, immune interactions, and dosing differ substantially between experimental models and patients. | [43] |
| MRSA experimental pneumonia in rats | Aerosolized and intravenous phage administration | Combined aerosolized and intravenous administration produced greater survival than either phage route alone, with survival reaching approximately 91% in the combined-treatment group. | Supports the importance of delivery route and local phage exposure, but results derive from a controlled experimental pneumonia model and cannot establish comparative clinical efficacy. | [44] | |
| CTX-M-15-producing E. coli ST131 sepsis and meningitis in neonatal rats | Strain-specific lytic bacteriophage | Phage administration improved outcomes in experimental sepsis and meningitis caused by the high-risk ST131 clone. | Provides proof of in vivo efficacy against a clinically important resistant lineage, although the narrow experimental setting and strain specificity limit generalization. | [45] | |
| MDR K. pneumoniae infection model | Phage cocktails combined with antibiotics | In addition to in vitro synergy, selected combinations reduced bacterial burden in an animal infection model. | Supports further investigation of phage–antibiotic combinations, although optimized combinations may need to be established individually for different strains and drugs. | [29] | |
| Clinical evidence: compassionate-use and observational cohorts | Drug-resistant Mycobacterium infections | Personalized phage therapy in 20 patients treated on a compassionate-use basis; intravenous, aerosolized, or combined administration | Favorable clinical or microbiological responses were reported in 11 patients, and no adverse reactions were attributed to phage administration. Neutralizing antibodies developed in several intravenously treated patients and may have contributed to treatment failure in some cases. | One of the larger compassionate-use series, but treatment was individualized and frequently accompanied by antibiotics, surgery, or other interventions. The absence of a control group prevents attribution of clinical improvement specifically to phage therapy. | [37] |
| Diverse persistent or refractory infections treated through the Israeli Phage Therapy Center | Personalized compassionate-use phage treatment; 20 treatment courses in 18 patients | Favorable clinical outcomes were reported in the majority of evaluable patients, although microbiological eradication was less consistent and treatment failures also occurred. | Provides real-world feasibility and safety information, but heterogeneous infections, individualized regimens, concomitant antibiotics, and absence of controls substantially limit efficacy inference. | [38] | |
| Refractory P. aeruginosa infections | PASA16-based personalized phage therapy, generally administered with antibiotics; compassionate-use case series | Favorable outcomes were reported in most treated patients, although treatment failures occurred and minor adverse effects were observed. | The uncontrolled design and concomitant antimicrobial treatment preclude determination of the independent contribution of phage therapy. These findings are therefore best regarded as signals supporting prospective evaluation. | [39] | |
| Selected severe infections, including CRAB pulmonary infection, CRAB/CRKP pulmonary coinfection, and chronic S. aureus prosthetic joint infection | Individualized nebulized, intravenous, and/or locally administered phage regimens | Individual reports described microbiological and/or clinical improvement in otherwise difficult-to-treat infections. | These cases illustrate feasibility and potential therapeutic activity but should not be interpreted as efficacy evidence because of their anecdotal nature, concurrent interventions, individualized treatment, and susceptibility to publication bias. | [47,48,50] | |
| Prospective/interventional clinical studies | S. aureus-positive chronic rhinosinusitis | Intranasal AB-SA01 phage cocktail; open-label, first-in-human phase I study, n = 9 | Intranasal phage administration was generally well tolerated, with no serious treatment-related safety signal. Reduction or eradication of S. aureus was observed in some participants. | The study was primarily designed to assess safety and tolerability. Its small sample size, open-label design, and absence of a control group do not permit conclusions regarding efficacy. | [52] |
| Chronic nonhealing wounds infected with various bacteria | Personalized topical phage preparations; prospective uncontrolled study, n = 20 | Clinical and microbiological improvement was reported following topical phage administration; complete healing by day 21 was documented in 7 patients, while other wounds showed granulation and improvement. | There was no vehicle-only or standard-care comparator; the cohort was small, and not all wounds were followed to complete resolution. Details of formulation and topical application were also limited. Consequently, the study provides a preliminary therapeutic signal but does not establish efficacy. | [53] | |
| Severe S. aureus infections, including infective endocarditis and septic shock | Intravenous AB-SA01 administered adjunctively to optimized antibiotic therapy; single-arm, non-comparative study, n = 13 | Intravenous phage therapy was generally well tolerated, with no adverse reactions attributed to AB-SA01. Clinical improvement was observed in a number of patients. | The primary purpose was assessment of safety and tolerability. All patients received optimized antimicrobial therapy. There was no control arm, and the study was not designed to determine efficacy. Clinical outcomes therefore cannot be attributed independently to phage treatment. | [54] | |
| P. aeruginosa-infected burn wounds | PP1131 phage cocktail versus standard care; randomized, controlled, double-blind phase I/II PhagoBurn trial | Phage treatment was generally tolerated, but reduction in bacterial burden occurred more slowly in the phage group than with standard care. The administered phage preparation had undergone substantial loss of titre, resulting in exposure markedly below the intended dose. | PhagoBurn provides an important counterpoint to uncontrolled favorable reports. It demonstrates both the feasibility and the practical challenges of controlled phage trials, particularly product stability, dose standardization, and manufacturing consistency; it did not demonstrate superiority over standard care. | [56] | |
| Clinical implementation | Diverse refractory or difficult-to-treat bacterial infections | PHAGEinLYON multidisciplinary clinical pathway | A structured pathway was established to coordinate patient selection, phage sourcing, microbiological testing, regulatory processes, administration, and clinical follow-up. | Demonstrates the feasibility of integrating personalized phage access into a hospital framework, but implementation experience should not be interpreted as evidence of therapeutic efficacy. | [55] |
| Evidence synthesis | Difficult-to-treat bacterial infections across multiple pathogens and clinical syndromes | Systematic review of clinical phage-therapy experience | Available clinical reports generally indicated acceptable tolerability and reported favorable outcomes in many patients. | The evidence base was dominated by heterogeneous compassionate-use cases and uncontrolled studies, with substantial variation in phage products, dosing, routes, concomitant antibiotics, and outcome definitions. Consequently, the available literature supports continued clinical investigation but remains insufficient for robust estimates of comparative efficacy. | [46] |
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Zhang, S.; Tao, H.; Zhao, S.; Wei, Y. The Therapeutic Potential of Phages in Multi-Drug Resistance Infections and Future Directions. Viruses 2026, 18, 937. https://doi.org/10.3390/v18090937
Zhang S, Tao H, Zhao S, Wei Y. The Therapeutic Potential of Phages in Multi-Drug Resistance Infections and Future Directions. Viruses. 2026; 18(9):937. https://doi.org/10.3390/v18090937
Chicago/Turabian StyleZhang, Shengting, Huili Tao, Sha Zhao, and Yunlin Wei. 2026. "The Therapeutic Potential of Phages in Multi-Drug Resistance Infections and Future Directions" Viruses 18, no. 9: 937. https://doi.org/10.3390/v18090937
APA StyleZhang, S., Tao, H., Zhao, S., & Wei, Y. (2026). The Therapeutic Potential of Phages in Multi-Drug Resistance Infections and Future Directions. Viruses, 18(9), 937. https://doi.org/10.3390/v18090937
