Risk Association of TOX3 and MMP7 Gene Polymorphisms with Sporadic Breast Cancer in Mexican Women
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Design and Population
2.2. Primer Design and Restriction Enzymes Selection
2.3. Genomic DNA Isolation and Genotyping
2.4. Statistical Analysis
3. Results
3.1. Clinical and Demographic Characteristics
3.2. PCR-RFLP Assays
3.3. Genotyping and Allelic Distributions in BC Cases and Controls
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Gene/SNP | Localization (NT Position) * | Alleles (WT/Var) | Primer Design | RE | Recognition site (5′- 3′) ** | WT Amplicon | |
---|---|---|---|---|---|---|---|
NT Sequence | Amplicon (bp) | ||||||
TOX3/ rs3803662 | Chr 16 (52552429) | C/T | F -5′ AGTCCTTGGCTGTTCTGTG 3′ | 465 | Bpu10I | CCTNAGC | 298,167 |
R -5′ GTCCAGACAGTCTTCAGCAG 3′ | |||||||
MMP7/ rs1943779 | Chr 11 (102536460) | C/T | F -5′ CTGTGCTTCAAAAACACTGC 3′ | 514 | HpyCH4IV | ACGT | 328,184 |
R -5′ TTTCTGTGGGTTGTCTTTCAC 3′ |
Characteristics | Cases n (%) n = 212 | Controls n (%) n = 212 | p-Value |
---|---|---|---|
Age (media ± SD) | 54.22 ± 12.06 | 52.10 ± 28.95 | 0.327 * |
Body Mass Index <30 >30 | |||
115 (54.2%) | 155 (73.1%) | >0.001 | |
97 (45.8%) | 57 (26.9%) | ||
Menarche (media ± SD) | 12.72 ± 1.54 * | 12.78 ± 1.45 | 0.708 * |
Oral contraceptives Consumers Non-consumers | |||
54 (25.5%) | 52 (24.5%) | 0.911 | |
158 (74.5%) | 160 (75.5%) | ||
Hormonal Replace Therapy Consumers Non-consumers | |||
18 (8.5%) | 17 (8.0%) | 0.862 | |
193 (91.5%) | 195 (92.0%) | ||
Age at the first child (media ± SD) | 22.13 ± 5.04 | 22.26 ± 5.03 | 0.796 |
Menopause | |||
Pre-menopause | 74 (34.9%) | 133 (62.7%) | >0.001 |
Post-menopause | 138 (65.1%) | 79 (37.3%) | |
Smoking | |||
Smokers | 34 (16.1%) | 44 (21.3%) | 0.209 |
Non-smokers | 177 (83.9%) | 163 (78.7%) | |
Alcohol | |||
Yes | 15 (7.1%) | 29 (14.0%) | 0.025 |
No | 196 (92.9%) | 178 (86.0%) |
IHC Status | ER (%) | PR (%) | HER2 (%) |
---|---|---|---|
Positive | 147 (69.3%) | 145 (68.4%) | 53 (25.0%) |
Negative | 65 (30.7%) | 67 (31.6%) | 159 (75.0%) |
SNP | Genotype | Cases n (%) n = 212 | Controls (%) n = 212 | p-Value | OR | 95% CI |
---|---|---|---|---|---|---|
TOX3 rs3803662 (C > T) | CC | 46 (21.7) | 69 (32.5) | 0.034 | 1 | Reference |
CT | 122 (57.5) | 110 (51.9) | 1.164 | 1.057–2.618 | ||
TT | 44 (20.8) | 33 (15.6) | 2.000 | 1.114–3.592 | ||
X2 | 4.84 | 0.9961 | ||||
p-value HWE | 0.0278 | 0.3118 | ||||
Allele | ||||||
C | 214 (50.5) | 248 (58.5) | 0.011 | 1 | Reference | |
T | 210 (49.5) | 176 (41.5) | 1.38 | 1.054–1.813 | ||
MMP7 rs1943779 (C > T) | CC | 20 (9.4) | 40 (18.8) | 0.006 | 1 | Reference |
CT | 70 (33.0) | 71 (33.5) | 2.165 | 1.119–4.190 | ||
TT | 122 (57.5) | 101 (47.6) | 2.703 | 1.442–5.067 | ||
X2 | 3.779 | 14.922 | ||||
p-value HWE | 0.0956 | 0.0003 | ||||
Allele | ||||||
C | 110 (26) | 151 (35.6) | 0.002 | 1 | Reference | |
T | 314 (74) | 273 (64.3) | 1.527 | 1.138–2.824 |
IHC Status | Allele | TOX3 rs3803662 | MMP7 rs1943779 | ||||||
---|---|---|---|---|---|---|---|---|---|
CT/TT vs. CC | CT/TT vs. CC | ||||||||
Positive n (%) | Negative n (%) | OR | 95% CI | Positive n (%) | Negative n (%) | OR | 95% CI | ||
ER | C | 35 (79.5) | 9 (20.5) | 1 | 10 (58.8) | 7 (41.2) | 1 | ||
T | 112 (66.7) | 56 (33.3) | 1.944 | 0.874–4.326 | 137 (70.3) | 58 (29.7) | 0.605 | 0.220–1.666 | |
PR | C | 36 (81.8) | 8 (18.2) | 1 | 9 (52.9) | 8 (47.1) | 1 | ||
T | 109 (64.9) | 59 (35.1) | 2.436 | 1.063–5.580 | 136 (69.7) | 59 (30.3) | 0.488 | 0.180–1.327 | |
HER2 | C | 8 (18.2) | 36 (81.8) | 1 | 4 (23.5) | 13 (76.5) | 1 | ||
T | 45 (26.8) | 123 (73.2) | 0.607 | 0.263–1.405 | 49 (25.1) | 146 (74.9) | 0.917 | 0.286–2.943 | |
TNBC | C | 4 (9.09) | 40 (90.9) | 1 | 7 (41.17) | 10 (58.8) | 1 | ||
T | 47 (27.97) | 121 (72.02) | 3.884 | 1.317–11.456 | 151 (77.43) | 44 (22.5) | 0.416 | 0.150–1.157 | |
Metastasis | C | 35 (79.5) | 9 (20.4) | 1 | 4 (23.5) | 13 (76.4) | 1 | ||
T | 132 (78.5) | 36 (21.4) | 1.061 | 0.467–2.408 | 41 (21.02) | 154 (78.9) | 0.865 | 0.268–2.795 |
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Solis-Coronado, O.; Villarreal-Vela, M.P.; Rodríguez-Gutiérrez, H.F.; González-Guerrero, J.F.; Cerda-Flores, R.M.; Alcorta-Núñez, F.; Camarillo-Cárdenas, K.P.; Pérez-Ibave, D.C.; Vidal-Gutiérrez, O.; Ramírez-Correa, G.A.; et al. Risk Association of TOX3 and MMP7 Gene Polymorphisms with Sporadic Breast Cancer in Mexican Women. Curr. Oncol. 2022, 29, 1008-1017. https://doi.org/10.3390/curroncol29020086
Solis-Coronado O, Villarreal-Vela MP, Rodríguez-Gutiérrez HF, González-Guerrero JF, Cerda-Flores RM, Alcorta-Núñez F, Camarillo-Cárdenas KP, Pérez-Ibave DC, Vidal-Gutiérrez O, Ramírez-Correa GA, et al. Risk Association of TOX3 and MMP7 Gene Polymorphisms with Sporadic Breast Cancer in Mexican Women. Current Oncology. 2022; 29(2):1008-1017. https://doi.org/10.3390/curroncol29020086
Chicago/Turabian StyleSolis-Coronado, Orlando, Mónica Patricia Villarreal-Vela, Hazyadee Frecia Rodríguez-Gutiérrez, Juan Francisco González-Guerrero, Ricardo M. Cerda-Flores, Fernando Alcorta-Núñez, Karen Paola Camarillo-Cárdenas, Diana Cristina Pérez-Ibave, Oscar Vidal-Gutiérrez, Genaro A. Ramírez-Correa, and et al. 2022. "Risk Association of TOX3 and MMP7 Gene Polymorphisms with Sporadic Breast Cancer in Mexican Women" Current Oncology 29, no. 2: 1008-1017. https://doi.org/10.3390/curroncol29020086
APA StyleSolis-Coronado, O., Villarreal-Vela, M. P., Rodríguez-Gutiérrez, H. F., González-Guerrero, J. F., Cerda-Flores, R. M., Alcorta-Núñez, F., Camarillo-Cárdenas, K. P., Pérez-Ibave, D. C., Vidal-Gutiérrez, O., Ramírez-Correa, G. A., & Garza-Rodríguez, M. L. (2022). Risk Association of TOX3 and MMP7 Gene Polymorphisms with Sporadic Breast Cancer in Mexican Women. Current Oncology, 29(2), 1008-1017. https://doi.org/10.3390/curroncol29020086