Phylogenetic Framework, a New Species, and Two New Species Records for China in Rhizopogon
Abstract
1. Introduction
2. Materials and Methods
2.1. Morphological Characteristics Examination
2.2. DNA Extraction, PCR Amplification, and Sequencing
2.3. Phylogenetic Analyses
3. Results
3.1. Molecular Phylogenetics
3.2. Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Appendix A
Species Name | Voucher/Isolation | Origin | GenBank No. of ITS | References |
---|---|---|---|---|
R. evadens | GO-2009-164 | Mexico | KJ595006 | Unpublished |
Uncultured Rhizopogon | ECM | Russia | KJ769300 | [48] |
R. superiorensis | GO-2008-25 | Mexico | KJ595010 | Unpublished |
Uncultured R. roseolus | ECM | Portugal | KF007248 | Unpublished |
Uncultured Rhizopogon | ECM | Portugal | KF007241 | Unpublished |
R. roseolus | KPM-NC0018075 | Japan | KF990475 | [49] |
Uncultured Rhizopogon | ECM | Portugal | KF007261 | Unpublished |
R. roseolus | MA-Fungi 47716 | Spain | AJ810062 | [26] |
R. roseolus | MA-Fungi 47716 | Spain | AJ810063 | [26] |
Uncultured Rhizopogon | ECM | Spain | FJ013089 | Unpublished |
Uncultured Rhizopogon | ECM | Canada | FJ554251 | [50] |
R. roseolus | ECM | Poland | EU379678 | Unpublished |
R. abietis | Trappe 7603 | US | EU837243 | Unpublished |
R. evadens | OSC 63507 | USA | EU837230 | Unpublished |
R. roseolus | ECM | Sweden | HM036649 | [51] |
R. pseudoroseolus | K98C31T213 | New Zealand | GQ267483 | [52] |
R. luteorubescens | K91T310b | New Zealand | GQ267482 | [52] |
R. abietis | OSC: 41455 | USA | KC346843 | Unpublished |
R. fallax | GO-2009-222 | Mexico | KC152186 | Unpublished |
R. fallax | GO-2009-230 | Mexico | KC152199 | Unpublished |
R. fallax | GO-2009-218 | Mexico | KC152195 | Unpublished |
R. evadens | GO-2010-122 | Mexico | KC152181 | Unpublished |
Uncultured fungus | ECM | USA | KC424535 | [53] |
R. luteorubescens | NJDRS16aYSWY | USA | KX833229 | [54] |
R. jiyaozi | YAAS-L2399 | China | KP893836 | [30] |
R. sinoalbidus | YAAS-L2947 | China | KP893818 | [30] |
Uncultured Rhizopogon | 85 | China | LC013778 | [55] |
R. vulgaris | ECM | USA | JN858081 | [56] |
R. bacillisporus | SOC1503 | USA | JN022518 | Unpublished |
Uncultured Rhizopogon | ECM | Mexico | JN704815 | Unpublished |
R. salebrosus | ECM | USA | HQ914333 | [57] |
R. salebrosus | ECM | USA | HQ914332 | [57] |
Uncultured Rhizopogon | ECM | Japan | AB839388 | [58] |
Uncultured fungus | ECM | New Zealand | KM596883 | Unpublished |
R. roseolus | DG68 | UK | JQ888193 | [59] |
Uncultured Rhizopogon | ECM | China | JQ991779 | Unpublished |
R. flavidus | YAAS: L2957 | China | NR_158904 | [30] |
R. sinoalbidus | YAAS: L2949 (Holotype) | China | NR_158905 | [30] |
R. jiyaozi | YAASL: 2929 | China | NR_158906 | [30] |
R. succosus | OSC JMT19321 | USA | AF062933 | [22] |
R. luteolus | OSC JMT22516 | Sweden | AF062936 | [22] |
R. verii | RHILUT_211013C | Germany | LN875266 | [29] |
R. songmaodan | HKAS-106768 | China | MN655984 | [10] |
R. songmaodan | RW_2019a | China | MN846303 | [10] |
R. nigrescens | NAMA 2015-326 | USA | MH910566 | Unpublished |
R. pseudoroseolus | 223 | USA | MK841867 | Unpublished |
R. albidus | 347 | USA | MK841991 | Unpublished |
R. pseudoroseolus | 224 | USA | MK841868 | Unpublished |
Rhizopogon sp. | Trappe 28417; SC 110931 | USA | DQ680181 | Unpublished |
R. subsalmonius | 1SSA-1653 | Spain | AM085530 | Unpublished |
R. subsalmonius | OSC JMT17218 | USA | AF062938 | [22] |
R. albidus | AHS 69642 | USA | AM085519 | Unpublished |
R. evadens | MICH AHS 65484 (Holotype) | USA | AF062927 | [22] |
R. odoratus | AHS 71319 | USA | AM085526 | Unpublished |
R. rocabrunae | 17067 | Spain | JF908761 | [60] |
R. occidentalis | JMT 17564, OSC | USA | AF058305 | [22] |
R. ochraceorubens | MICH AHS 59643 (Holotype) | USA | AF062928 | [22] |
R. flavidus | YAAS-L2957 (Holotype) | China | KP893813 | [30] |
R. flavidus | YAAS-L2956 | China | KP893814 | [30] |
R. subpurpurascens | MICH AHS 65669 (Paratype) | USA | AF062929 | [22] |
R. ellenae | MICH AHS 66137 (Holotype) | USA | AH011350 | [22] |
R. sinoalbidus | YAAS-L2944 | China | KP893816 | [30] |
R. sinoalbidus | YAAS-L2949 (Holotype) | China | KP893820 | [30] |
R. colossus | MICH AHS 49480 (Holotype) | USA | AH011348 | [22] |
R. hawkerae | MICH AHS 68417 (Paratype) | USA | AH011351 | [22] |
R. ochraceisporus | MICH AHS 65963 (Paratype) | USA | AF071439 | [22] |
R. jiyaozi | YAAS-L2335 | China | KP893823 | [30] |
R. jiyaozi | YAASL-2929 (Holotype) | China | KP893830 | [30] |
R. roseolus | JMT 8227, OSC | USA | AF058315 | [22] |
R. burlinghamii | JMT 17882, OSC | USA | AF058303 | [22] |
R. buenoi | MA-Fungi 47676 (Holotype) | Spain | AJ297263 | [61] |
R. boninensis | KPM-NC 26928 | Japan | MK395372 | Unpublished |
R. songmaodan | HKAS-106767 (Holotype) | China | MN655983 | [10] |
R. songmaodan | HKAS-106766 | China | MN655982 | [10] |
R. mohelnensis | IK-00184 | Poland | KX610701 | [62] |
R. rubescens | NS182 | Sweden | DQ068965 | [63] |
R. rubescens | T1PK2 | Sweden | JX907816 | [64] |
R. mohelnensis | 4599 | Spain | ON072209 | [65] |
R. albidus | AHS 69642 | USA | AM085519 | Unpublished |
R. albidus | MICH: 425 | USA | NR_198824 | Unpublished |
R. evadens | MICH: 5448 (Holotype) | USA | NR_198822 | Unpublished |
R. avellaneitectus | MICH: 5434 | USA | NR_198826 | Unpublished |
R. subsalmonius | MICH: 423 | USA | NR_198806 | Unpublished |
R. odoratus | Mycorrhizal root | USA | MK841906 | Unpublished |
R. odoratus | Mycorrhizal root | USA | MK841887 | Unpublished |
R. bacillisporus | OSC: 134671 | USA | KC346846 | Unpublished |
Rhizopogon sp. | TNL1988 | USA | MH878765 | Unpublished |
R. confusus | PRM945153 | Czech | HG999784 | [2] |
R. confusus | PRM879700 | Czech | HG999780 | [2] |
R. songmaodan | rsc-315 | China | MT821479 | [10] |
R. songmaodan | Synthesized ECM of Pinus armandii | China | MN846304 | [10] |
R. songmaodan | Synthesized ECM of P. armandii | China | MN846305 | [10] |
R. songmaodan | HKAS-106770 | China | MN655985 | [10] |
R. songmaodan | HKAS-106769 | China | MN655986 | [10] |
R. songmaodan | HKAS-106765 | China | MN655981 | [10] |
R. evadens | HAY-F-007602 | USA | PQ125058 | Unpublished |
R. evadens | OSC 62146 | USA | KT968587 | Unpublished |
R. evadens | OULU: E.Ohenoja 7505-380 | Spain | ON072206 | [65] |
R. evadens | OULU: O.Kaattari 7131-347 | Spain | ON072211 | [65] |
R. evadens | TB-2010-MEX 26 | Mexico | KC152180 | Unpublished |
R. evadens | GO-2009-323 | Mexico | KC152182 | Unpublished |
R. evadens | HAY-F-007605 | USA | PQ288476 | Unpublished |
R. rubescens | MICH: 607 (Holotype) | USA | NR_119472 | [26] |
R. mohelnensis | PRM 154616 (Holotype) | Czech | AJ810039 | [26] |
R. roseolus | ECM | Sweden | DQ068964 | [63] |
R. luteorubescens | MICH: 5462 | USA | NR_119471 | [26] |
T. pseudocolumella | HKAS131259 | China | KP090064 | Unpublished |
T. pseudocolumella | HKAS131259 | China | KP090063 | Unpublished |
T. pseudocolumella | HKAS95533 | China | OR631922 | Unpublished |
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Species Name | Voucher/Isolation | Origin | GenBank No. of ITS |
---|---|---|---|
R. qujingensis | YNAU2053 | China | PV584203 |
R. evadens | YNAU0620 | China | PV534069 |
R. evadens | YNAU0630 | China | PV534070 |
R. evadens | HKAS95544 | China | PV534016 |
R. evadens | HKAS95545 | China | PV534017 |
R. evadens | YNAU0608 | China | PV534071 |
R. evadens | HKAS95747 | China | PV534027 |
R. evadens | HKAS95746 | China | PV534028 |
R. rubescens | YNAU1771 | China | PV534094 |
R. sinoalbidus | Ectomycorrhiza3117-5 | China | PX368895 |
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Zhang, H.; Li, L.; Zheng, Y.; Pérez-Moreno, J.; Li, Y.; Yu, C.; Yu, F.; Wan, S. Phylogenetic Framework, a New Species, and Two New Species Records for China in Rhizopogon. Diversity 2025, 17, 683. https://doi.org/10.3390/d17100683
Zhang H, Li L, Zheng Y, Pérez-Moreno J, Li Y, Yu C, Yu F, Wan S. Phylogenetic Framework, a New Species, and Two New Species Records for China in Rhizopogon. Diversity. 2025; 17(10):683. https://doi.org/10.3390/d17100683
Chicago/Turabian StyleZhang, Huiwen, Lin Li, Yuhao Zheng, Jesús Pérez-Moreno, Yuenan Li, Chengjin Yu, Fuqiang Yu, and Shanping Wan. 2025. "Phylogenetic Framework, a New Species, and Two New Species Records for China in Rhizopogon" Diversity 17, no. 10: 683. https://doi.org/10.3390/d17100683
APA StyleZhang, H., Li, L., Zheng, Y., Pérez-Moreno, J., Li, Y., Yu, C., Yu, F., & Wan, S. (2025). Phylogenetic Framework, a New Species, and Two New Species Records for China in Rhizopogon. Diversity, 17(10), 683. https://doi.org/10.3390/d17100683