Molecular Analysis of miR-155 and MIR155HG Mutations in Conjunction with TLR4 Variants in Inflammatory Joint Disease
Abstract
1. Introduction
2. Materials and Methods
2.1. Ethical Approval of Research
2.2. Sample Collection
2.3. Extraction of DNA
2.4. MIR155, M155HG and TLR4 Mutation and Genotyping Analysis
2.5. Sample Sequencing
2.6. Bioinformatic Analysis
2.7. Statistical Analysis
3. Results
3.1. Characteristics of the Patients
3.2. Mutation Analysis
3.3. Identification of Novel Variants in miR-155 and TLR4
3.4. Genotype Analysis
3.5. Mutation Summary Retrieval from the Database
3.6. Prediction of Structural Stability for TLR4 D50N Mutation
4. Discussion
5. Limitations
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Participant’s Characteristics | OA Patients n = 50 | Normal Controls n = 50 | p-Value |
|---|---|---|---|
| Age | 49.3 ± 9.0 y | 52.4 ± 8.7 y | 0.070 |
| Sex Male/Female | 31/19 | 16/34 | 0.097 |
| BMI kg/m2 | 25.5 ± 2.23 | 26.5 ± 2.90 | 0.045 |
| Level of Vitamin D ng/mL | 21.0 ± 8.1 | 18.7 ± 8.9 | 0.07 |
| Calcium Level mg/dL | 10.6 ± 11.7 | 10.9 ± 13.1 | 0.397 |
| Previous Bone Fracture Yes/No | 20/30 | 16/34 | 0.29 |
| Gene | Chromosome Position | Mutation | Mutation Genotype | Consequence | Heterozygous/Homozygous | Variants | Variant Percentages (%) | AA Change | External Database |
|---|---|---|---|---|---|---|---|---|---|
| MIR-155HG Exon 3 | 21:26946220 | Substitution | A>AG | non_coding_transcript_exon_variant | Heterozygous | 12264A>AG | 7.1 | non | Current study |
| 21:26946256 | Substitution | T>TC | non_coding_transcript_exon_variant | Heterozygous | 12300T>TC | 7.1 | non | rs780154516 | |
| 21:26946266 | Substitution | G>GA | non_coding_transcript_exon_variant | Heterozygous | 12310G>GA | 7.1 | non | Current study | |
| 21:26946270 | Substitution | T>TA | non_coding_transcript_exon_variant | Heterozygous | 12314A>AT | 7.1 | Non | Current study | |
| 21:26946364 | Substitution | T>TG | non_coding_transcript_exon_variant | Heterozygous | 12408T>TG | 14.3 | Non | Current study | |
| 21:26946390 | Substitution | C>CG | non_coding_transcript_exon_variant | Heterozygous | 12434C>CG | 7.1 | Non | Current study | |
| 21:26946398 | Substitution | T>TC | non_coding_transcript_exon_variant | Heterozygous | 12442T>TC | 57.1 | Non | Current study | |
| 21:26946404 | Substitution | G>GC | non_coding_transcript_exon_variant | Heterozygous | 12448G>GC | 64.3 | Non | Current study | |
| 21:26946427 | Substitution | G>GC | non_coding_transcript_exon_variant | Heterozygous | 12471G>GC | 35.7 | Non | Current study | |
| 21:26946437 | Substitution | T>TA | non_coding_transcript_exon_variant | Heterozygous | 12481T>TA | 64.3 | Non | Current study | |
| 21:26946467 | Substitution | T>TG | non_coding_transcript_exon_variant | Heterozygous | 12511T>TG | 23.1 | Non | Current study | |
| 21:26946470 | Substitution | T>TA | non_coding_transcript_exon_variant | Heterozygous | 12514T>TA | 23.1 | Non | Current study | |
| 21:26946471 | Substitution | C>CG | non_coding_transcript_exon_variant | Heterozygous | 12515C>CG | 7.7 | Non | Current study | |
| 21:26946474 | Substitution | T>TA | non_coding_transcript_exon_variant | Heterozygous | 12518T>TA | 15.4 | Non | Current study | |
| 21:26946479 | Substitution | T>TC | non_coding_transcript_exon_variant | Heterozygous | 12523T>TC | 38.5 | Non | Current study | |
| 21:26946490 | Substitution | T>TG | non_coding_transcript_exon_variant | Heterozygous | 12534T>TG | 20 | Non | Current study |
| Gene | Chromosome Position | Mutation | Mutation Genotype | Consequence | Heterozygous/Homozygous | Variants | Variant Percentages (%) | External Database |
|---|---|---|---|---|---|---|---|---|
| MIR155 | 21:26946314 | Substitution | G>GA | mature_miRAvariant | Heterozygous | 12358G>GA | 7.1 | Current study |
| 21:29646351 | Substitution | T>TC | mature_miRAvariant | Heterozygous | 12395T>TC | 7.1 | Current study |
| Gene | Chromosome Position | Mutation | Mutation Genotype | Consequence | Heterozygous/Homozygous | Variants | Codon | Protein | AA Change | External Database |
|---|---|---|---|---|---|---|---|---|---|---|
| TLR 4 Exon 3 | 9:120470894 | Substitution | C>CA | Synonymous (silent) variant/somatic variant | Heterozygous | 4942 C>CA | CCC/CCA | p. Pro49Pro | non | rs375037549 change to A |
| 9:120470895 | Substitution | G>GA | Missense variant/somatic variant | Heterozygous | 4943 G>GA | GAC/AAC | p.Asp50Asn | Asp → Asn | rs776561489 |
| Gene | Variant Position | Genotype | Frequency (%) |
|---|---|---|---|
| TLR4 Exon 3 | 4942 C>CA | CA | 14.3% |
| CC | 85.7% | ||
| 4943 G>GA | GA | 3.6% | |
| GG | 96.4% | ||
| MIR155 | 12358G>GA | GA | 3.6% |
| GG | 96.4% | ||
| 12395T>TC | TC | 3.6% | |
| TT | 96.4% |
| Variant Position | Genotype | Frequency (%) |
|---|---|---|
| 12264A>AG | AA | 96.4% |
| AG | 3.6% | |
| 12300T>TC | TC | 3.6% |
| TT | 96.4% | |
| 12310G>GA | GA | 3.6% |
| GG | 96.4% | |
| 12314A>AT | AA | 96.4% |
| AT | 3.6% | |
| 12408T>TG | TG | 7.1% |
| TT | 92.9% | |
| 12434C>CG | CC | 96.4% |
| CG | 3.6% | |
| 12442T>TC | TC | 28.6% |
| TT | 71.4% | |
| 12448G>GC | GC | 32.1% |
| GG | 67.9% | |
| 12471G>GC | GC | 17.9% |
| GG | 82.1% | |
| 12481T>TA | TA | 32.1% |
| TT | 67.9% | |
| 12511T>TG | TG | 11.5% |
| TT | 88.5% | |
| 12514T>TA | TA | 11.5% |
| TT | 88.5% | |
| 12515C>CG | CC | 96.2% |
| CG | 3.8% | |
| 12518T>TA | TA | 7.7% |
| TT | 92.3% | |
| 12523T>TC | TC | 19.2% |
| TT | 80.8% | |
| 12534T>TG | TG | 10.0% |
| TT | 90.0% |
| Gene | Total | Missense Variant | Synonymous Variant | Intron Variant | 5_Prime_UTR_Variant | Frame Shift Variant | Stop Gained | 3_Prime_UTR_Variant | In- Frame Dele | Splice Region Variant | Start Lost | Splice Acceptor Variant | In- Frame Insert | Splice Donor Variant | Stop Lost |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TLR4 | 1847 | 1000 | 412 | 195 | 59 | 55 | 47 | 47 | 11 | 10 | 4 | 4 | 1 | 1 | 1 |
| Gene | Total | Non-Coding Transcript Exon Variant | Intron Variant | Splice Region Variant | Splice Acceptor Variant | Splice Donor Variant | Mature miRNA Variant | Non-Coding Transcript Exon Variant |
|---|---|---|---|---|---|---|---|---|
| MIR155 HG | 511 | 412 | 84 | 8 | 5 | 2 | — | — |
| miR-155 | 15 | — | — | — | — | — | 10 | 5 |
| Prediction Method | Output Type | Predicted Delta\Delta G (kcal/mol) | Effect on Stability | Confidence Score |
|---|---|---|---|---|
| SVM & Sequence Information | Quantitative | −0.6504 | Decrease | N/A |
| Support Vector Machine | Qualitative | N/A | Decrease | −1.00 |
| Neural Network | Qualitative | N/A | Decrease | −0.76 |
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Nooh, W.A.; Yashooa, R.K.; Khaleel, A.W.; Hassan, T.S.; Maaruf, S.M.; Salim, S.M.; Al-Farha, A.A.-B.; Mustafa, S.A.; Mohammad, D.K. Molecular Analysis of miR-155 and MIR155HG Mutations in Conjunction with TLR4 Variants in Inflammatory Joint Disease. Curr. Issues Mol. Biol. 2026, 48, 400. https://doi.org/10.3390/cimb48040400
Nooh WA, Yashooa RK, Khaleel AW, Hassan TS, Maaruf SM, Salim SM, Al-Farha AA-B, Mustafa SA, Mohammad DK. Molecular Analysis of miR-155 and MIR155HG Mutations in Conjunction with TLR4 Variants in Inflammatory Joint Disease. Current Issues in Molecular Biology. 2026; 48(4):400. https://doi.org/10.3390/cimb48040400
Chicago/Turabian StyleNooh, Wissam Albeer, Raya Kh. Yashooa, Abdullah W. Khaleel, Treska S. Hassan, Shawnim M. Maaruf, Safa M. Salim, Abd Al-Bar Al-Farha, Suhad A. Mustafa, and Dara K. Mohammad. 2026. "Molecular Analysis of miR-155 and MIR155HG Mutations in Conjunction with TLR4 Variants in Inflammatory Joint Disease" Current Issues in Molecular Biology 48, no. 4: 400. https://doi.org/10.3390/cimb48040400
APA StyleNooh, W. A., Yashooa, R. K., Khaleel, A. W., Hassan, T. S., Maaruf, S. M., Salim, S. M., Al-Farha, A. A.-B., Mustafa, S. A., & Mohammad, D. K. (2026). Molecular Analysis of miR-155 and MIR155HG Mutations in Conjunction with TLR4 Variants in Inflammatory Joint Disease. Current Issues in Molecular Biology, 48(4), 400. https://doi.org/10.3390/cimb48040400

