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Article

Synthesis and Biological Evaluation of a Series of New Hybrid Amide Derivatives of Triazole and Thiazolidine-2,4-dione

by
Igor B. Levshin
1,
Alexander Yu. Simonov
1,
Alexey A. Panov
1,*,
Natalia E. Grammatikova
1,
Alexander I. Alexandrov
2,3,
Eslam S. M. O. Ghazy
2,3,4,
Vasiliy A. Ivlev
3,
Michael O. Agaphonov
2,
Alexey B. Mantsyzov
5 and
Vladimir I. Polshakov
5
1
Gause Institute of New Antibiotics, 11 B. Pirogovskaya Street, 119021 Moscow, Russia
2
Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the RAS, 119071 Moscow, Russia
3
Institute of Biochemical Technology and Nanotechnology, Peoples’ Friendship University of Russia (RUDN), 6 Miklukho-Maklaya Street, 17198 Moscow, Russia
4
Department of Microbiology, Faculty of Pharmacy, Tanta University, Tanta 31111, Egypt
5
Faculty of Fundamental Medicine, Lomonosov Moscow State University, 27/1 Lomonosovsky Ave., 119991 Moscow, Russia
*
Author to whom correspondence should be addressed.
Pharmaceuticals 2024, 17(6), 723; https://doi.org/10.3390/ph17060723
Submission received: 15 May 2024 / Revised: 28 May 2024 / Accepted: 30 May 2024 / Published: 3 June 2024
(This article belongs to the Section Medicinal Chemistry)

Abstract

:
A series of hybrid compounds with triazole and thiazolidine nuclei connected by a linker has been synthesized and extensively studied. Various synthetic methods for the target compounds have been tested. A microbiological assessment of the obtained compounds was carried out on strains of pathogenic fungi C. albicans, C. non-albicans, multidrug-resistant C. auris, Rhizopus arrhizus, Aspergillus spp. and some dermatophytes and other yeasts. The lowest obtained MIC values for target compounds lie between 0.003 µg/mL and 0.5 µg/mL and therefore the compounds are not inferior or several times better than commercial azole drugs. The length of the acylpiperazine linker has a limited effect on antifungal activity. Some bioisosteric analogues were tested in microbiological analysis, but turned out to be weaker than the leader in activity. The highest activity was demonstrated by a compound with para-chlorobenzylidene substituent in the thiazolidine fragment. Molecular modelling was used to predict binding modes of synthesized molecules and rationalize experimentally observed SAR. The leader compound is twice more effective in inhibiting the formation of germ tubes by Candida albicans yeast cells compared to voriconazole. An increased level of Pdr5, an azoles drug efflux pump was observed, but the increase is lower than that caused by azoles. The results can be useful for further development of more powerful and safe antifungal agents.

1. Introduction

The problems caused by fungal lesions of internal organs have become increasingly widespread and important in recent years. At the end of October 2022, WHO appealed to the medical community because of the critical situation associated with pathogenic fungi due to the insufficiency of existing means of combating them, and the ever-growing resistance to the drugs used, as well as the emergence of new highly dangerous multi-resistant strains of fungi such as Candida auris [1]. The emergence of resistance to antifungal drugs is a global problem that needs to be addressed urgently. The most critical examples are the widespread growth and emergence of antifungal-resistant strains of Candida glabrata and Candida auris fungi and the identification of azole-resistant filamentous fungi Aspergillus spp. In addition, some problems remain with respect to some rarer mold fungi, such as Mucor, Rhizopus, Fusarium, for which there are still no effective and reliable antifungal drugs [2].
The creation of new antifungal drugs is a complex and lengthy process. The similarity of the fungal cell structure to the human one imposes serious limitations in terms of their toxic effect. One of the actively developing directions to overcome this circumstance is the synthesis of hybrid molecules based on triazole with multiple mechanisms of action directed at different targets of the microbial cell [3]. Modification of the triazole pharmacophore group is vital in developing antifungal agents because it offers broad-spectrum effectiveness, potency, minimal toxicity to mammalian cells, aids in managing resistance, favorable drug distribution, adaptable chemical structure, and proven clinical effectiveness against fungal infections [4].
Extension of the triazole pharmacophore group by an additional fragment, either directly or by a linker, is of significant interest. However, as experiments have shown, the obtained results do not always meet expectations and are often unpredictable [5]. In the years after the discovery of fluconazole (I, Figure 1) in 1986, many researchers have attempted to improve the microbiological and pharmacological properties of fluconazole by introducing substituents both into the triazole part of the molecule and by replacing one of the triazole heterocycles with other heterocyclic or aliphatic structures [6,7]. This has resulted in new drugs such as ravuconazole (II), albaconazole (III), izavuconazole (IV), efinaconazole (V), and voriconazole (VI) introduced into healthcare in many countries (Figure 1).
Hybridization of the triazole ring can profoundly influence antifungal activity by enhancing binding affinity to the target, specificity, resistance mitigation, and potency enhancement, ultimately contributing to the development of more effective antifungal therapies. For instance, ravuconazole’s optimized triazole moiety boosts its effectiveness against diverse fungal pathogens, while albaconazole’s structure enhances its specificity to fungal ergosterol, reducing off-target effects. Isavuconazole’s adjustments improve its binding to ergosterol and pharmacokinetics for the treatment of invasive infections. Efinaconazole’s changes heighten its antifungal potency and nail bed penetration, while voriconazole’s modifications widen its activity spectrum against fungal pathogens [3,8,9].
Ergosterol is the main component of the fungal cell membrane that regulates the permeability, fluidity, and integrity of the membrane. Azoles block the synthesis of ergosterol by competitively inhibiting lanosterol 14α-demethylase (CYP51), which is the key enzyme that catalyzes the oxidative removal of the 14α-methyl group of lanosterol to form 14,15-unsaturated intermediates of ergosterol biosynthesis [10,11,12]. Selective inhibition of CYP51 leads to depletion of ergosterol reserves and accumulation of lanosterol. Ultimately, it leads to the inhibition of fungi proliferation. The biological assessment of both the drugs themselves and their analogues conducted in order to detect more effective molecules, is constantly underway and the search for new highly effective molecules is actively continuing all over the world.
In our previous report [13], we showed the topical antifungal action of 3,5-disubstituted thiazolidine-2,4-diones on pathogenic yeast fungi of the Candida spp. and dermatophytes Microsporum canis and Trichophyton mentagrophytes, presumably due to the destructive effect on the cell wall of a fungus. Some of the synthesized compounds exhibited high antifungal activity, both fungistatic and fungicidal, and led to morphological changes in the Candida yeast cell wall.
Several options for attaching a thiazolidine molecule to a triazole pharmacophore group have been described in the literature. Borat and colleagues [14] described the addition of a triazole pharmacophore via the para-alkoxy group of the phenyl of (5-benzylidene)rhodanine (VIIad, Figure 2). However, the resulting compounds failed to show high fungicidal activity. Later, Wu et al. [15] presented hybrids of triazole with thiazolidine-2,4-dione with various arylidene and heteroarylidine substituents (VIII, Figure 2).
The inclusion of cyclic amine linkers into a hybrid structure with a triazole pharmacophore is widely used in the exploratory work of researchers in medical chemistry [15]. A number of compounds recently obtained by Zhu et al. (IX, Xa,b, Figure 3) demonstrated high antifungal activity not only in vitro, but also on animals with disseminated Candida infection [16]. The activity of the molecules largely depended on the substituent adjacent to the carbonyl group of the piperazine amide (Figure 3). The patent [17] describes a hybrid amide styrene derivative Xc (Figure 3), which, in addition to anti-Candida activity, exhibits activity against the “black” fungus of the Zygomycetes genus. This fact is especially important in connection with the recent sharp spike in infection in India in 2021, where the number of infected with the “black” fungus, according to the Ministry of Health of India, exceeded 28 thousand people [18].
The purpose of our work was to study the approaches to the synthesis of new hybrid derivatives of thiazolidine-2,4-dione (TZD) and triazole containing a piperazine-based amide linker (Figure 4). The target 3-substituted derivatives of thiazolidine-4-one were obtained in several different ways, depending on the starting reagents: either from the corresponding carboxylic acid with piperazine-containing triazole fragment (Method A) or from piperazine amide by reaction with oxirane (Method B).
To study the structure–activity relationship, four domains of modifications were identified: (1) substituents in the phenyl core of the benzylidene-TZD part; (2) exocyclic substituent in the thiazolidine core; (3) piperazine amide linker with a different number of methylene units; (4) halogen in the triazole-containing part of the molecule (Figure 4).
Synthesis, physicochemical and biological characteristics of some of the previously obtained hybrids were described by us in previous reports [19,20,21,22]. This paper describes various approaches to the synthesis of triazole/thiazolidine-2,4-diones hybrids and gives a deeper study of the biological properties of the compounds with various substituents in the thiazolidine ring. In addition, some thio-substituted thiazolidine-4-ones and the leader compound, formerly reported as L-173 (Figure 5), were studied. The docking of amide hybrids was carried out and the key pharmacophoric features were described. The results obtained for L-173 were compared with the previously described compound L-310, which contains no linker between the fragments [15] (Figure 5). Since a number of compounds had high antifungal activity and were effective against fluconazole-resistant clinical isolates, we reproduced para-chloro substituted L-310 and 2,4-dichloro substituted L-163 for analysis and comparison of microbiological activity. It has been previously found by molecular docking studies that these molecules interact with CACYP51 mainly through hydrogen bonding and hydrophobic interactions.
Microbiological evaluation of all the obtained derivatives of thiazolidine and triazole was carried out on strains of pathogenic yeast-like fungi Candida albicans, C. non-albicans, C. auris, filamentous fungi Aspergillus spp., dermatophytes T. rubrum, M. canis, and Rhizopus spp.

2. Results and Discussion

To start the synthesis, triazole-containing piperazine derivatives 4a,b were obtained by reaction of Boc-piperazine 2 with either 2,4-difluorophenyl-substituted oxirane 1a (commercially available) or 2,4-dichlorophenyl-substituted oxirane 1b, which have been synthesized before [23,24]. The reaction was carried out by reflux in ethanol with triethylamine. Then, the protecting group was removed by trifluoroacetic acid or hydrogen chloride in ethyl acetate (Scheme 1). For the next steps, the salts of 4a and 4b or their freebases are equally suitable.
Thiazolidine-substituted carboxylic acids 1115 (Scheme 2) and their 5-arylidene derivatives 2022 were obtained from thiazolidine-2,4-dione (5) by reproduction of the methods described in the literature [25,26,27] and presented in the Supporting Information.
The preparation of 5-arylidene derivatives 16ag by Knoevenagel reactions of 5 with aromatic aldehydes was carried out in an acetic acid medium with methylamine as a catalyst [28] (Scheme 2). The alkylation of TZDs was performed by appropriate alkylating agents in THF, acetonitrile, or DMF with potassium carbonate as a base. The temperature regime in the reaction was determined by the reactivity of the alkylating agent: room temperature was suitable for methyl 2-bromo-2-(2,4-dichlorophenyl)acetate, but ethyl bromoacetate required refluxing in DMF. Acid hydrolysis by refluxing in a mixture of acetic and hydrochloric acids led to the corresponding acids 2022.
The target hybrid amides 2430 were synthesized from the carboxylic acids 1116 and piperazines 4a,b. 5-Arylidene-substituted hybrid derivatives were prepared in two ways, depending on the structure of the TZD derivative and the triazole intermediate used. By Method A, the carboxylic acids 1115 were transformed into acyl chlorides by action of thionyl chloride and immediately brought into reaction with N-substituted piperazines 4a,b in CH2Cl2 at room temperature (Scheme 3). Similarly, sulfur-containing analogues 29 and 30 were synthesized from 2-(4-oxo-2-thioxothiazolidin-3-yl)acetic acid (23) and piperazines 4a,b. By the same method, 5-arylidene substituted 20ag, 2122a were converted into piperazinyl-amide derivatives 31ag, 32a, 33ag, 34ag and 35b in good yields (see Table 1). The use of TBTU as a condensation agent resulted in a much lower yield of 32%. Some 3-substituted 5-arylidenthiazolidine-2,4-diones 22a, 22g, 26a were obtained and characterized in previously published work [13,19,25,26,27] (the methods are described in the Supporting Information).
To further confirm the structure of the compound obtained, an alternative synthetic route was carried out from unsubstituted thiazolidine–triazole hybrids 2430 by Knoevenagel reaction with aromatic aldehydes (Method K) under milder conditions: ethanol with piperidine as the catalyst [29]. This method provided compounds 29a, 30a, and 30c, expanding the range of target hybrid compounds.
Condensation of (2,4-dioxothiazolidin-3-yl)-substituted acids 11,15 with Boc-piperazine provided compounds 36, 37 (Scheme 4), and after acidic deprotection, the corresponding piperazines 38, 39 were obtained. Similarly, amide derivatives 4043a were obtained from the corresponding 5-arylidene-substituted (thiazolidine-2,4-dione-3-yl)carboxylic acids 2022 (Scheme 4). The Knoevenagel reaction seems to be suitable for any step of the synthesis: 40a and 43a were obtained from 36 and 37, respectively (iv, Scheme 4) (methods are described in the Supporting Information) [22].
Compound 42a was also prepared from the corresponding 3-carboxylic acid 22a using CDI and Boc-piperazine in methylene chloride at room temperature. The yield in this case was slightly lower than by the acyl chloride method, but remained quite high (the technique is described in the Supporting Information).
Some hybrid derivatives, i.e., 3133,35, were obtained from triazole-containing oxirane 1a and 5-(benzylidene)-3-substituted thiazolidine-2,4-diones 4447 by reflux in toluene with the addition of N-methylpyrrolidone and triethylamine (Method B) (Scheme 5).
To obtain hybrids 50a,c,g with a linker of two methylene units, an entirely different method was used (Method C), consisting of the alkylation of K-salts of 5-arylideneTZDs 48a,c,g by substituted 3-chloro-1-(piperazin-1-yl)propan-1-one 49 in DMF (Scheme 6). The yields of the target products 50a,c,g were significantly lower than by other methods. A summary of the all acylpiperazine hybrids is presented in Table 1.
The structure of the obtained compounds was confirmed by NMR spectroscopy and mass spectrometry. In the 1H and 13C NMR spectra, for all hybrid derivatives containing no arylidene substituent in the TZD ring 2430, characteristic resonances of the triazole ring are observed (chemical shifts of 1H nuclei 8.31 and 7.75 ppm and 13C nuclei 145.4 and 150.9 ppm). For the phenyl group containing two fluorine atoms, 1H aromatic CH signals are observed at 6.99, 7.16, and 7.41 ppm and the corresponding 13C resonances at 110.9, 104.0, and 129.7 ppm. In the 13C spectrum of such substituents, characteristic doublets of doublets for the CF carbon atoms are also observed at ~159 and ~162 ppm. The coupling constants for these signals are ~246 Hz for 1J(CF) and ~12 Hz for 3J(CF). In hybrids without an arylidene substituent, signals of the thiazolidine CH2 group are also observed at 4.20–4.22 ppm for 1H and ~32–36 ppm for 13C resonances. All 5-substituted benzylidene derivatives contain a characteristic resonance of the olefin proton Ar-CH= at 7.93–8.01 ppm for 1H and 131.0–132.0 for 13C. These chemical shift values correspond to the thermodynamically stable Z-isomers [20,21].
The structures of key compounds 31a (L-173)20–23 and L-31016 were unambiguously confirmed by analysis of a series of 2D NMR experiments, including the homonuclear 1H-1H DQF-COSY (Figures S7 and S12 in Supporting Information) and ROESY (Figures S8, S13 and S14 in Supporting Information) experiments, as well as the heteronuclear 13C-1H HSQC experiments (Figures S9 and S15 in Supporting Information) and 13C-1H HMBC (Supplementary Figure S15), performed at the natural abundance of the 13C isotope. Analysis of these 2D spectra allowed us to completely assign the 1H and 13C signals of the compounds L-173 and L-310 (Table 2) and to confirm their structure. Information on the assignment of the signals in the 1H and 13C spectra was further used in the interpretation of the 1D spectra of all other compounds studied.

3. Microbiology

3.1. Characterization of the Compounds’ Biological Activity and SAR

A comparative study of the spectrum of the antifungal action of the new compounds was carried out in vitro by the method of using double micro-dilutions in broth, using standard strains and clinical isolates. For references, standard preparations of Amphotericin B, ketoconazole (Ketoconazole, Sigma-Aldrich, St. Louis, MO, USA) and fluconazole (Fluconazole, Sigma-Aldrich, St. Louis, MO, USA) were used, as well as the control strain of Candida parapsilosis (ATCC 22019). The minimal inhibitory concentration (MIC) was taken as the lowest concentration of sample solutions at which at least 80% growth inhibition was observed. All experiments were repeated three times.
Initially, we tested compounds 3a, 4a, L-310, and L-163, which were described in the literature [15,23]. Hybrid derivatives L-310 and L-163 [15] showed moderate microbiological activity against the tested strains (Table 3). The manifestation of the activity of the Boc-protected 3a on the C. parapsilosis strain was unexpected because of the weak activity of its analog 3b without a Boc group.
3-Substituted derivatives of thiazolidine-4-one 2430 without an arylidene substituent failed to exhibit any antifungal effect. In addition, the introduction of a 4-chlorobenzylidene fragment into the structure did not lead to a noticeable activity. However, in the presence of a 2,4-dichlorophenyl substituent in the amide linker chain, compounds 47a and 47b were noticeably active against C. parapsilosis, reaching a MIC value of 0.25–0.5 µg/mL (Table 4) and had slightly improved activity in dematophyte strains (MIC 8–16 µg/mL). These compounds were studied on fluconazole-resistant clinical isolates of the genus Candida spp. (Table 5).
The hybrid compounds 2430 bearing no arylidene fragment in the thiazolidine ring were inactive against all the strains used (Table 6). When an arylidene substituent is introduced, activity on a wide range of pathogens appears. For reference, fluconazole, itraconazole, and amphotericin B were used.
As follows from Table 6, the activity of the para-chloro-benzylidene derivative 31a (L-173) was the highest on C. parapsilosis, M. canis and T. rubrum (MIC 0.03 µg/mL) and Aspergillus spp. (MIC 1–2 µg/mL). The introduction of a methyl substutuent into the amide linker (32a) slightly reduced activity against Candida and dermatophytes. The same effect was observed upon increasing the length of the methylene chain from C2 (33a) to C3 (34a). Replacement of halogen atoms in the benzylidene residue for a methoxy group (compounds 30c, 31c) sharply reduced the activity of Aspergillis strains without changing the activity against Candida spp. and dermatophytes, which remain high with MIC of 0.03–0.06 µg/mL. Similar results were observed in the sulfur analog (29a) with a para-chlorine benzylidene substituent. On all strains of fungi, the activity of the compound 30a with a dichlorophenyl substituent in the triazole part was slightly lower than the difluorine thio analog 29a and much lower than the leader molecule 31a with an oxygen atom at position 2 of the thiazolidine ring.
An in vitro comparative evaluation of the new compounds against fungal strains of dermatophytes with fluconazole and Amphotericin B as references showed that the main compounds under study are not inferior to widely used commercial preparations in terms of the activity. Only 31a and 31g with halogen substituents in phenyl ring showed the high activity (MIC of 0.015 µg/mL) against M. canis and T. rubrum.
Thus, the compounds have a wide spectrum of antifungal activity, which is promising for use in clinical practice for the treatment of diseases caused by fungal infections. In addition, the activity of most of the compounds against Candida parapsilosis is even superior than that of fluconazole and itraconazole. In addition, the new compounds, unlike Fluconazole, inhibit the growth of dermatophytes M. canis B-200 and T. rubrum 2002 while still being effective against Candida species. A comparative study of close analogues of the selected leader 31a (L-173) was conducted on clinical isolates, including strains resistant to itraconazole and ketoconazole (Table 7). There are advantages of the new compounds in relation to various strains of Candida spp., including the resistant ones (C. albicans 604M and C. albicans 8) or insensitive to modern commercial azole drugs (C. tropicalis 3019, C. glabrata 61L, and C. krusei 432M). In terms of activity against Candida spp., compound 31a showed MIC values close to ketoconazole and itraconazole, and is even better than ketoconazole and itraconazole against resistant strains of C. albicans 604M and C. albicans 8. Since the compounds are hybrids with an additional mechanism of action on a pathogenic cell, the possibility of developing resistance is significantly reduced. In contrast, a constantly growing resistance to fluconazole is recorded. In addition, ketoconazole has significant toxicity, so the new compounds are good competitors.
Compound 31a (L-173) has been tested in the Hans Knöll Institute (HKI) on an expanded range of clinical isolates, including the following types: Candida spp., Aspergillus spp., Fusarium petrolifilum, Lomentospora petrolifilum, Rhizopus arrhizus, and Scedosporium apiospermum (Table 8).
In most cases, compound 31a (L-173) was not inferior in terms of activity to the reference drug Voriconazole. In relation to some of the most problematic strains of fungi Rhizopus arrhizus (MIC 0.25 mg/L) and C. auris (MIC 2 mg/L), the results were even slightly better than Voriconazole (4 and 8 mg/L respectively). The results obtained confirm the prospects for continuing the study of leader molecule 31a (L-173).

3.2. Tests In Vivo

In order to assess the effect of lead compound on the formation of the germinal tube of C. albicans, which is the first stage of the development of tissue-invasive hyphal form found in systemic infection, an experiment on mice was conducted. The inhibitory activity against mycelial outgrowth correlates better with the therapeutic efficacy of drugs against C. albicans, so this test does reflect the degree of antifungal activity in vivo [30]. To compare the efficiency of suppressing the C. albicans cells, germination in the glands of mice by different doses of compound 31a (L-173) and voriconazole, the percentage of yeast cell germination in each of these groups of animals was calculated in relation to control group D (injected with 20% DMSO). Then, the percentage of C. albicans cell germination suppression was calculated as 100% minus percentage of germination (Table 9).
As follows from Table 9, administered at a dose 2.4 times lower than voriconazole (5 mg/kg vs. 12 mg/kg), compound L-173 suppressed the growth tube formation by C. albicans yeast cells more effectively (22.33 against 17.00%). Administered in equal doses (12 mg/kg), the compound was also superior to voriconazole (30.86% vs. 17.00%). With an increase in the dose of compound 31a to 25 mg/kg, a stronger inhibitory effect was also noted (41.04%).

4. Molecular Modeling

Docking studies were conducted to characterize the binding modes of the synthesized triazole-containing compounds in the active site of CYP51. The lead compound 31a (L-173) demonstrated the expected orientation of the triazole core with a hydrogen bond formed between the hydroxyl group of the ligand and the water molecule coordinated by the heme and Y132 (Figure 6A). A thiazolidinedione arm mimicked the extended shape inherent in the 3-phenylpyridine chain of the crystallographic ligand VT1161 (Oteseconazole) and protruded through the substrate access channel toward the solvent-exposed protein surface (Figure 6B). None of the three carbonyl oxygens formed hydrogen bonds with the receptor, resulting in a poor stabilization of the polar 2-(piperazine-1-yl)-2-oxoethylthiazolidine-2,4-dione fragment in the lipophilic environment of the pocket. This effect was manifested as a complete loss of potency by compound 24 lacking benzylidene moiety (Table 6, here and below data for C. parapsilosis ATCC 22019 are interpreted). The benzylidene 4-chlorophenyl ring formed essential hydrophobic interactions with residues A61, Y64, G65, L87, and L88 at the gate to the substrate access channel.
Modifications of the structure accompanied by minor perturbations in the extended shape of the thiazolidinedione arm were tolerated: 32a with the methylated linker and the 2-thio analog 50a retained potency. In contrast, the bulky 2,4-dichlorophenyl group of 35b did not fit within the substrate access channel, rendering the compound inactive. A linker extension by homologation (compounds 50a, 33a, 34a) shifted the position of the benzylidene fragment toward the solvent-exposed region of the binding site, but essential hydrophobic interactions with the gate motif residues were mainly preserved (Figure 6C; Figure S1 in Supporting Information). Compounds with propylene and butylene linkers can pick the second hydrogen bond formed between the thiazolidinedione carbonyl and hydroxyl group of Y64 (Figure 6C; Figure S1). Enthalpic gain from this hydrogen bond can partially compensate for the increased entropic loss occurring upon binding the ligands with longer flexible alkyl chains, and explain comparable potencies of 31a and 33a. Substituents of the benzylidene phenyl ring modulated the interactions with the residues of the gate motif. Bulky substituents were not tolerated; this is presumably due to steric clashes (compounds 31f, 33i,h, 34i,h). para-Chlorophenyl and 2,4-dichlorophenyl were the most versatile options featuring active compounds for all four tested alkyl linkers (compounds 31a, 3334a, and 3334g).
The thiazolidinedione arm of L-310 was shorter than that of 31a due to the lack of N-acetylpiperazine fragment. Consequently, benzylidene moiety was shifted deeper inside the substrate access channel, disrupting hydrophobic interaction with the gate motif residues. The benzylidene(thiazolidine-2,4-dione) moiety of L-310 bioisosterically mimicked 3-phenylpyridine chain of VT1161: the 4-chlorophenyl fragment fitted in the position of the oxyphenyl and thiazolidinedione ring superimposed over the pyridine with carbonyl oxygen matching position of the nitrogen (Figure 6D).
In order to confirm whether the interpretation of the SAR drawn based on the docking in the active site of C. albicans CYP51 SC5314 is valid for CYP51 from C. parapsilosis ATCC 22019, analysis of protein homology was conducted. An alignment of amino acid sequences revealed 75% identity between the enzymes (Figure S2 in Supporting Information). To further investigate the conservation of residues within the active site, a three-dimensional homology model of C. parapsilosis CYP51 was built and compared to the crystallographic structure of CYP51 from C. albicans. Structure-based alignment demonstrated 93% identity of residues within 6 Å around the crystallographic ligand. Three substitutions were revealed: 304 I > V was found next to the heme binding site; 87 L > M and 506 S > T occurred at the entrance to the substrate access channel (Figure S3). These results support that a docking-based interpretation of SAR proposed here for CYP51 from C. albicans SC5314 can be reliably transferred to C. parapsilosis ATCC 22019. The CYP51 gene has not yet been sequenced for strains of A. niger, A. fumigatus, M. canis, and T. rubrum studied in this work. However, as shown in Table 6, the SAR profiles for M. canis and T. rubrum are close to those of C. parapsilosis.

5. Biochemistry

In order to assess whether classic azole compounds, thiazolidine antifungals and the hybrid compounds display distinct responses from fungal cells, we used the SCRAPPY method [31] to compare the previously published data on voriconazole and mycosidine [13] and obtained new data for L-173. The SCRAPPY method involves testing an array of 65 strains of yeast, which produce GFP-fusions of various proteins under the control of their native promoters, thus allowing for the monitoring of how a cell up- or downregulates specific proteins in response to various bioactive compounds. Our previous results showed that mycosidine and the azoles had considerably differing response patterns. Tests at the minimal inhibitory concentration (MIC) and half-MIC show that the response to L-173 is highly similar to the azole drugs. This is noted by a general lack of changes in the levels of numerous proteins, including those that change abundance in response to Mycosidine. Notable similarity to azoles is also observed in the upregulation of Erg3 and Yhb1. Also, we observed an increased level of Pdr5, an azoles drug efflux pump (Figure 7A). Importantly, the increase caused by L-173 is lower than by azoles (Figure 7B), suggesting the possibility that L-173 has lower affinity to the multi-drug efflux system, although this requires additional study.
Importantly, we did not observe the induction of Erg10, which is a hallmark of azole activity. Mycosidine itself decreases the amount of Erg10, thus the hybrid molecule exhibits an intermediate response. Somewhat similarly, L-173 exhibits a less dramatic induction of Hxt3 than the azole compounds, while Mycosidine was previously observed to exhibit a concentration-dependent Hxt3 response. Mycosidine toxicity depended on Hxt3 [13].
While azoles do not affect the abundance of the histone Htb2 (suggesting no effect of the cell cycle), both mycosidine and L-173 decrease the abundance, which involves appearance of a low-fluorescence fraction (Figure 7B). While our quantifications remove dead cells (stained with propidium iodide) from the analysis, some reduction of protein levels in cells that have not been stained yet is also possible. Since both L-173 and mycosidine exhibit noticeable fungicidal effects (Figure 7C), this is the most likely explanation for a fraction of cells with lowered Htb2 fluorescence. Lastly, L-173 exhibits a lack of Hsp104 and Bmh1 induction, which were not observed either for the azoles or mycosidine.

6. Materials and Methods

6.1. Chemistry

All the reagents were obtained commercially and used without further purification. Oxirane 1 and (4-oxo-2-thioxo-3-thiazolidinyl)acetic acid (23) were purchased from Sigma-Aldrich. The purity of the compounds was checked by thin-layer chromatography using silica-gel 60 F254-coated Al plates (Merck, Rahway, NJ, USA) and spots were observed under UV light. 1H NMR and 13C NMR spectra were recorded on a Bruker Avance spectrometer (600 and 150 MHz, respectively, Bruker, Billerica, MA, USA) and Varian VXR-400 spectrometer (Varian, Berkeley, CA, USA) at 400 MHz and 101 MHz, respectively, at 298 K in CDCl3 or DMSO-d6 at a concentration of samples of 5–15 mmol, with TMS as an internal reference for 1H and 13C NMR spectra. The signal assignments of compounds L-310 and 31a (L-173) were performed using 2D spectra (DQF-COSY, 13C–1H HSQC, and 13C–1H HMBC); the chemical shifts are expressed in ppm (δ scale) using DMSO-d6 or CDCl3 as an internal standard; the coupling constants expressed in Hz. The mass-spectral measurements were carried out by the ESI method on micrOTOF-QII (Brucker Daltonics GmbH, Bremen, Germany). Analytical HPLC was performed on a Shimadzu LC-20AD system using Kromasil-100-5-C18 (Akzo-Nobel, Amsterdam, The Netherlands) column, 4.6 × 250 mm, temperature 20 °C, UV detection, mobile phase A—0.2% HCOONH4), mobile phase B-MeCN, (pH 7.4), fl-1ml/min. LC/MS was performed on Agilent 1100 LC/MSD (Agilent Technologies, Santa Clara, CA, USA), MSD Ionization Source: APCI or ESI, detectors: ELSD, SEDEX 85, DAD (UV) 200–400 nm TWC (Total Wave Chromatogram).
3-(2-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)thiazolidine-2,4-dione (24) (Method A1). 2-(2,4-Dioxothiazolidin-3-yl)acetic acid (11) (175 mg, 1.0 mmol) was refluxed in 5 mL of SOCl2 for 2 h, then all volatiles evaporated in vacuo and the residue used without purification. 2-(2,4-Difluorophenyl)-4-(piperazin-1-yl)-3-(1H-1,2,4-triazol-1-yl)propan-2-ol hydrochloride (4a) (300 mg, 0.83 mmol) was suspended in 10 mL of CH2Cl2, then triethylamine (253 mg, 2.50 mmol, 3 equiv) was added. The reaction mixture was cooled in an ice bath and a solution of freshly prepared (see above) 2-(2,4-dioxothiazolidin-3-yl)acetyl chloride (194 mg, 1.0 mmol, 1.2 equiv) in CH2Cl2 was added dropwise. Upon completion of the acyl chloride addition, the pH of the mixture was adjusted to 8 with Et3N if needed. The reaction mixture was allowed to heat to room temperature and stirred overnight. Then it was washed with a saturated solution of citric acid until acidic pH, the organic layer was separated, dried over sodium sulfate and methylene chloride was distilled under vacuum. The resulting residue was redissolved in methylene chloride and the substance was purified by chromatography on silica gel (eluent—methanol:CH2Cl2 1:33). Yield 52%, light brown foam.
(Method A2) In methylene chloride (3 mL), 2-(2,4-dioxothiazolidin-3-yl)acetic acid (11) (0.42 mmol) and 2-(2,4-difluorophenyl)-1-(piperazin-1-yl)-3-(1H-1,2,4-triazol-1-yl)propan-2-ol (4a) hydrochloride (181 mg, 0.50 mmol, 1.2 equiv) were suspended, then triethylamine (169 mg, 1.67 mmol, 4 equiv) was added. The resulting solution was stirred for 30 min, and TBTU (161 mg, 0.50 mmol, 1.2 equiv) was added. pH was then adjusted to 8 with Et3N and the reaction mixture stirred at RT for 16 h. The organic layer was washed with water, dried over Na2SO4 and evaporated on a rotary evaporator. The residue was purified by flash chromatography on silica gel (eluent—ethyl acetate:hexane 3:1) to provide 24. Yield 32%, white foam.
1H NMR (400 MHz, DMSO-d6) δ 8.28 (s, 1H), 7.73 (s, 1H), 7.40 (td, J = 9.4, 9.0, 6.9, 1H), 7.13 (ddt, J = 11.5, 9.1, 2.4, 1H), 6.95 (td, J = 8.6, 2.5, 1H), 5.72 (s, 1H), 4.57 (d, J = 4.0, 2H), 4.33 (s, 1H), 4.26 (s, 1H), 3.98 (s, 1H), 3.46–3.42 (m, 4H + H2O), 2.86 (dd, J = 14.1, 7.2, 1H), 2.72–2.69 (dd, J = 13.9, 10.5, 1H), 2.38 (tp, J = 16.9, 5.3, 3H). 13C NMR (101 MHz, DMSO-d6) δ 172.23, 171.93, 163.37, 150.79, 145.25, 130.17, 111.09 (d, J = 20.6), 104.09 (t, J = 27.0), 75.04, 63.73, 55.94, 54.38, 54.09, 46.02, 44.46, 42.57, 42.11, 34.21, 21.44. LC/MS (ESI): m/z 481.1. Calculated for C20H22F2N6O4S [M + H]+ 481.1.
3-(1-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-1-oxopropan-2-yl)thiazolidin-2,4-dione (25) was obtained as described above from 12 and 4a. Yield 25%, crystalline yellow foam. 1H NMR (400 MHz, DMSO-d6) δ 8.26 (s, 1H), 7.72 (s, 1H), 7.38 (td, J = 8.9, 6.7, 1H), 7.12 (ddd, J = 11.9, 9.1, 2.6, 1H), 6.93 (td, J = 8.5, 2.6, 1H), 5.69 (s, 1H), 4.94 (qd, J = 7.1, 1.8, 1H), 4.55 (s, 2H), 4.21 (d, J = 2.7, 2H), 3.10 (s, 2H), 2.84 (d, J = 13.9, 1H), 2.67 (dd, J = 13.9, 2.1, 1H), 2.34 (s, 4H), 1.44–1.30 (m, 3H). 13C NMR (101 MHz, DMSO-d6) δ 171.95, 171.78, 166.34, 150.80, 145.24, 130.15, 111.09 (d, J = 20.2), 104.10 (t, J = 27.4), 75.10, 63.71, 55.94, 54.29, 49.97, 45.18, 42.41, 33.79, 14.79. LC/MS (ESI): m/z 495.2. Calculated for C21H24F2N6O4S [M + H]+ 495.2.
3-(4-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-4-oxobutyl)thiazolidine-2,4-dione (26) was obtained as described above from 13 and 4a. Yield 69%, yellow foam. 1H NMR (700 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.75 (s, 1H), 7.43–7.39 (m, 1H), 7.18–7.13 (m, 1H), 6.97 (td, J = 8.5, 2.5, 1H), 5.71 (s, 1H), 4.58 (s, 2H), 4.36 (t, J = 5.1, 1H), 4.15–4.12 (m, 2H), 3.49 (t, J = 6.9, 2H), 3.47–3.42 (m, 3H), 3.34–3.29 (m, 2H), 3.24 (t, J = 4.7, 2H), 2.87 (dd, J = 13.9, 0.9, 1H), 2.69 (d, J = 13.9, 1H), 2.51 (dt, J = 3.6, 1.8, 1H), 2.43–2.38 (m, 1H), 2.39–2.33 (m, 2H), 2.25 (t, J = 7.2, 2H), 1.70 (p, J = 7.1, 2H). 13C NMR (176 MHz, DMSO-d6) δ 172.91, 172.55, 169.96, 162.13 (dd, J = 245.7, 12.6), 159.41 (dd, J = 246.9, 12.1), 150.92, 145.37, 130.36–130.13 (m), 126.68–126.39 (m), 111.20 (d, J = 20.3), 104.21 (t, J = 26.9), 75.13 (d, J = 5.3), 63.90, 56.50, 56.06, 56.05, 54.54 (d, J = 38.3), 45.22, 41.45 (d, J = 45.7), 34.36, 29.72, 22.99, 19.01. LC/MS (ESI): m/z 509.2. Calculated for C22H26F2N6O4S [M + H]+ 509.2.
3-(5-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-4-oxopentyl)thiazolidine-2,4-dione (27) was obtained as described above from 14 and 4a. Yield 65%, white foam. 1H NMR (700 MHz, DMSO-d6) δ = 8.31 (s, 1H), 7.75 (s, 1H), 7.44–7.37 (m, 1H), 7.16 (t, J = 9.5, 1H), 7.00–6.94 (m, 1H), 4.58 (s, 2H), 4.19 (d, J = 7.1, 4H), 3.48 (dt, J = 12.6, 6.9, 5H), 2.85 (d, J = 14.0, 1H), 2.68 (d, J = 13.9, 1H), 2.30 (s, 2H), 1.90–1.72 (m, 3H). 13C NMR (176 MHz, DMSO-d6) δ 172.89, 172.87, 172.53, 172.51, 170.56, 162.15 (dd, J = 245.5, 12.7), 159.40 (dd, J = 247.0, 12.0), 150.93, 145.40, 130.26, 126.47, 111.23 (d, J = 20.1), 75.09, 63.84, 56.01, 54.80, 54.45, 41.40, 41.27, 40.30, 40.18, 40.07, 34.33, 34.32, 33.49, 31.98, 27.14, 26.95, 22.33, 22.06. LC/MS (ESI): m/z 523.2. Calculated for C23H28F2N6O4S [M + H]+ 523.2.
3-(1-(2,4-Dichlorophenyl)-2-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)thiazolidine-2,4-dione (28) was obtained from 15 and 4a. Yield 34%, yellow foam. 1H NMR (CDCl3) δ = 8.07 (s, 1H), 7.80 (s, 1H), 7.58–7.39 (m, 2H), 7.31 (m, 1H), 6.84 (m, 2H), 6.38–6.25 (m, 1H), 6.00–5.83 (m, 1H), 4.88 (br, 1H), 4.57 (m, 2H), 4.05–3.88 (m, 2H), 3.80–2.24 (m, 8H). LC/MS (ESI): m/z 625.1. Calculated for C26H24Cl2F2N6O4S [M + H]+ 625.1.
3-(2-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-2-thioxothiazolidin-4-one (29) was obtained as described above from 23 and 4a. Yield 20%, brown foam. 1H NMR (700 MHz, DMSO-d6) δ = 8.30 (s, 1H), 7.75 (s, 1H), 7.41 (s, 1H), 7.16 (s, 1H), 6.97 (s, 1H), 5.76 (s, 1H), 4.78–4.28 (m, 5H), 3.31 (s, 2H), 2.89 (s, 1H), 2.69 (s, 2H), 2.56–2.31 (m, 4H). 13C NMR (176 MHz, DMSO-d6) δ 203.42, 174.39, 162.87, 162.17 (d, J = 246.6), 159.41 (dd, J = 246.9, 11.3), 150.92, 145.38, 130.26, 126.49 (d, J = 12.0), 111.22 (d, J = 20.2), 104.39, 104.23 (t, J = 26.9), 104.08, 75.19, 63.82, 56.02, 54.59, 54.28, 45.39, 44.75, 42.28, 38.71, 36.31. LC/MS (ESI): m/z 497.1. Calculated for C20H22F2N6O3S2 [M + H]+ 497.1.
3-(2-(4-(2-(2,4-Dichlorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-2-thioxothiazolidin-4-one (30) was obtained as described above from 23 and 4b. Yield 28%, light brown foam. 1H NMR (700 MHz, DMSO-d6) δ = 8.32 (s, 2H), 7.86 (s, 1H), 7.75 (s, 2H), 7.68 (dd, J = 15.4, 7.4, 1H), 7.66–7.61 (m, 1H), 7.60–7.49 (m, 5H), 7.33 (s, 3H), 5.85 (s, 2H), 4.89 (d, J = 14.3, 3H), 4.29 (d, J = 4.9, 2H), 3.82–3.68 (m, 5H), 2.96–2.70 (m, 3H), 2.51 (s, 4H), 1.59 (s, 3H), 1.47 (d, J = 3.4, 6H). 13C NMR (176 MHz, DMSO-d6) δ 193.60, 181.20, 167.59, 166.95, 150.99, 145.53, 136.26, 133.03, 132.80, 132.62, 132.22, 131.99, 131.21, 130.24, 130.09, 127.30, 123.29, 54.88, 54.33, 54.12, 48.92, 46.93, 45.65, 44.82, 25.69, 24.41. LC/MS (ESI): m/z 529.1. Calculated for C20H22Cl2N6O3S2 [M + H]+ 529.1.
(Z)-5-(4-Chlorobenzylidene)-3-(2-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl) piperazin-1-yl)-2-oxoethyl)thiazolidine-2,4-dione (31a, L-173)5 was obtained as described above from 22a and 4a. Yield 67%, white crystals.
(Method B) To a solution of (Z)-5-(4-chlorobenzylidene)-3-(2-oxo-2-(piperazin-1-yl)ethyl)thiazolidin-2,4-dione (3.65 g, 10 mmol) in a mixture of PhMe:NMP—20:1 (50 mL), 1-((2-(2,4-difluorophenyl)oxiran-2-yl)methyl)-1H-1,2,4-triazole (2.37 g, 10 mmol) was added, followed by Et3N (5 mL, 38 mmol). The reaction mixture was stirred at 100 °C for 12 h, then cooled to room temperature and evaporated in vacuo. The residue was purified by flash chromatography using an EtOAc:MeOH:Et3N (25:1:0.1) mixture as an eluent. Yield 3.0 g (51%), crystalline powder. M.p. 150.3 °C. 1H NMR (700 MHz, DMSO-d6) δ 8.29 (s, 1H), 7.94 (s, 1H), 7.74 (s, 1H), 7.65 (d, J = 8.0, 2H), 7.57 (d, J = 8.0, 2H), 7.40 (td, J = 8.9, 6.8, 1H), 7.16 (ddd, J = 11.8, 9.1, 2.6, 1H), 6.96 (td, J = 8.4, 2.6, 1H), 5.73 (s, 1H), 4.58 (s, 2H), 4.54 (s, 2H), 3.4–3.25 (m, 4H), 2.88 (dd, J = 13.8, 1.5, 1H), 2.71 (d, J = 13.8, 1H), 2.49–2.40 (m, 3H), 2.40–2.31 (m, 4H). 13C NMR: (151 MHz, DMSO-d6) δ 166.78, 165.15, 162.89, 161.68 (dd, J = 245.9, 12.4), 158.94 (dd, J = 247.0, 12.0), 150.46, 144.90, 135.41, 132.17, 131.79, 131.71, 130.02–129.66 (m), 129.45, 126.03 (dd, J = 13.1, 3.6), 121.70, 110.98–110.49 (m), 103.76 (dd, J = 28.1, 25.7), 74.73 (d, J = 5.5), 63.37 (d, J = 3.6), 55.57 (d, J = 4.9), 54.04, 53.74, 44.18, 42.66, 41.83. HRMS (ESI): Calcd for C27H25ClF2N6O4S [M + H]+ 603.1387. Found: m/z 603.1485.
(Z)-3-(2-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-5-(4-fluorobenzylidene)thiazolidine-2,4-dione (31b) was obtained from 22b and 4a. Yield 72%, white crystals. 1H NMR (400 MHz, DMSO-d6) δ 8.29 (s, 1H), 7.94 (s, 1H), 7.75 (s, 1H), 7.69 (dd, J = 8.7, 5.4, 2H), 7.45–7.30 (m, 3H), 7.14 (ddd, J = 11.8, 9.1, 2.6, 1H), 6.95 (td, J = 8.5, 2.6, 1H), 5.76 (s, 1H), 4.58 (s, 2H), 4.54 (s, 2H), 3.45–3.35 (m, 3H), 3.34–3.23 (m, 3H), 2.88 (d, J = 13.9, 1H), 2.70 (d, J = 13.8, 1H), 2.56–2.33 (m, 5H). 13C NMR (101 MHz, DMSO-d6) δ 167.37, 165.67, 163.49 (d, J = 251.3), 163.34, 162.11 (dd, J = 246.0, 12.7), 159.37 (dd, J = 246.7, 11.9), 150.92, 145.37, 133.17, 133.09, 132.85, 130.23 (t), 129.92 (d, J = 3.2), 126.48 (d, J = 13.0), 121.07 (d, J = 2.4), 117.00 (d, J = 22.0), 111.20 (d, J = 20.7), 104.21 (t, J = 26.8), 75.16 (d, J = 5.5), 62.48, 56.00 (d), 44.60, 43.07, 42.25. LC/MS (ESI): m/z 587.2. Calcd for C27H25F3N6O4S [M + H]+ 587.2.
(Z)-3-(2-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-5-(4-methoxybenzylidene)thiazolidine-2,4-dione (31c) was obtained from 22c and 4a; Yield 61%, bright yellow foam. 1H NMR (400 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.88 (s, 1H), 7.75 (s, 1H), 7.64–7.55 (m, 3H), 7.41 (td, J = 9.0, 6.8, 1H), 7.23–7.05 (m, 4H), 6.96 (td, J = 8.5, 2.7, 1H), 5.77 (s, 1H), 4.58 (s, 2H), 4.51 (d, J = 9.5, 3H), 3.82 (d, J = 2.4, 5H), 3.70 (s, 1H), 3.47–3.22 (m, 6H), 2.89 (d, J = 13.9, 1H), 2.71 (d, J = 13.8, 1H), 2.57–2.30 (m, 7H). 13C NMR (101 MHz, DMSO-d6) δ 167.25, 167.12, 165.38, 162.98, 161.26, 150.46, 144.91, 134.15, 133.44, 132.47, 132.33, 129.98–129.57 (m), 126.35–125.65 (m), 125.29, 117.64, 114.99, 110.75 (d, J = 21.1), 103.76 (t, J = 27.0), 74.71 (d, J = 5.3), 63.34, 55.51, 54.03, 53.73, 52.65, 44.13, 42.52, 42.01, 41.77. LC/MS (ESI): m/z 599.2. Calcd for C28H28F2N6O5S [M + H]+ 599.2.
(Z)-5-(4-Ethylbenzylidene)-3-(2-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)thiazolidine-2,4-dione (31d) was obtained from 22d and 4a. Yield 72%, white crystals. 1H NMR (400 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.90 (s, 1H), 7.75 (s, 1H), 7.54 (d, J = 8.1, 2H), 7.40 (s, 1H), 7.38–7.33 (m, 2H), 7.15 (ddd, J = 11.8, 9.1, 2.6, 1H), 6.96 (td, J = 8.5, 2.6, 1H), 5.76 (s, 1H), 4.58 (s, 2H), 4.53 (s, 2H), 3.36 (d, J = 4.9, 3H), 3.34–3.22 (m, 1H), 2.95–2.83 (m, 1H), 2.71 (d, J = 13.8, 1H), 2.64 (q, J = 7.6, 2H), 2.42 (qd, J = 12.8, 12.3, 6.3, 2H), 1.17 (t, J = 7.6, 3H). 13C NMR (101 MHz, DMSO-d6) δ 167.50, 165.74, 163.35, 160.86 (d, J = 12.3), 160.57 (d, J = 12.2), 158.12 (d, J = 12.3), 150.88, 147.65, 145.32, 133.94, 130.76 (d, J = 4.2), 130.17 (d, J = 8.6), 129.26, 126.45 (d, J = 11.7), 120.17, 111.16 (d, J = 20.4), 104.19 (t, J = 26.8), 75.14 (d, J = 5.4), 63.77, 55.96, 54.46, 54.16, 44.57, 42.99, 42.22, 28.55, 15.59. HRMS (ESI): Calcd for C29H30F2N6O4S [M + H]+ 597.2090. Found: m/z 597.2103.
(Z)-5-(4-Isopropylbenzylidene)-3-(2-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)thiazolidine-2,4-dione (31e) was obtained from 22e and 4a. Yield 65%, white crystals. 1H NMR (400 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.90 (s, 1H), 7.75 (s, 1H), 7.62–7.52 (m, 2H), 7.47–7.38 (m, 3H), 7.16 (ddd, J = 11.8, 9.1, 2.6, 1H), 6.96 (td, J = 8.5, 2.6, 1H), 4.58 (s, 2H), 4.54 (s, 2H), 3.37 (t, J = 5.0, 2H), 3.35–3.21 (m, 2H), 3.00–2.84 (m, 2H), 2.71 (d, J = 13.7, 1H), 2.41 (tt, J = 12.9, 6.7, 4H), 1.20 (d, J = 6.9, 6H). 13C NMR (101 MHz, DMSO-d6) δ 167.51, 165.74, 163.35, 160.85 (d, J = 12.5), 160.63, 158.05, 152.13, 150.88, 145.32, 133.90, 130.86 (d, J = 6.7), 130.16 (d, J = 9.4), 127.84, 126.44 (d, J = 13.7), 120.21, 111.17 (d, J = 20.1), 104.60–103.83 (m), 85.45, 75.12 (d, J = 5.5), 63.76, 55.95, 54.45, 54.15, 44.54, 42.99, 42.19, 33.86, 23.90. HRMS (ESI): Calcd for C30H32F2N6O4S [M + H]+ 611.2247. Found: m/z 612.2445.
(Z)-5-(4-tert-Butylbenzylidene)-3-(2-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)thiazolidine-2,4-dione (31f) was obtained from 22f and 4a. Yield 63%, white crystals. 1H NMR (400 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.91 (s, 1H), 7.75 (s, 1H), 7.57 (d, J = 3.0, 4H), 7.40 (td, J = 9.0, 6.8, 1H), 7.16 (ddd, J = 11.8, 9.1, 2.6, 1H), 6.96 (td, J = 8.5, 2.6, 1H), 5.78 (s, 1H), 4.58 (s, 2H), 4.54 (s, 2H), 3.37 (d, J = 5.2, 2H), 3.34–3.21 (m, 3H), 2.89 (d, J = 13.9, 1H), 2.71 (d, J = 13.8, 1H), 2.42 (tt, J = 12.9, 6.7, 4H), 1.28 (s, 9H). 13C NMR (101 MHz, DMSO-d6) δ 167.51, 165.74, 163.35, 160.85 (d, J = 12.5), 160.51, 158.12 (d, J = 12.0), 154.30, 150.88, 145.33, 133.78, 130.57, 130.22, 126.71, 126.59–126.28 (m), 120.32, 111.17 (d, J = 20.6), 104.19 (t, J = 26.9), 75.14 (d, J = 5.4), 63.78, 55.95, 54.46, 54.15, 44.57, 43.00, 42.21, 35.20, 31.19. HRMS (ESI):Calcd for C31H34F2N6O4S [M + H]+ 625.2403. Found: m/z 625.2295.
(Z)-5-(2,4-Dichlorobenzylidene)-3-(2-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)thiazolidine-2,4-dione (31g) was obtained from 22g and 4a. Yield 58%, white crystals. 1H NMR (400 MHz, DMSO-d6) δ 8.28 (s, J = 4.1, 1H), 7.94 (d, J = 8.3, 2H), 7.83 (s, 1H), 7.74 (s, 1H), 7.60 (s, 2H), 7.40 (dd, J = 15.9, 8.5, 1H), 7.14 (t, J = 9.7, 1H), 6.95 (t, J = 7.4, 1H), 5.73 (s, 1H), 4.57 (s, J = 10.3, 2H), 4.55 (s, 2H), 3.37 (s, 2H), 2.87 (s, 5H), 2.71 (s, 5H), 2.46–2.32 (m, 3H). 13C NMR (101 MHz, DMSO-d6) δ 167.00, 165.22, 163.23, 162.72, 150.90, 145.34, 136.28, 135.86, 130.60, 130.42, 130.34, 130.22, 128.84, 127.91, 125.76, 111.28, 111.07, 104.47, 104.19, 103.95, 75.19, 75.13, 63.77, 59.91, 56.02, 55.96, 54.48, 54.17, 49.97, 44.62, 43.20, 42.43, 42.28, 36.21, 31.20. LC/MS (ESI): m/z 637.1. Calculated for C27H24Cl2F2N6O4S [M + H]+ 637.1.
(Z)-5-(4-Chlorobenzylidene)-3-(1-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazine-1-yl)-1-oxopropan-2-yl)thiazolidine-2,4-dione (32a) was obtained from 23a and 4a. Yield 72%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.26 (s, 1H), 7.92–7.90 (m, 1H), 7.72 (s, 1H), 7.64 (d, J = 8.4, 2H), 7.60 (d, J = 8.3, 2H), 7.37 (q, J = 8.3, 1H), 7.16–7.09 (m, 1H), 6.93 (td, J = 8.4, 2.6, 1H), 5.69 (d, J = 2.5, 1H), 5.19 (qd, J = 7.2, 2.9, 1H), 4.55 (s, 2H), 3.35–3.30 (m, 3H), 3.20 (s, 2H), 2.83 (dd, J = 14.0, 4.9, 1H), 2.67 (dd, J = 14.0, 4.4, 1H), 2.45–2.40 (m, 3H), 2.33 (s, 2H), 2.29 (s, 1H), 1.49 (dd, J = 7.2, 4.0, 3H). 13C NMR (176 MHz, DMSO-d6) δ 166.82, 166.42, 165.46, 162.02 (dd, J = 245.7, 12.5), 159.29 (dd, J = 247.0, 12.0), 150.84, 145.27, 135.75, 132.51, 132.23, 132.18, 130.16, 129.87, 126.36 (d, J = 13.1), 121.62, 111.11 (d, J = 20.5), 104.13 (t, J = 26.9), 75.15, 63.71, 55.92, 54.45, 54.40, 54.27, 50.85 (d, J = 7.7), 45.34, 42.52, 14.90. LC/MS (ESI): m/z 617.2. Calculated for C28H27ClF2N6O4S [M + H]+ 617.2
The compound was also synthesized by Method B (see 31a) with a 46% yield.
(Z)-5-(4-Chlorobenzylidene)-3-(4-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-4-oxobutyl)thiazolidine-2,4-dione (33a) was obtained from 24a and 4a. Yield 41%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ = 8.30 (s, 1H), 7.89 (s, 1H), 7.75 (s, 1H), 7.63 (d, J = 8.6, 2H), 7.60 (d, J = 8.6, 1H), 7.40 (d, J = 7.0, 1H), 7.16–7.13 (m, 1H), 6.96 (td, J = 8.5, 2.4, 1H), 5.84–5.60 (m, 1H), 4.58 (s, 2H), 3.66 (br. s, 2H), 2.85 (d, J = 14.0, 1H), 2.68 (d, J = 13.9, 1H), 2.30 (s, 2H), 1.90–1.72 (m, 3H). 13C NMR (176 MHz, DMSO-d6) δ 169.93, 167.63, 166.12, 162.12 (dd, J = 245.7, 12.4), 159.39 (dd, J = 246.9, 12.2), 150.91, 145.37, 135.61, 132.39, 132.15, 131.62, 130.25, 129.91, 126.53 (d, J = 13.3), 122.83, 111.19 (d, J = 20.5), 104.20, 75.13 (d, J = 5.3), 63.90, 56.02, 54.62, 54.39, 45.22, 41.92, 41.60, 29.74, 22.96. LC/MS (ESI): m/z 631.2. Calculated for C29H29ClF2N6O4S [M + H]+ 631.2.
The compound was also synthesized by Method B (see 31a) with a 32% yield.
(Z)-3-(4-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-4-oxobutyl)-5-(4-fluorobenzylidene)thiazolidine-2,4-dione (33b) was obtained from 24b and 4a. Yield 37%, yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.31 (s, 1H), 7.90 (s, 1H), 7.75 (s, 1H), 7.72–7.65 (m, 3H), 7.44–7.33 (m, 4H), 7.15 (t, J = 9.5, 1H), 6.96 (t, J = 7.2, 1H), 5.91–5.55 (m, 1H), 4.58 (s, 2H), 3.66 (t, J = 6.8, 2H), 3.26 (br. s, 6H), 2.47–2.21 (m, J = 7.0, 8H), 2.30 (t, J = 7.0, 2H), 1.82–1.79 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 169.96, 167.77, 166.19, 163.40 (d, J = 251.0), 162.16 (dd, J = 245.7, 12.2), 159.39 (dd, J = 246.9, 12.1), 150.94, 145.41, 133.04, 132.99, 131.91, 130.25, 130.16, 126.43, 121.75, 117.02 (d, J = 22.0), 111.24 (d, J = 20.4), 104.24 (t, J = 26.8), 75.04, 56.01, 54.35, 41.87, 29.73, 22.97. LC/MS (ESI): m/z 615.2. Calculated for C29H29F3N6O4S [M + H]+ 615.2.
(Z)-5-(2,4-Dichlorobenzylidene)-3-(4-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-4-oxobutyl)thiazolidin-2,4-dione (33g) was obtained from 13g and 4a. Yield 45%, yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.93 (s, 1H), 7.84 (d, J = 2.0, 1H), 7.75 (s, 1H), 7.61 (d, J = 1.9, 1H), 7.57 (d, J = 8.5, 1H), 7.41 (d, J = 7.0, 1H), 7.18–7.11 (m, J = 9.3, 1H), 6.97–6.95 (m, 1H), 5.72 (s, 1H), 4.58 (s, 2H), 3.67 (t, J = 6.8, 2H), 3.25 (s, 3H), 2.85 (d, J = 13.9, 1H), 2.68 (d, J = 13.9, 1H), 2.45–2.24 (m, 7H), 1.86–1.76 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 169.91, 167.41, 165.79, 162.12 (dd, J = 245.8, 12.4), 159.39 (dd, J = 246.9, 12.1), 150.92, 145.37, 136.07, 135.85, 130.50, 130.48, 130.45, 130.26 (t), 128.86, 126.51 (d, J = 2.0), 111.19 (d, J = 20.1), 104.20, 75.13 (d, J = 5.1), 63.90, 56.04, 56.02, 54.62, 54.41, 45.22, 42.09, 41.61, 29.77, 25.80, 22.88. LC/MS (ESI): m/z 665.1. Calculated for C29H28Cl2F2N6O4S [M + H]+ 665.1.
(Z)-3-(2-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-5-(4-chlorobenzylidene)-2-thio-1,3-thiazolidin-4-one (29a) (Method K): To a solution of 29 (0.33 mmol) in 3 mL of ethanol, 4-chlorobenzaldehyde (0.36 mmol, 1.1 equiv) was added, followed by piperidine (6 mg, 0.07 mmol, 0.2 equiv.). The mixture refluxed for 16 h, then was cooled and evaporated on a rotary evaporator. The product was isolated by flash chromatography on silica gel (elution system — 15% methanol in CH2Cl2). Yield 60%, yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ = 8.36 (s, 1H), 7.89 (s, 1H), 7.81 (s, 1H), 7.72 (d, J = 8.2, 2H), 7.67 (d, J = 8.3, 2H), 7.47 (q, J = 8.4, 1H), 7.22 (ddd, J = 11.7, 8.9, 2.6, 1H), 7.03 (td, J = 8.5, 2.5, 1H), 5.82 (s, 1H), 4.95 (s, 2H), 4.65 (s, 1H), 3.53–3.47 (m, 3H), 3.38 (dt, J = 10.5, 5.2, 2H), 2.96 (d, J = 13.8, 1H), 2.54–2.40 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 193.56, 166.97, 162.76, 162.16 (dd, J = 246.0, 12.7), 159.42 (dd, J = 247.0, 12.1), 150.95, 145.39, 136.27, 132.60, 132.20, 130.28 (t, J = 8.2), 130.07, 126.4 (d, J = 12.9), 123.26, 111.26 (d, J = 20.4), 104.25 (t, J = 27.0), 75.19 (d, J = 5.3), 63.82, 56.03 (d, J = 5.0), 54.61, 54.29, 45.67, 44.82, 42.35. HRMS (EI): Calcd for C27H25ClF2N6O3S2 [M + H]+ 619.1159. Found: 619.1137.
(Z)-5-(4-Chlorobenzylidene)-3-(2-(4-(2-(2,4-dichlorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-2-thioxothiazolidin-4-one (30a) was obtained as described above from 30 and 4-chlorobenzaldehyde. Yield 58%, bright yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.32 (s, 1H), 7.84 (s, 1H), 7.76 (s, 1H), 7.68 (d, J = 8.4, 2H), 7.62 (d, J = 8.3, 2H), 7.59–7.51 (m, 2H), 7.33 (d, J = 7.8, 1H), 5.86 (s, 1H), 4.91 (s, 1H), 4.89 (s, 2H), 4.67 (d, J = 14.0, 1H), 3.33–3.20 (m, 3H), 2.82 (d, J = 10.3, 1H), 2.47–2.24 (m, 3H). 13C NMR (176 MHz, DMSO-d6) δ 193.56, 166.95, 162.76, 150.98, 145.51, 136.26, 133.03, 132.79, 132.61, 132.20, 132.02, 131.22, 130.22, 130.08, 127.28, 123.26, 76.18, 62.31, 54.89, 54.32, 54.04, 45.65, 44.73, 42.27. LC/MS (ESI): m/z 651.1. Calculated for C27H25Cl3N6O3S2 [M + H]+ 651.1.
(Z)-5-(4-Methoxybenzylidene)-3-(2-(4-(2-(2,4-dichlorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-2-thio-1,3-thiazolidin-4-one (30c) was obtained as described above from 30 and 4-methoxybenzaldehyde. Yield 39%, bright yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.32 (s, 1H), 7.80 (s, 1H), 7.76 (s, 1H), 7.62 (d, J = 8.7, 2H), 7.57 (d, J = 8.6, 1H), 7.54 (s, 1H), 7.33 (d, J = 8.1, 1H), 7.12 (d, J = 8.7, 2H), 5.87 (s, 1H), 4.90 (d, J = 14.3, 1H), 4.88 (s, 2H), 4.67 (d, J = 14.3, 1H), 3.84 (s, 3H), 3.34–3.18 (m, 1H), 2.82 (d, J = 11.1, 1H), 2.48–2.28 (m, 1H). 13C NMR (176 MHz, DMSO-d6) δ 193.68, 167.09, 162.87, 162.14, 150.97, 145.50, 134.20, 133.51, 133.03, 132.02, 131.22, 130.22, 127.28, 125.88, 119.17, 115.66, 76.17, 62.31, 56.07, 54.89, 54.32, 54.04, 45.57, 44.73, 42.25. LC/MS (ESI): m/z 647.1. Calculated for C28H28Cl2N6O4S2 [M + H]+ 647.1.
(Z)-5-(3,5-Dichloro-2-hydroxybenzylidene)-3-(5-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazole-1-yl)propyl)piperazin-1-yl)-5-oxobutyl)thiazolidine-2,4-dione (33h) was obtained as described above from 26 and 3,5-dichloro-2-hydroxybenzaldehyde. Yield 51%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.98 (s, 1H), 7.75 (d, J = 3.4, 1H), 7.65 (d, J = 2.2, 1H), 7.40 (q, J = 8.8, 1H), 7.27 (d, J = 2.2, 1H), 7.19–7.10 (m, 1H), 6.96 (dd, J = 8.1, 6.5, 1H), 4.58 (s, 2H), 3.66 (t, J = 6.8, 2H), 2.86 (s, 1H), 2.69 (d, J = 13.8, 1H), 2.46–2.32 (m, 4H), 1.85–1.73 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 192.49, 172.92, 172.55, 169.98, 169.93, 167.60, 166.00, 162.13 (dd, J = 245.7, 12.3), 159.39 (dd, J = 247.1, 12.1), 152.23, 150.92, 145.37, 135.49, 131.35, 130.24 (t), 129.07, 126.95, 126.51 (d, J = 12.6), 124.90, 124.21, 123.92, 123.81, 111.20 (d, J = 20.4), 104.21 (t, J = 26.7), 75.08 (d, J = 4.9), 63.88, 56.04, 54.62, 54.40, 45.19, 41.90, 41.57, 41.32, 34.36, 29.75, 23.00. LC/MS (ESI): m/z 681.1. Calculated for C29H28Cl2F2N6O5S [M + H]+ 681.1.
(Z)-5-(2-Chloro-6-(4-methylpiperazin-1-yl)benzylidene)-3-(4-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-4-oxobutyl)thiazolidine-2,4-dione (33i) was obtained as described above from 26 and 2-chloro-6-(4-methylpiperazino)benzaldehyde. Yield 46%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.37 (s, 1H), 8.00 (s, 1H), 7.80 (s, 1H), 7.50–7.42 (m, J = 8.1, 2H), 7.27 (d, J = 7.9, 1H), 7.21 (d, J = 8.1, 1H), 7.20–7.17 (m, 1H), 7.01 (td, J = 8.5, 2.5, 1H), 5.82 (s, 1H), 4.63 (s, 2H), 3.70 (t, J = 6.8, 2H), 3.05 (br.s, 5H), 2.92 (d, J = 14.1, 1H), 2.73 (d, J = 13.8, 1H), 2.66 (s, 4H), 2.50–2.30 (m, 9H), 1.90–1.82 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 169.88, 167.87, 166.04, 163.61, 162.11 (dd, J = 245.7, 12.2), 159.40 (dd, J = 246.9, 12.0), 152.53, 150.90, 145.39, 134.34, 132.08, 130.26, 129.93, 126.56 (d, J = 12.8), 126.04, 125.18, 124.00, 118.47, 111.19 (d, J = 20.2), 104.18 (t, J = 26.9), 75.15 (d, J = 5.4), 63.90, 56.02, 54.60, 54.39, 54.17, 51.24, 45.25, 44.05, 41.75, 41.62, 29.83, 23.03, 22.59. LC/MS (ESI): m/z 729.3. Calculated for C34H39ClF2N8O4S [M + H]+ 729.3.
(Z)-5-(4-Chlorobenzylidene)-3-(5-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-5-oxopentyl)thiazolidin-2,4-dione (34a) was obtained as described above from 27 and 4-chlorobenzaldehyde. Yield 44%, yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.90 (s, 1H), 7.75 (s, 1H), 7.63 (d, J = 8.4, 2H), 7.59 (d, J = 8.5, 2H), 7.45–7.35 (m, 1H), 7.13 (t, J = 9.3, 1H), 6.95 (t, J = 7.2, 1H), 4.57 (s, J = 7.5, 2H), 3.64 (t, J = 6.9, 2H), 2.85 (d, J = 14.0, 1H), 2.68 (d, J = 13.8, 1H), 2.44–2.30 (m, 4H), 2.30–2.19 (m, 2H), 1.70–1.52 (m, 2H), 1.52–1.36 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 174.64, 170.52, 167.54, 166.03, 162.13 (dd, J = 245.8, 12.3), 159.38 (dd, J = 247.0, 12.1), 150.91, 145.37, 135.69, 132.32, 132.18, 131.98, 130.24 (t), 129.89, 126.50 (d, J = 12.9), 122.54, 111.19 (d, J = 20.3), 104.20 (t, J = 26.9), 75.11 (d, J = 5.1), 63.87, 56.02, 54.84, 54.48, 45.32, 41.93, 41.49, 32.00, 27.22, 22.4. LC/MS (ESI): m/z 645.2. Calculated for C30H31ClF2N6O4S [M + H]+ 645.2.
(Z)-3-(5-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-5-oxopentyl)-5-(4-fluorobenzylidene)thiazolidine-2,4-dione (34b) was obtained from 27 and 4-fluorobenzaldehyde. Yield 48%, yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.31 (s, 1H), 7.94 (s, 1H), 7.75 (s, 1H), 7.73–7.67 (m, 2H), 7.48–7.33 (m, 3H), 7.18–7.13 (m, 1H), 7.00–6.91 (m, 1H), 4.57 (s, 2H), 3.64 (t, J = 6.9, 2H), 3.29 (s, 4H), 2.87 (d, J = 12.2, 1H), 2.76–2.61 (m, 1H), 2.37 (s, 4H), 2.30–2.16 (m, 3H), 1.69–1.34 (m, 6H). 13C NMR (176 MHz, DMSO-d6) δ 174.63, 170.52, 167.69, 166.10, 163.44 (d, J = 250.8), 162.14 (dd, J = 245.8, 12.3), 159.39 (dd, J = 247.0, 12.1), 150.93, 145.39, 133.07 (d, J = 8.8), 132.26, 130.25 (t), 130.12, 126.46 (d, J = 11.9), 121.50, 117.02 (d, J = 22.0), 116.08 (d, J = 22.3), 111.22 (d, J = 20.2), 104.23 (t, J = 26.9), 75.06, 63.83, 56.01, 54.81, 54.46, 45.25, 41.89, 41.40, 33.46, 31.99, 27.23, 27.15, 27.06, 22.41, 22.33, 22.11. LC/MS (ESI): m/z 629.2. Calculated for C30H31F3N6O4S [M + H]+ 629.2.
(Z)-5-(2,4-Dichlorobenzylidene)-3-(5-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-5-oxopentyl)thiazolidin-2,4-dione (34g) was obtained from 27 and 2,4-dichlorobenzaldehyde. Yield 44%, bright yellow crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.94 (s, 1H), 7.82 (d, J = 1.6, 1H), 7.74 (s, 1H), 7.67–7.54 (m, 2H), 7.46–7.36 (m, 1H), 7.19–7.09 (m, 1H), 6.95 (t, J = 6.8, 1H), 4.58 (s, 2H), 3.64 (t, J = 6.9, 2H), 3.44–3.18 (m, 6H), 2.85 (d, J = 14.2, 1H), 2.68 (d, J = 13.7, 1H), 2.46–2.30 (m, 4H), 2.30–2.21 (m, 2H), 1.60–1.55 (m, 2H), 1.52–1.31 (m, 4H). 13C NMR (176 MHz, DMSO-d6) δ 174.62, 170.49, 167.34, 165.70, 162.12 (dd, J = 245.7, 12.4), 159.39 (dd, J = 246.9, 12.1), 150.91, 145.37, 136.14, 135.89, 130.53, 130.43, 130.25, 130.20, 128.83, 127.07, 126.52 (d, J = 12.9), 126.14, 111.19 (d, J = 20.3), 104.19 (t, J = 26.9), 75.12 (d, J = 4.7), 63.89, 56.02, 54.85, 54.49, 45.34, 42.09, 41.50, 32.00, 27.19, 22.41, 22.12. LC/MS (ESI): m/z 679.1. Calculated for C30H30Cl2F2N6O4S [M + H]+ 679.1.
(Z)-5-(3,5-Dichloro-2-hydroxybenzylidene)-3-(5-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-5-oxopentyl)thiazolidine-2,4-dione (34h) was obtained as described above from 27 and 3,5-dichloro-2-hydroxybenzaldehyde. Yield 41%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.30 (d, J = 2.8, 1H), 7.99 (s, 1H), 7.75 (d, J = 4.3, 1H), 7.65 (d, J = 2.4, 1H), 7.45–7.35 (m, 1H), 7.31–7.25 (m, 1H), 7.18–7.10 (m, 1H), 6.96 (dd, J = 5.9, 2.4, 1H), 4.58 (d, J = 5.0, 2H), 4.18 (d, J = 7.3, 1H), 2.87 (t, J = 13.8, 1H), 2.73–2.64 (m, 1H), 2.47–2.30 (m, 4H), 2.29–2.16 (m, 2H), 1.65–1.31 (m, 6H). 13C NMR (176 MHz, DMSO-d6) δ 174.65, 172.85, 172.50, 170.54, 167.54, 165.94, 162.13 (dd, J = 245.7, 12.4), 159.39 (dd, J = 247.5, 12.0), 152.21, 150.92, 145.37, 131.40, 130.23, 127.30, 127.04, 126.53, 126.49 (d, J = 13.0), 124.85, 124.02, 123.94, 123.81, 111.21 (d, J = 20.2), 104.29 (d, J = 26.3), 75.09 (d, J = 4.8), 63.86, 56.03, 54.83, 54.48, 45.30, 41.93, 41.47, 41.40, 41.27, 34.31, 33.49, 33.46, 31.99, 27.22, 27.15, 27.05, 26.95, 22.41, 22.34, 22.11, 22.07. LC/MS (ESI): m/z 695.1. Calculated for C30H30Cl2F2N6O5S [M + H]+ 695.1.
(Z)-5-(2-Chloro-6-(4-methylpiperazin-1-yl)benzylidene)-3-(5-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-5-oxopentyl)thiazolidin-2,4-dione (34i) was obtained as described above from 27 and 2-chloro-6-(4-methylpiperazin-1-yl)benzaldehyde. Yield 38%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ = 8.30 (s, 1H), 7.98 (s, 1H), 7.75 (s, J = 3.6, 1H), 7.40 (t, J = 8.0, 2H), 7.20 (d, J = 7.9, 1H), 7.14 (d, J = 8.3, 2H), 7.00–6.91 (m, 1H), 5.73 (s, 1H), 4.57 (s, 2H), 3.64 (t, J = 6.8, 2H), 3.59–3.10 (m, 10H), 2.94 (s, 3H), 2.85 (d, J = 13.7, 2H), 2.67 (d, J = 13.9, 1H), 2.44 (s, 3H), 2.42–2.29 (m, 5H), 2.27 (t, J = 7.2, 2H), 2.20 (s, 4H), 1.63–1.53 (m, 2H), 1.46–1.38 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 170.48, 167.77, 165.98, 163.51, 162.12 (dd, J = 245.6, 12.3), 159.39 (dd, J = 246.8, 12.3), 152.79, 150.91, 145.37, 134.35, 132.11, 130.41, 130.24, 126.54 (d, J = 12.6), 125.62, 125.05, 123.79, 118.42, 111.19 (d, J = 20.3), 104.20 (t, J = 26.8), 75.14 (d, J = 5.2), 63.90, 56.04, 55.31, 54.86, 54.55, 54.49, 51.82, 45.96, 45.34, 41.69, 41.51, 31.98, 27.31, 22.38. LC/MS (ESI): m/z 743.3. Calculated for C35H41ClF2N8O4S [M + H]+ 743.3.
(Z)-3-(1-(2,4-Dichlorophenyl)-2-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-2-oxoethyl)-5-(4-fluorobenzylidene)thiazolidine-2,4-dione (35b) was obtained from 30 and 4-fluorobenzaldehyde. Yield 33%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.27 (d, J = 1.1, 1H), 7.95 (s, 1H), 7.74 (d, J = 1.2, 1H), 7.72–7.68 (m, 3H), 7.52–7.47 (m, 1H), 7.43–7.35 (m, 4H), 7.13 (t, J = 9.8, 1H), 6.94 (td, J = 8.5, 2.5, 1H), 6.32 (d, J = 2.3, 1H), 5.70 (s, 1H), 4.55 (d, J = 6.7, 2H), 3.47 (d, J = 23.1, 2H), 3.09 (d, J = 3.2, 1H), 2.91–2.76 (m, 2H), 2.68 (t, J = 13.8, 1H), 2.59–2.37 (m, 3H), 2.36–2.15 (m, 2H). 13C NMR (176 MHz, DMSO-d6) δ 166.62, 165.09, 163.62 (d, J = 251.5), 163.10 (d, J = 4.0), 163.11, 163.09, 162.11 (dd, J = 245.8, 12.5), 159.35 (dd, J = 248.7, 10.2), 150.94, 145.36, 135.06, 134.37, 134.18, 134.14, 133.78, 133.34, 133.29, 130.24, 129.88, 129.65, 129.10, 129.07, 127.63, 126.36 (d, J = 11.8), 119.80, 117.14, 117.02, 111.21 (d, J = 20.4), 104.23 (t, J = 26.8), 75.18 (dd, J = 12.6, 5.2), 63.67, 63.61, 56.54, 56.03, 55.95, 54.05, 54.00, 53.91, 45.80, 42.76. HRMS (EI): Calcd for C33H27Cl2F3N6O4S [M + H]+ 731.1216. Found: m/z 731.1033.
3-Chloro-1-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)-piperazin-1-yl)propan-1-one (49). 2-(2,4-Difluorophenyl)-1-(piperazin-1-yl)-3-(1H-1,2,4-triazol-1-yl)propan-2-ol hydrochloride (4b) (700 mg, 1.95 mmol) was suspended in methylene chloride (20 mL), then triethylamine (591 mg, 5.84 mmol, 3 equiv) was added. RM was cooled in an ice bath, and 3-chloropropionyl chloride (296 mg, 2.33 mmol, 1.2 equiv) was added dropwise. Upon full addition of the acyl chloride, the pH of the mixture was adjusted to 8 with Et3N if needed. The reaction mixture was allowed to heat to room temperature and stirred overnight. It was then washed with a saturated citric acid solution to achieve an acidic pH, the organic layer was separated, dried over Na2SO4, and the solvent evaporated under vacuum. The resulting residue was redissolved in CH2Cl2 and purified by flash chromatography on silica gel (eluent—methanol:CH2Cl2 1:25). Yield 80% (647 mg), dark yellow oil. The substance was used in the next step without purification. LC/MS(+ESI): Found m/z 414.2. Calcd for C18H22ClF2N5O2 [M + H]+ 414.2.
(Z)-5-(4-Chlorobenzylidene)-3-(3-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-3-oxopropyl)thiazolidin-2,4-dione (50a) (Method C). Potassium salt of 5-(4-chlorobenzylidene)thiazolidine-2,4-dione (222 mg, 0.8 mmol) is suspended in 4 mL of DMF, then 4-(3-chloroethylcarbonylpiperazin-1-yl)-3-(1H-1,2,4-triazolyl-1-yl)propan-2-ol (49) (322 mg, 0.8 mmol, 1 equiv.) and potassium iodide (134 mg, 0.8 mmol, 1 equiv) were added. The resulting suspension was stirred for 12 h at 80 °C. Then, the reaction mixture was diluted with water (20 mL) and extracted with ethyl acetate (3 × 3 mL). The organic layer was separated, dried over Na2SO4, and evaporated on a rotary evaporator. The residue was redissolved in CH2Cl2, and subjected to chromatography on silica gel (eluent— 5% methanol in methylene chloride). Yield 18%, pale yellow foam. 1H NMR (700 MHz, DMSO-d6) δ 8.30 (s, 1H), 7.93 (s, 1H), 7.75 (s, 1H), 7.65 (d, J = 8.7, 2H), 7.62 (d, J = 8.6, 2H), 7.40 (d, J = 6.9, 1H), 7.19–7.13 (m, 1H), 6.96 (td, J = 8.5, 2.5, 1H), 5.73 (s, 1H), 4.58 (s, 2H), 3.84–3.78 (m, 2H), 3.31–3.23 (m, 3H), 2.87 (d, J = 13.8, 1H), 2.69 (d, J = 13.9, 1H), 2.67–2.61 (m, 2H), 2.47–2.32 (m, 4H). 13C NMR (176 MHz, DMSO-d6) δ 168.18, 167.31, 165.80, 162.12 (dd, J = 245.7, 12.4), 159.40 (dd, J = 246.9, 12.2), 150.94, 145.38, 135.71, 132.33, 132.20, 131.96, 130.26, 129.95, 126.52 (d, J = 11.6), 122.59, 111.21 (d, J = 20.3), 104.22, 75.18 (d, J = 4.7), 63.87, 56.02, 54.61, 54.27, 45.27, 41.45, 40.48, 38.45, 30.53. LC/MS (ESI): m/z 617.2. Calculated for C28H27ClF2N6O4S [M + H]+ 617.2.
(Z)-3-(3-(4-(2-(2,4-Difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-3-oxopropyl)-5-(4-methoxybenzylidene)thiazolidine-2,4-dione (50c) was obtained as described above from potassium salt of 5-(4-methoxybenzylidene)thiazolidine-2,4-dione (5c) and 49. Yield 10%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ 8.29 (s, 1H), 7.88 (s, 1H), 7.75 (s, 2H), 7.60 (d, J = 8.8, 2H), 7.57 (d, J = 8.8, 2H), 7.43–7.37 (m, 1H), 7.19–7.14 (m, 1H), 7.11 (t, J = 8.2, 4H), 6.96 (td, J = 8.5, 2.5, 1H), 4.58 (s, 2H), 3.83 (d, J = 4.3, 7H), 3.82–3.79 (m, 1H), 3.30–3.24 (m, 1H), 2.86 (d, J = 14.1, 1H), 2.69 (d, J = 13.9, 1H), 2.66–2.59 (m, 1H), 2.46–2.32 (m, 4H). 13C NMR (176 MHz, DMSO-d6) δ 168.58, 168.21, 167.63, 166.03, 162.12 (dd, J = 245.3, 12.1), 161.65, 161.42, 159.40 (dd, J = 246.9, 12.3), 150.94, 145.37, 133.36, 132.72, 132.53, 132.12, 130.25, 126.53 (d, J = 13.0), 126.02, 125.88, 121.01, 118.48, 115.47, 115.38, 111.21 (d, J = 19.9), 104.22 (t, J = 26.9), 75.18 (d, J = 5.1), 63.88, 55.99, 55.95, 54.62, 54.28, 45.27, 41.45, 40.48, 38.31, 30.62. LC/MS (ESI): m/z 613.2. Calculated for C29H30F2N6O5S [M + H]+ 613.2.
(Z)-5-(2,4-Dichlorobenzylidene)-3-(3-(4-(2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl)piperazin-1-yl)-3-oxopropyl)thiazolidine-2,4-dione (50g) was obtained as described above from potassium salt of 5-(2,4-dichlorobenzylidene)thiazolidine-2,4-dione (5g) and 49. Yield 20%, white crystals. 1H NMR (700 MHz, DMSO-d6) δ = 8.32 (s, 1H), 7.95 (s, 1H), 7.86 (d, J = 2.1, 1H), 7.76 (s, 1H), 7.62 (dd, J = 8.4, 2.0, 1H), 7.58 (d, J = 8.4, 1H), 7.41 (d, J = 7.1, 1H), 7.20–7.14 (m, 1H), 6.98 (s, 1H), 4.59 (s, 2H), 3.85–3.77 (m, 2H), 2.89 (s, 1H), 2.74 (s, 1H), 2.66 (t, J = 7.6, 2H). 13C NMR (176 MHz, DMSO-d6) δ 168.20, 167.09, 165.45, 164.48, 162.77, 162.20 (dd, J = 246.0, 12.3), 159.39 (dd, J = 247.0, 12.2), 150.98, 145.43, 136.17, 135.86, 130.54, 130.47, 130.44, 130.39, 130.26, 128.89, 128.80, 128.50, 127.81, 127.16, 126.19, 125.91, 111.30 (d, J = 19.8), 104.30 (t, J = 26.9), 74.97, 63.64, 55.99, 54.48, 54.18, 40.47, 38.54, 36.25, 31.23, 30.41. LC/MS (ESI): m/z 651.1. Calculated for C28H26Cl2F2N6O4S [M + H]+ 651.1.

6.2. Biochemistry and Microbiology

MIC determination. The minimal inhibitory concentrations (MICs) of the compounds obtained were determined using the microdilution method in RPMI 1640 medium buffered to pH 7.0 with MOPS [32]. The test compounds were evaluated against human pathogens: Candida spp. and dermatophytes. Fluconazole was used as the reference antifungal drug. Compounds were dissolved in DMSO and serially diluted in nutrient medium (concentration range 0.125–128 mg/L). The inoculum suspension was added to each well and incubated at 35 °C. Microdilution plates were visually inspected after 24–48 h and 96 h of incubation for growth of yeast and filamentous fungi, respectively. MIC was defined as the minimum inhibitory concentration of test compound which resulted in total inhibition of the fungal growth. All susceptibility testing was performed in triplicate. Clinical and reference strains of Candida spp.: C. parapsilosis ATCC 22019, C. albicans ATCC 24433, C. tropicalis 3019, C. kefyr 77, C. famata 312, C. guilliermondii 355, C. parapsilosis 58N, C. krusei 432M, and C. glabrata 61L. Clinical and reference strains of filamentous fungi: A. niger 37a, Aspergillus fumigatus ATCC 46645, Microsporum canis B-200, and Trichophyton rubrum 2002.
Microbiology. The analysis was carried out by the serial microdilutions method in accordance with ISO 16256:2012 [33] “Clinical laboratory testing and in vitro diagnostic test systems—Reference method for testing the in vitro activity of antimicrobial agents against yeast fungi involved in infectious diseases” and the recommendations of the World Non-Profit Organization for the Development of Standards and Recommendations in Medicine (Reference method for broth dilution antifungal susceptibility testing of filamentous fungi; approved standard, 2nd ed. CLSI document M38-A, Antifungal Susceptibility Testing of Yeasts: M27-A2. 2008. Clinical and Laboratory Standards Institute, Wayne, PA, USA). The samples of all the compounds were dissolved in dimethyl sulfoxide (DMSO) to provide the main solutions with concentration of 10.0 mg/mL. The main solutions were diluted in a nutrient medium to a concentration of 64 μg/mL to make the working solutions, then further diluted to the concentrations from 32.0 to 0.015 μg/mL. A series of double dilutions of the test samples was prepared in 96-well immunological plates in a volume of 100 μL of RPMI-1640 medium with L-glutamine (Sigma-Aldrich) containing 0.2% glucose. After sowing, the yeast cultures were incubated 24–48 h at 35 °C, filamentous fungi—for 48–96 h.
In vivo tests. The Candida albicans RCPH Y 1274 strain was obtained from the Russian Collection of Pathogenic Fungi, Research Institute of Medical Mycology named after P.N. Kashkin. The strain is resistant to fluconazole and sensitive to voriconazole. Saburo medium composition: distilled water—1 L, enzymatic peptone—10 g, glucose—40 g, agar—18 g.
Laboratory animals. For this study, white male outbred mice from Rappolovo nursery were used. Body weight at the beginning of the experiment was 20 g. Animals were subjected to adaptation for 7 days of admission to the laboratory. During this period, a daily inspection of the condition of the animals was carried out. Before inclusion in the study, the animals were examined by a veterinarian. Animals with deviations detected during the examination were not included in the study. For the experiment, five groups of animals were formed (six mice in each group) by random selection, including three experimental (No. 1, 2, 3), one group for the introduction of voriconozole (B), and the control group (D—intraperitoneal injection of 0.5 mL 20% DMSO). To compare the efficiency of suppressing C. albicans yeast cell germination in the mice glands with different doses of compound 31a and voriconazole, the percentage of germination of yeast cells in each of these groups of animals was calculated in relation to control group D (20% DMSO). The percentage of inhibition of germination of C. albicans cells was calculated as 100% minus percentage of germination.

6.3. Molecular Modeling

Docking of ligands in the binding site of CYP51 was done using DOCK 6.9 software [34]. Crystallographic structure of CYP51 from C. albicans SC5314 in complex with VT1161 (PDB ID 5TZ1, resolution of 2.0 Å) was chosen as a receptor model and prepared for docking using Chimera [35]. The water molecule coordinated by hydrogen bonds with the hydroxyl group of the VT1161, heme, and Y132 sidechain was considered as essential [36]. It was retained in the receptor’s model because studied ligands shared similar with fluconazole and VT1161 core bearing hydroxyl group at quaternary carbon. Standard procedure of DOCK 6.9 was used to map the binding site and to generate grids [34].
Chimera 1.15 [35] was used to calculate three-dimensional conformations of ligands and protonation states of polar heavy atoms. AM1-BCC charges were added [37] and docking was performed using Grid Score scoring function. The redocking of crystallographic ligand VT1161 reproduced experimental conformation with RMSD over heavy atoms of 0.5 Å (Figure S4A). However, the docking of fluconazole provided inverted binding mode. The latter was attributed to the lack of parametrization for chelating interactions in the scoring function. To address this issue, positional constraints were applied to triazole cycle of the docked ligands to ensure its correct orientation in the chelate complex with heme. Restrained docking produced the expected conformation of fluconazole (Figure S4B) and was used to predict binding modes of studied ligands. Pymol 1.8 (Schrodinger, LLC, New York, NY, USA) and Chimera 1.15 [35] were used for analysis and visualization of binding modes.

6.4. Analysis of Homology

The alignment of CYP51 amino acid sequences from C. albicans (Uniprot ID P10613) and C. parapsilosis ATCC 22019 (Uniprot ID C7EXA5) was conducted using NCBI Blast [37]. The three-dimensional homology model of C. parapsilosis CYP51 was built using Swiss-Model web server [38]. The model was superimposed over the crystallographic structure of CYP51 from C. albicans (PDB ID 5TZ1) and structure-based sequence alignment was performed in Chimera 1.15 [39], followed by an analysis of the binding site homology using in-house scripts.

7. Conclusions

In this work, a series of hybrid molecules based on thiazolidine-4-one and triazole have been synthesized. Various synthetic methods for them have been tested. A microbiological assessment of new hybrid derivatives in comparison with the previously obtained compounds was carried out. The lowest obtained MIC values on strains of yeast and filamentous fungi of the genus Candida spp., Aspergillus spp., Rhizopus spp. for compounds with 4-chloro-, 2,4-dichloro-, and 4-methoxy- substituents range between 0.003 µg/mL and 0.5 µg/mL and are not inferior or several times better than commercial drugs fluconazole, amphotericin B, itraconazole, and ketoconazole. Structural changes made to various fragments of the leader molecule L-173 did not result in an improvement in MIC values. The homological increase in the linker chain slightly reduced the activity compared to L-173, and to a greater extent, this was reflected in the MIC values for the longest linker (compound 34a, n = 3). The activity remained sufficiently high for all strains of fungi (MIC 0.25–4 µg/mL). At the same time, the addition of a large 2,4-dichlorophenyl substituent (31b) next to the thiazolidine core in the hybrid structure completely deprived the molecules of microbiological activity, which is in good agreement with the binding model predicted by docking. The replacement of oxygen for sulfur in the thiazolidine nucleus (29a) or fluorine atoms for chlorine atoms in the phenyl nucleus of the triazole fragment (30a) slightly reduced the activity of Candida parapsilosis, and completely deprived the molecules of activity against Aspergillus spp.
Molecular modeling provided a congruent interpretation of the SAR experimentally observed for triazole series. The optimal extended shape of thiazolidinedione arm is crucial for affinity as well as hydrophobic interactions between benzylidene moiety and residues at the gate to the substrate access channel. In vivo the leader L-173 is twice more effective in inhibiting the formation of germ tubes by Candida albicans yeast cells, in the same doses as Voriconazole (31 via 17%). Thus, L-173 is of interest for medicine and can be used for prevention and treatment of infectious diseases, in particular caused by various fungal infections, e.g.,: dermatophytosis, superficial mycosis, candidiasis of the skin and nails, vaginal candidiasis, candidal stomatitis, endocarditis and other diseases of humans and animals.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/ph17060723/s1. References [40,41] are cited in the supplementary materials.

Author Contributions

Conceptualization, I.B.L., A.A.P. and V.I.P.; Data curation, A.A.P., A.I.A., V.A.I. and V.I.P.; Investigation, A.Y.S., A.I.A., E.S.M.O.G., V.A.I., M.O.A. and A.B.M.; Methodology, A.Y.S. and A.B.M.; Project administration, I.B.L.; Resources, N.E.G., A.I.A., V.A.I., M.O.A. and V.I.P.; Software, V.A.I., A.B.M. and V.I.P.; Validation, N.E.G.; Writing—original draft, I.B.L., A.I.A., M.O.A. and A.B.M.; Writing—review and editing, I.B.L., A.A.P. and M.O.A. All authors have read and agreed to the published version of the manuscript.

Funding

This research was partially funded by grants from the Russian Science Foundation: #22-24-00756 (collection of data on changes in GFP-fusion protein levels in S. cerevisiae and sensitivity of mutant strains to Mycosidine); #24-14-00090 (review and visualization of data on effects of azoles and thiazolidines) and the Ministry of Science and Higher education (determination of MICs and death assays in S. cerevisiae). E.S.M.O.G. was partially funded by a joint scholarship (Executive program) from the Arab Republic of Egypt and the Russian Federation. NMR studies were supported by the Russian Science Foundation (grant #24-14-00081).

Institutional Review Board Statement

All experiments in vivo were performed in accordance with the European Convention for the Protection of Vertebrate Animals [42], and the National standard of the Russian Federation R 53434-2009 “Good Laboratory Practice” [43]. The animal study was approved by the Ethics of Animal Experimentation of Gause Institute of New Antibiotics (protocol No 13/2019).

Informed Consent Statement

Not applicable.

Data Availability Statement

Data are contained within the article and Supplementary Materials.

Acknowledgments

The authors are grateful to the Hans Knöll Institute (HKI) (Florian Kloss, Transfer Group Anti-infectives, Leibniz Institute for Natural Product Research and Infection Biology, Leibniz-HKI, Jena, Germany) for the microbiology testing. The authors are also grateful to the Research Institute of Medical Mycology named after P.N. Kashkin (Vasiljeva N.B. and Bogomolova T.S.) for conducting in vivo tests. The work of I.B.L., A.Y.S., N.E.G. and A.A.P. was carried out as part of the scientific project of the state task of the Gause Institute of New Antibiotics. The authors are grateful to Moscow State University (Russia) for the opportunity to use the NMR facilities and to Svetlana Savelieva for the expert technical assistance in the NMR measurements. NMR studies were performed under the State Assignment of Lomonosov Moscow State University (“NMR studies of the structure of physiologically active compounds and their interactions with biological targets”). Flow cytometry was performed at the Shared-Access Equipment Centre “Industrial Biotechnology” of FRC “Fundamentals of Biotechnology” (RAS).

Conflicts of Interest

The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.

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Figure 1. Structures of some modern commercial azole antifungal drugs.
Figure 1. Structures of some modern commercial azole antifungal drugs.
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Figure 2. Some biologically active agents bearing hybrid scaffolds described in the literature [14,15].
Figure 2. Some biologically active agents bearing hybrid scaffolds described in the literature [14,15].
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Figure 3. Structures of hybrid piperazine substituted triazoles described in the literature [15,16,17].
Figure 3. Structures of hybrid piperazine substituted triazoles described in the literature [15,16,17].
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Figure 4. The newly designed antifungal scaffold and dissection of it into four domains for SAR study.
Figure 4. The newly designed antifungal scaffold and dissection of it into four domains for SAR study.
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Figure 5. Structural formulas of previously synthesized hybrid compounds L-17320, L-31016, L-16316.
Figure 5. Structural formulas of previously synthesized hybrid compounds L-17320, L-31016, L-16316.
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Scheme 1. Synthesis of piperazine-derived intermediates 4a,b. Reagents and conditions: (i) EtOH, Et3N, 80 °C; (ii) CF3COOH/CH2Cl2, r.t. or HCl/ethyl acetate, r.t.
Scheme 1. Synthesis of piperazine-derived intermediates 4a,b. Reagents and conditions: (i) EtOH, Et3N, 80 °C; (ii) CF3COOH/CH2Cl2, r.t. or HCl/ethyl acetate, r.t.
Pharmaceuticals 17 00723 sch001
Scheme 2. Synthesis of 3- and 5-substituted thiazolidine-2,4-diones. Reagents and conditions: (i) RCHBr(CH2)nCOOAlk/K2CO3, acetonitrile, acetone or DMF, r.t. or 50 °C; (ii) CH3COOH, HCl, reflux; (iii) substituted benzaldehyde, CH3COOH, MeNH2, reflux.
Scheme 2. Synthesis of 3- and 5-substituted thiazolidine-2,4-diones. Reagents and conditions: (i) RCHBr(CH2)nCOOAlk/K2CO3, acetonitrile, acetone or DMF, r.t. or 50 °C; (ii) CH3COOH, HCl, reflux; (iii) substituted benzaldehyde, CH3COOH, MeNH2, reflux.
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Scheme 3. Synthesis of hybrid piperazine amides 2430 and 3135. Reagents and conditions: (i) SOCl2, Et3N, r.t.; or TBTU, CH2Cl2; (ii) C2H5OH, Et3N, reflux.
Scheme 3. Synthesis of hybrid piperazine amides 2430 and 3135. Reagents and conditions: (i) SOCl2, Et3N, r.t.; or TBTU, CH2Cl2; (ii) C2H5OH, Et3N, reflux.
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Scheme 4. Synthesis of acylpiperazine derivatives. Reagents and conditions: (i) SOCl2, CH2Cl2, then 1-Boc-piperazine, Et3N, r.t.; (ii) CDI, CH2Cl2, then 1-Boc-piperazine, Et3N, r.t.; (iii) CF3COOH/CH2Cl2, r.t. or HCl/ethyl acetate, r.t.; (iv) aromatic aldehydes, EtOH, piperidine, reflux.
Scheme 4. Synthesis of acylpiperazine derivatives. Reagents and conditions: (i) SOCl2, CH2Cl2, then 1-Boc-piperazine, Et3N, r.t.; (ii) CDI, CH2Cl2, then 1-Boc-piperazine, Et3N, r.t.; (iii) CF3COOH/CH2Cl2, r.t. or HCl/ethyl acetate, r.t.; (iv) aromatic aldehydes, EtOH, piperidine, reflux.
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Scheme 5. Synthesis of acylpiperazine hybrids by Method B. Reagents and conditions: (i) dry toluene/N-methylpyrrolidone, Et3N, reflux.
Scheme 5. Synthesis of acylpiperazine hybrids by Method B. Reagents and conditions: (i) dry toluene/N-methylpyrrolidone, Et3N, reflux.
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Scheme 6. Synthesis of target hybrid derivatives by alkylation of K-salts of 5-arylidene thiazolidine-2,4-diones 48a,c,g with 3-chloropropanoic acid amide 49. Reagents and conditions: (i) dry DMF, KI, 100 °C.
Scheme 6. Synthesis of target hybrid derivatives by alkylation of K-salts of 5-arylidene thiazolidine-2,4-diones 48a,c,g with 3-chloropropanoic acid amide 49. Reagents and conditions: (i) dry DMF, KI, 100 °C.
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Figure 6. Binding modes of synthesized ligands in the active site of C. albicans CYP51 revealed by docking: (A) Ligand 31a; (B) Superimposition of docked pose of 31a (magenta) over the crystallographic conformation of VT1161 (green); (C) Superimposition of docked poses of 31a (magenta) and 34a (yellow); (D) Superimposition of docked pose of L-310 (brown) over the crystallographic conformation of VT1161 (green). Hydrogen bonds are shown by dashed yellow lines; heme and selected residues of the receptor are depicted by sticks. A fragment of the binding site’s molecular surface is shown.
Figure 6. Binding modes of synthesized ligands in the active site of C. albicans CYP51 revealed by docking: (A) Ligand 31a; (B) Superimposition of docked pose of 31a (magenta) over the crystallographic conformation of VT1161 (green); (C) Superimposition of docked poses of 31a (magenta) and 34a (yellow); (D) Superimposition of docked pose of L-310 (brown) over the crystallographic conformation of VT1161 (green). Hydrogen bonds are shown by dashed yellow lines; heme and selected residues of the receptor are depicted by sticks. A fragment of the binding site’s molecular surface is shown.
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Figure 7. Effects of L-173 and reference azole and thiazolidine compounds on the abundance of GFP-fusion proteins and staining with propidium iodide. (A) Flow cytometric analysis of GFP fluorescence. Red indicates increased abundance and blue indicates decreased. Dark arrows highlight changes that are similar between the azoles and L-173, black boxes indicate changes that are similar between L-173 and Mycosidine, and green arrows highlight unique features of L-173. Each concentration was tested in duplicate; (B) distributions of GFP fluorescence of indicated proteins; (C) flow-cytometric-based scatter plot of cell size vs. propidium iodide (PI) fluorescence, a measure of cell membrane permeability. PI in red denotes the % of cell positive for PI staining. Mycosidine MIC = 15 µg/mL, 0.5 × MIC = 7.5 µg/mL, L-173 MIC = 62 µg/mL, 0.5 × MIC = 31 µg/mL, Voriconazole MIC = 0.04 µg/mL, 0.5 × MIC = 0.02 µg/mL, Fluconazole MIC = 15 µg/mL, 0.5 × MIC = 7.5 µg/mL.
Figure 7. Effects of L-173 and reference azole and thiazolidine compounds on the abundance of GFP-fusion proteins and staining with propidium iodide. (A) Flow cytometric analysis of GFP fluorescence. Red indicates increased abundance and blue indicates decreased. Dark arrows highlight changes that are similar between the azoles and L-173, black boxes indicate changes that are similar between L-173 and Mycosidine, and green arrows highlight unique features of L-173. Each concentration was tested in duplicate; (B) distributions of GFP fluorescence of indicated proteins; (C) flow-cytometric-based scatter plot of cell size vs. propidium iodide (PI) fluorescence, a measure of cell membrane permeability. PI in red denotes the % of cell positive for PI staining. Mycosidine MIC = 15 µg/mL, 0.5 × MIC = 7.5 µg/mL, L-173 MIC = 62 µg/mL, 0.5 × MIC = 31 µg/mL, Voriconazole MIC = 0.04 µg/mL, 0.5 × MIC = 0.02 µg/mL, Fluconazole MIC = 15 µg/mL, 0.5 × MIC = 7.5 µg/mL.
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Table 1. Overview of the synthesized hybrid compounds.
Table 1. Overview of the synthesized hybrid compounds.
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WnR1R2HalMethodYield, %
24O0H-FA52
25O0Me-FA25
26O2H-FA69
27O3H-FA65
28O02,4-Cl2Ph-FA34
29S0H-FA20
30S0H-ClA28
31aO0H4-ClFA, B, K69, 51, 57
31bO0H4-FFA72
31cO0H4-OMeFA61
31dO0H4-EtFA72
31eO0H4-i-PrFA65
31fO0H4-t-BuFA63
31gO0H2,4-Cl2FA, K58, 48
32aO0Me4-ClFA, B72, 46
33aO2H4-ClFA, B, K41, 32, 42
33bO2H4-FFA37
33gO2H2,4-Cl2FA45
33hO2H2-OH-3,5-Cl2FK51
33iO2H2-Cl-6-(4-MePip)FK46
34aO3H4-ClFK44
34bO3H4-FFK48
34gO3H2,4-Cl2FK44
34hO3H2-OH-3,5-Cl2FK41
34iO3H2-Cl-6-(4-MePip)FK38
35bO02,4-Cl2Ph4-FFK33
50aO1H4-ClFC18
50cO1H4-OMeFC10
50gO1H2,4-Cl2FC20
29aS0H4-ClFK60
30aS0H4-ClClK58
30cS0H4-OMeClK39
Table 2. 1H, 13C, and 15N chemical shifts of L-173 and L-310 measured in DMSO-d6 at 298 K and 600 MHz proton resonance frequency.
Table 2. 1H, 13C, and 15N chemical shifts of L-173 and L-310 measured in DMSO-d6 at 298 K and 600 MHz proton resonance frequency.
Pharmaceuticals 17 00723 i002Pharmaceuticals 17 00723 i003
PositionL-173L-310
δ(1H), ppmδ(13C), ppm δ(1H), ppmδ(13C), ppm
2-166.8-167.4-
3----162.6
4-165.2-166.0-
5-121.7-122.0-
67.92132.17.86131.5-
7-135.4-135.3-
87.63131.87.62131.9-
97.58129.57.58129.6-
10-131.7-132.2-
114.5442.64.11; 4.1348.1-
12-162.9---
13-----
143.3241.8---
152.38; 2.4153.7---
16-----
172.43; 2.4854.0---
183.3744.1---
192.71; 2.8863.4---
205.74 (OH)74.76.11 (OH)74.3-
214.5855.54.59; 4.8155.0-
22----211.6
23----298.4
247.75150.57.69150.6-
25----252.3
268.29144.98.27145.0-
27-126.0-123.9-
28-158.9-159.5-
297.14103.87.17104.0-
30-161.7-162.1-
316.95110.86.87110.9-
327.41129.87.25129.7-
Table 3. In vitro antifungal action (MIC, µg/mL) of 3a, 4a, L-310, L-163 against C. parapsilosis, Aspergillus spp., and dermatophytes.
Table 3. In vitro antifungal action (MIC, µg/mL) of 3a, 4a, L-310, L-163 against C. parapsilosis, Aspergillus spp., and dermatophytes.
StrainsPharmaceuticals 17 00723 i004Pharmaceuticals 17 00723 i005Pharmaceuticals 17 00723 i006Pharmaceuticals 17 00723 i007
3a4aL-31016L-16316
24 h48 h24 h48 h24 h48 h24 h48 h
C. parapsilosis
ATCC 22019
12–432>320.51.00.5–1.02
A. niger 37a816–32416
M. canis B-20016320.50.5–1.0
T. rubrum 200216>3244
Table 4. Antifungal activity (MIC, µg/mL) of some hybrid compounds against C. parapsilosis, Aspergillus spp., and dermatophytes evaluated by the double micro-dilutions method in broth.
Table 4. Antifungal activity (MIC, µg/mL) of some hybrid compounds against C. parapsilosis, Aspergillus spp., and dermatophytes evaluated by the double micro-dilutions method in broth.
C. parapsilosis ATCC 22019A. niger 37aA. fumigatus 46645M. canis B-200T. rubrum 2002
24 h48 h
38a>32>32>32>32>32>32
39a48>32>32>32>32
39b48>32>32>32>32
44a1632>32>323232
45a3232>32>323232
46a3232>32>323232
47a0.250.5323288–16
47b0.250.5323288
Table 5. In vitro antifungal activities (MIC, µg/mL) of compounds 47a,b and fluconazole against clinical species of Candida spp. and Cryptococcus neoformans. * Flc—fluconazole.
Table 5. In vitro antifungal activities (MIC, µg/mL) of compounds 47a,b and fluconazole against clinical species of Candida spp. and Cryptococcus neoformans. * Flc—fluconazole.
StrainsC. parapsilosis ATCC 22019C. albicans ATCC 24433C. parapsilosis 58LC. tropicalis 3019C. glabrata 61LCryptococcus neoformansC. albicans 8 (R)C. krusei 432M
24 h48 h24 h48 h24 h48 h24 h48 h24 h48 h24 h48 h24 h48 h24 h48 h
47a0.5216320.520.524321616232832
47b0.5116320.510.514161616232816
Flc *44>32>3281616168163232>32>3232>32
Table 6. Results of an in vitro study of the antifungal action of the hybrid compounds against C. parapsilosis, Aspergillus spp., and dermatophytes. Presented values are MIC in µg/mL.
Table 6. Results of an in vitro study of the antifungal action of the hybrid compounds against C. parapsilosis, Aspergillus spp., and dermatophytes. Presented values are MIC in µg/mL.
C. parapsilosis ATCC 22019A. niger
37a
A. fumigatus
46645
M. canis
B-200
T. rubrum
2002
24 h48 h
24>32>32>32>32>32>32
25>32>32>32>32>32>32
26>32>32>32>32>32>32
27>32>32>32>32>32>32
28>32>32>32>32>32>32
29>32>32>32>32>32>32
29a0.030.25>32>320.5–10.5
30>32>32>32>32>32>32
30a0.50.5–1>32>320.5–10.5
30c<0.0150.068160.125–0.0151.0–0.015
31a (L-173)0.030.03120.0150.015
31b0.252440.250.25
31c0.030.06>32>320.125–0.031.0–0.03
31d0.030.50.25–0.5410.5
31e0.1250.250.5420.5–1
31f1212–420.5
31g0.030.06240.060.03
32a0.1250.5220.51
33a0.0150.5–1440.5–10.25
33b48–16880.50.25
33h88>32>323232
33i22–4>32>321616
34a22–4440.50.25
34b0.516440.50.25
34h44>32>32168
34i88>32>32168
35b>32>32>32>32>32>32
37g11–244–80.5–132
38g2>328810.25
50a0.1250.25440.250.125
50c1188–1642
50g0.50.5–1880.250.125
Flu0.54>321632>32
Itra0.030.060.520.50.25
AmB120.50.25–0.50.1250.25
Table 7. In vitro antifungal activities (MIC, µg/mL) of compounds 29a, 30a, 31a,dg, and 32a against clinical species of Candida spp. and Cryptococcus neoformans.
Table 7. In vitro antifungal activities (MIC, µg/mL) of compounds 29a, 30a, 31a,dg, and 32a against clinical species of Candida spp. and Cryptococcus neoformans.
Strain
\
Compound
C. albicans 8PC. albicans 8 RC. albicans 604MC. parapsilosis 58LC. utilis 84C. tropicalis 3019C. glabrata 61LC. krusei 432MCryptococcus neoformans
Itraconazole24 h1632320.250.12520.250.50.125
48 h16–3232320.50.5410.50.125
Ketoconazole24 h8880.060.030.250.250.250.03
48 h8880.50.030.50.2510.03
29a24 h8880.511110.25
48 h816322211620.25
30a24 h1632888321160.5
48 h1632161616322320.5
31a24 h0.0154320.1250.1250.50.520.03
48 h432320.1250.250.5240.03
31d24 h3232160.2520.250.2510.25
48 h>3232>32181224
31e24 h3232160.1251610.2541
48 h>3232>320.25162>3288
31f24 h16>3280.25161110.015
48 h16>32160.5162>3220.06
31g24 h8880.250.252210.06
48 h8880.50.254410.06
32a24 h1632320.52214<0.5
48 h32323224848<0.5
Table 8. Comparative results of L-173 and voriconazole on clinical strains from HKI. Presented values are MIC in µg/mL.
Table 8. Comparative results of L-173 and voriconazole on clinical strains from HKI. Presented values are MIC in µg/mL.
StrainStrain-NHKI 12034018,
L-173
VoriconazoleRemark
Candida albicans2016-303<0.016<0.016/0.03Ecninocandin-R (Mut)
Candida auris2019-73128Azol-R
Candida glabrata2018-606>8>8Ecninocandin-R (Mut)
Candida guilliermondii2020-1940.250.125
Candida krusei2017-14420.25
Candida parapsilosisATCC 220190.030.03
Aspergillus fumigatus2020-364>8>8Azol-R (Mut)
Aspergillus fumigatusATCC 20430510.5Azol-S
Fusarium petrolifilum2020-183>8>8
Lomentospora prolificans2020-066>8>8
Rhizopus arrhizus2020-2270.254
Scedosporium apiospermum2020-135>80.5
Table 9. Suppression of C. albicans (strain RCPG Y 1274) growth tube formation in the glands of mice by various doses of compound L-173 (31a) and voriconazole.
Table 9. Suppression of C. albicans (strain RCPG Y 1274) growth tube formation in the glands of mice by various doses of compound L-173 (31a) and voriconazole.
Animal GroupAdministered CompoundDose, mg/kg% Suppression **p ***
1L-173 *522.330.00001
2L-173 *1230.860.00001
3L-173 *2541.040.00001
4Voriconazole *1217.000.00001
D (control)-0
* Due to the poor solubility of compound L-173 and voriconazole, 20% DMSO in water was used as a solvent. ** % inhibition—the proportion of cells that did not form growth tubes; *** p—comparison with voriconazole.
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Levshin, I.B.; Simonov, A.Y.; Panov, A.A.; Grammatikova, N.E.; Alexandrov, A.I.; Ghazy, E.S.M.O.; Ivlev, V.A.; Agaphonov, M.O.; Mantsyzov, A.B.; Polshakov, V.I. Synthesis and Biological Evaluation of a Series of New Hybrid Amide Derivatives of Triazole and Thiazolidine-2,4-dione. Pharmaceuticals 2024, 17, 723. https://doi.org/10.3390/ph17060723

AMA Style

Levshin IB, Simonov AY, Panov AA, Grammatikova NE, Alexandrov AI, Ghazy ESMO, Ivlev VA, Agaphonov MO, Mantsyzov AB, Polshakov VI. Synthesis and Biological Evaluation of a Series of New Hybrid Amide Derivatives of Triazole and Thiazolidine-2,4-dione. Pharmaceuticals. 2024; 17(6):723. https://doi.org/10.3390/ph17060723

Chicago/Turabian Style

Levshin, Igor B., Alexander Yu. Simonov, Alexey A. Panov, Natalia E. Grammatikova, Alexander I. Alexandrov, Eslam S. M. O. Ghazy, Vasiliy A. Ivlev, Michael O. Agaphonov, Alexey B. Mantsyzov, and Vladimir I. Polshakov. 2024. "Synthesis and Biological Evaluation of a Series of New Hybrid Amide Derivatives of Triazole and Thiazolidine-2,4-dione" Pharmaceuticals 17, no. 6: 723. https://doi.org/10.3390/ph17060723

APA Style

Levshin, I. B., Simonov, A. Y., Panov, A. A., Grammatikova, N. E., Alexandrov, A. I., Ghazy, E. S. M. O., Ivlev, V. A., Agaphonov, M. O., Mantsyzov, A. B., & Polshakov, V. I. (2024). Synthesis and Biological Evaluation of a Series of New Hybrid Amide Derivatives of Triazole and Thiazolidine-2,4-dione. Pharmaceuticals, 17(6), 723. https://doi.org/10.3390/ph17060723

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