Porcine Circovirus 3 Detection in Aborted Fetuses and Stillborn Piglets from Swine Reproductive Failure Cases
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Description: Figure S1: Phylogenetic analysis of PCV-3 ORF2 nt sequences from this study, and the PCV-3 references sequences from Franzo et al. [29]. The Maximum Likelihood tree was constructed with Hasegawa–Kishino–Yano model with Gamma distribution (lowest BIC score) at 1,000 replicates. The width of the branches is proportional to the bootstrap values, and the scale bar indicates nucleotide substitutions per site. The six sequences obtained herein are colored in red; sequences classified as PCV-3a are in the blue shadow and the sequences of a tentative PCV-3b in orange shadow. Figure S2: PCV-3 phylogenetic analysis tree of aa of CAP protein from sequences from this study, and the PCV-3 references sequences from Franzo et al. [29]. The Maximum Likelihood tree was constructed with Jones–Taylor–Thornton’s model with Gamma distribution (lowest BIC score) at 1,000 replicates. The width of the branches is proportional to bootstrap values, and the scale bar indicates nucleotide substitutions per site. The six sequences obtained herein are colored in red; sequences classified as PCV-3a are in the blue shadow and the sequences of a tentative PCV-3b in orange shadow. Table S1: Number of fetuses or stillborn piglets, range of crown-to-rump length (CRL) and RT-qPCR or qPCR results obtained in those cases positive at least for one virus. Table S2: Table of SNPs of sequences retrieved in this study compared to the PCV-3 reference of NCBI (NC031753). The genomic position are displayed in 5’-3’ except for the non-synonymous SNPs from Cap gene (displayed 3’-5 ’).
Saporiti, V.; Valls, L.; Maldonado, J.; Perez, M.; Correa-Fiz, F.; Segalés, J.; Sibila, M. Porcine Circovirus 3 Detection in Aborted Fetuses and Stillborn Piglets from Swine Reproductive Failure Cases. Viruses 2021, 13, 264. https://doi.org/10.3390/v13020264
Saporiti V, Valls L, Maldonado J, Perez M, Correa-Fiz F, Segalés J, Sibila M. Porcine Circovirus 3 Detection in Aborted Fetuses and Stillborn Piglets from Swine Reproductive Failure Cases. Viruses. 2021; 13(2):264. https://doi.org/10.3390/v13020264
Chicago/Turabian StyleSaporiti, Viviane, Laura Valls, Jaime Maldonado, Mónica Perez, Florencia Correa-Fiz, Joaquim Segalés, and Marina Sibila. 2021. "Porcine Circovirus 3 Detection in Aborted Fetuses and Stillborn Piglets from Swine Reproductive Failure Cases" Viruses 13, no. 2: 264. https://doi.org/10.3390/v13020264


