Identification of Novel Anti-Inflammatory Peptides from Jellyfish Nemopilema nomurai Enzymatic Hydrolysate: An Integrated In Silico Analysis and Cellular Evaluation
Abstract
1. Introduction
2. Results
2.1. JP-FC Showed No Apparent Cytotoxicity Toward RAW264.7 Cells
2.2. JP-FC Attenuated LPS-Induced Inflammatory Responses in RAW264.7 Cells
2.3. GO and KEGG Enrichment Analysis of Precursor Proteins Identified from Peptide Sequences
2.4. Multi-Step Bioinformatic Screening Identified Three Candidate Anti-Inflammatory Peptides
2.5. Molecular Docking Suggested Stable Interactions Between Candidate Peptides and the TLR4/MD-2/LPS Complex
2.6. Synthetic Candidate Peptides Exhibited Good Cytocompatibility in RAW264.7 Cells
2.7. Candidate Peptides Attenuated LPS-Induced Inflammatory Responses in RAW264.7 Cells
3. Discussion
3.1. Molecular Weight and Potential Target Engagement
3.2. Contributions of Residue Composition and Local Interactions
4. Materials and Methods
4.1. Materials
4.2. Preparation of JP-FC
4.3. Cell Culture
4.4. Cell Viability
4.5. LPS-Induced Inflammatory Model and JP-FC Treatment
4.6. Determination of NO Production
4.7. Determination of TNF-α and IL-1β
4.8. LC-MS/MS Analysis
4.9. In Silico Analysis of Anti-Inflammatory Peptides in JP-FC
4.10. Molecular Docking of Potential Anti-Inflammatory Peptides Identified from JP-FC
4.11. Synthesis of Peptides
4.12. Cell Viability of Synthetic Peptides
4.13. Evaluation of Anti-Inflammatory Activity of Synthetic Peptides
4.14. Statistical Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Conflicts of Interest
References
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| Sequence | DGIPGMPG | PGFHVPPP | GPKGYPGP |
|---|---|---|---|
| Mass (Da) | 742.84 | 847.09 | 771.86 |
| Isoelectric point (pI) | 5.7 | 8.32 | 9.79 |
| Net charge at pH 7.0 | 0 | 0 | +1 |
| Hydrophobicity (kcal/mol) | 9.10 | 9.77 | 13.86 |
| Peptide Ranker | 0.80 | 0.86 | 0.80 |
| ToxinPred | Non-Toxin | Non-Toxin | Non-Toxin |
| CPPpred | 0.11 | 0.08 | 0.12 |
| Anti-inflammatory score | 0.57 | 0.54 | 0.71 |
| Estimated ΔG with 3FXI (kcal/mol) | −8.4 | −8.3 | −8.3 |
| Peptide | Interaction Type | Hydrogen Bonding and Hydrophobic Residues of TLR4/MD-2/LPS Complex |
|---|---|---|
| DGIPGMPG | hydrogen bond | Arg460 |
| hydrophobicity | His458, Ile466, Asn481, Leu434, Phe443, Phe429, Ser416, Thr413, Phe418, Gly389, Phe448, Lys435, Glu439, Ile454 | |
| PGFHVPPP | hydrogen bond | His426, Phe429 |
| hydrophobicity | Asp405, Phe408, Leu476, Ser407, Thr457, Phe467, Gln436, Val461, Met478, Leu452, Lys477, Leu427 | |
| GPKGYPGP | hydrogen bond | Leu476 |
| hydrophobicity | Asn526, Glu474, Asp453, Leu453, Leu427, Cys391, Phe418, Ile412, Cys390, Leu406, Thr413, Val461, Met414, Ile466, Thr457, Thr459, Asn481, Gly480, Leu503, Ser504 |
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Shen, W.; Wang, X.; Li, R.; Liu, S.; Xing, R.; Li, P.; Yu, H. Identification of Novel Anti-Inflammatory Peptides from Jellyfish Nemopilema nomurai Enzymatic Hydrolysate: An Integrated In Silico Analysis and Cellular Evaluation. Mar. Drugs 2026, 24, 192. https://doi.org/10.3390/md24060192
Shen W, Wang X, Li R, Liu S, Xing R, Li P, Yu H. Identification of Novel Anti-Inflammatory Peptides from Jellyfish Nemopilema nomurai Enzymatic Hydrolysate: An Integrated In Silico Analysis and Cellular Evaluation. Marine Drugs. 2026; 24(6):192. https://doi.org/10.3390/md24060192
Chicago/Turabian StyleShen, Wen, Xueqin Wang, Rongfeng Li, Song Liu, Ronge Xing, Pengcheng Li, and Huahua Yu. 2026. "Identification of Novel Anti-Inflammatory Peptides from Jellyfish Nemopilema nomurai Enzymatic Hydrolysate: An Integrated In Silico Analysis and Cellular Evaluation" Marine Drugs 24, no. 6: 192. https://doi.org/10.3390/md24060192
APA StyleShen, W., Wang, X., Li, R., Liu, S., Xing, R., Li, P., & Yu, H. (2026). Identification of Novel Anti-Inflammatory Peptides from Jellyfish Nemopilema nomurai Enzymatic Hydrolysate: An Integrated In Silico Analysis and Cellular Evaluation. Marine Drugs, 24(6), 192. https://doi.org/10.3390/md24060192

