Genomic Characterization of a Bataï Orthobunyavirus, Previously Classified as Ilesha Virus, from Field-Caught Mosquitoes in Senegal, Bandia 1969
Abstract
:1. Introduction
2. Materials and Methods
2.1. The Virus
2.2. Sequencing
2.3. Genetics Analyses and Phylogeny
3. Results
3.1. Blast
3.2. Genetic Distance
3.3. Phylogeny
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Segment L | Segment M | Segment S | |
---|---|---|---|
Mapped Reads | 23,210 | 17,746 | 1667 |
GC Content | 33.9% | 36.4% | 40.6% |
SNPs | 241 | 148 | 14 |
%id | 96.5% | 96.6% | 98.5% |
Informative Nucleotides | 6870 | 4338 | 927 |
% Genome Called | 100% | 98.5% | 98.1% |
Missing Bases | 0 | 63 | 16 |
Ambiguous Bases | 0 | 0 | 0 |
Reference length | 6870 | 4404 | 945 |
Coverage Depth | 403.9× | 477.5× | 191.7× |
Coverage Breadth | 100% | 99.9% | 100% |
Reference Sequence | JX846603.1-Bataï virus strain UgMP-6830 segment L, complete sequence | DQ436460.1-Bataï virus strain UgMP-6830 segment M polyprotein gene, complete cds | JX846601.1-Bataï virus strain UgMP-6830 segment S, complete sequence |
AR D 9870 | Bataï | UgMP-6830 | Bunv | Ngari | |
---|---|---|---|---|---|
S segment | |||||
AR D 9870 | 1.375 | 0.000 | 3.887 | 3.797 | |
BATAÏ | 3.167 | 1.375 | 3.833 | 3.759 | |
UGMP-6830 | 0.000 | 3.167 | 3.887 | 3.797 | |
BUNV | 16.909 | 17.348 | 16.909 | 0.599 | |
NGARI | 16.267 | 16.767 | 16.267 | 1.170 | |
M segment | |||||
AR D 9870 | 8.539 | 5.073 | 16.775 | 4.313 | |
BATAÏ | 125.667 | 8.151 | 16.128 | 8.384 | |
UGMP-6830 | 25.000 | 117.667 | 16.734 | 5.471 | |
BUNV | 484.909 | 486.159 | 485.273 | 16.751 | |
NGARI | 30.733 | 131.533 | 42.467 | 492.103 | |
L segment | |||||
AR D 9870 | 11.491 | 7.586 | 20.035 | 20.040 | |
BATAÏ | 221.000 | 11.907 | 19.265 | 19.324 | |
UGMP-6830 | 59.000 | 233.250 | 19.934 | 19.856 | |
BUNV | 609.636 | 611.689 | 610.727 | 6.607 | |
NGARI | 608.667 | 614.711 | 608.333 | 91.867 |
Bataï_Africa | Bataï_Asia | Bataï_Europe | |
---|---|---|---|
S segment | |||
Bataï_Africa | 1.030 | 2.001 | |
Bataï_Asia | 1.250 | 2.285 | |
Bataï_Europe | 4.143 | 5.393 | |
M segment | |||
Bataï_Africa | 8.587 | 11.173 | |
Bataï_Asia | 103.375 | 10.986 | |
Bataï_Europe | 144.214 | 148.679 | |
L segment | |||
Bataï_Africa | 11.046 | 14.762 | |
Bataï_Asia | 173.750 | 14.726 | |
Bataï_Europe | 275.571 | 290.536 |
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Toure, C.T.; Dieng, I.; Sankhe, S.; Kane, M.; Dia, M.; Mhamadi, M.; Ndiaye, M.; Faye, O.; Sall, A.A.; Diagne, M.M.; et al. Genomic Characterization of a Bataï Orthobunyavirus, Previously Classified as Ilesha Virus, from Field-Caught Mosquitoes in Senegal, Bandia 1969. Viruses 2024, 16, 261. https://doi.org/10.3390/v16020261
Toure CT, Dieng I, Sankhe S, Kane M, Dia M, Mhamadi M, Ndiaye M, Faye O, Sall AA, Diagne MM, et al. Genomic Characterization of a Bataï Orthobunyavirus, Previously Classified as Ilesha Virus, from Field-Caught Mosquitoes in Senegal, Bandia 1969. Viruses. 2024; 16(2):261. https://doi.org/10.3390/v16020261
Chicago/Turabian StyleToure, Cheikh Talibouya, Idrissa Dieng, Safietou Sankhe, Mouhamed Kane, Moussa Dia, Moufid Mhamadi, Mignane Ndiaye, Ousmane Faye, Amadou Alpha Sall, Moussa Moise Diagne, and et al. 2024. "Genomic Characterization of a Bataï Orthobunyavirus, Previously Classified as Ilesha Virus, from Field-Caught Mosquitoes in Senegal, Bandia 1969" Viruses 16, no. 2: 261. https://doi.org/10.3390/v16020261
APA StyleToure, C. T., Dieng, I., Sankhe, S., Kane, M., Dia, M., Mhamadi, M., Ndiaye, M., Faye, O., Sall, A. A., Diagne, M. M., & Faye, O. (2024). Genomic Characterization of a Bataï Orthobunyavirus, Previously Classified as Ilesha Virus, from Field-Caught Mosquitoes in Senegal, Bandia 1969. Viruses, 16(2), 261. https://doi.org/10.3390/v16020261