Evaluation of Genetic Variability among Three Pistacia Species Using Internal Transcribed Spacer 1 (ITS1) Marker
Abstract
:1. Introduction
2. Materials and Methods
2.1. Plant Materials
2.2. DNA Extraction
2.3. Amplification and Purification of ITS1 Region of rDNA
2.4. Sequencing and Alignment of ITS Sequences
2.5. Phylogenetic Analysis
3. Results
ITS Amplification and Sequence Comparison
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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N° | Abbreviation | BLAST GenBank Access Number | Species Name |
---|---|---|---|
1 | KJ018023Patl1 | KJ018023 | Pistacia atlantica Desf. |
2 | EF193076Patl2 | EF193076 | Pistacia atlantica Desf. |
3 | EF193077Patl3 | EF193077 | Pistacia atlantica Desf. |
4 | HE652105PatlxPver | HE652105 | P. atlantica × P. vera cultivar BIO200, clone BIO200_5 |
5 | HE652103PatlxPver | HE652103 | P. atlantica × P. vera cultivar BIO200, clone BIO200_3 |
6 | HE652102PatlxPver | HE652102 | P. atlantica × P. vera cultivar BIO200, clone BIO200_2 |
7 | HE652101PatlxPver | HE652101 | P. atlantica × P. vera cultivar BIO200, clone BIO200_1 |
8 | KF664185Paet | KF664185 | Pistacia aethiopica voucher Yi12041(KUN) |
9 | DQ390466Pchi1 | DQ390466 | Pistacia chinensis |
10 | KF664186Pcuc2 | KF664186 | Pistacia cucphuongensis voucher SK Dell 1100(US) |
11 | EF193081Pint1 | EF193081 | Pistacia integerrima voucher Parfitt 54 |
12 | EF193105Pkhi1 | EF193105 | Pistacia khinjuk |
13 | KT956135Plen1 | KT956135 | Pistacia lentiscus L. |
14 | KY549573Plen8 | KY549573 | Pistacia lentiscus L. |
15 | KF664188Pmex1 | KF664188 | Pistacia mexicana voucher Wen8675(US) |
16 | KY549576Pter4 | KY549576 | Pistacia terebinthus L. |
17 | EF193084Ptersubpal4 | EF193084 | Pistacia terebinthus L. |
18 | EF193096Ptersubpal5 | EF193096 | P. terebinthus subsp. palaestina voucher Golan 1.222 clone 1 |
19 | EF193086Pter5 | EF193086 | Pistacia terebinthus voucher Golan 1.350 |
20 | KJ018021Pver2 | KJ018021 | Pistacia vera L. |
21 | KJ018020Pver3 | KJ018020 | Pistacia vera L. |
22 | KJ018022Pver9 | KJ018022 | Pistacia vera L. |
23 | KJ018018Pver4 | KJ018018 | Pistacia vera L. |
24 | AY677201Pver6 | KJ018022 | Pistacia vera L. |
25 | MH447397Pver1 | MH447397 | Pistacia vera L. |
26 | MH447395Pver10 | MH447395 | Pistacia vera L. |
27 | MH447393Pver11 | MH447393 | Pistacia vera L. |
28 | MH444793PverculMaw | MH444793 | Pistacia vera L. |
29 | MH444724PverculMaw | MH444724 | Pistacia vera L. |
30 | MH444689PverculKe | MH444689 | Pistacia vera L. |
31 | EF193089Pver8 | EF193089 | P. vera voucher Wen 7099 clone 1 |
32 | EF193090Pver5 | EF193090 | P. vera voucher Wen 7099 clone 2 |
33 | EF193091Pver7 | EF193091 | P. vera voucher Wen 7099 clone 3 |
34 | KF664190Pwei1 | KF664190 | Pistacia weinmaniifolia |
35 | EF193103Pxsap1 | EF193103 | Pistacia × saportae voucher T10 clone 4 |
36 | KY549571Pxsap5 | KY549571 | Pistacia × saportae |
37 | AY510157Cotcog | AY510157 | Cotinus coggygria |
38 | KP093194Rhchin | KP093194 | Rhus chinensis |
39 | PatlB7 (in this study) | ON026857 | Pistacia atlantica Desf.B7 |
40 | PatlB4 (in this study) | ON026858 | Pistacia atlantica Desf.B4 |
41 | Pter44 (in this study) | ON026856 | Pistacia terebinthus L.44 |
42 | Pter45 (in this study) | ON026855 | Pistacia terebinthus L.45 |
43 | Pvera5 (in this study) | ON026854 | Pistacia vera L.5 |
44 | PVera7 (in this study) | ON026853 | Pistacia vera L.7 |
Type of Site | Number of Sequences |
---|---|
Total number of sites | 248 |
Number of sites retained (C) | 185 (74.60%) |
Number of variable sites (V) | 61 (24.60%) |
Number of informative sites (Pi) (Parsim-info) | 40 (16.13%) |
Number of Singleton sites (S) | 21 (8.47%) |
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Labdelli, A.; De La Herrán, R.; Resentini, F.; Trainotti, L.; Tahirine, M.; Merah, O. Evaluation of Genetic Variability among Three Pistacia Species Using Internal Transcribed Spacer 1 (ITS1) Marker. Diversity 2022, 14, 1051. https://doi.org/10.3390/d14121051
Labdelli A, De La Herrán R, Resentini F, Trainotti L, Tahirine M, Merah O. Evaluation of Genetic Variability among Three Pistacia Species Using Internal Transcribed Spacer 1 (ITS1) Marker. Diversity. 2022; 14(12):1051. https://doi.org/10.3390/d14121051
Chicago/Turabian StyleLabdelli, Amina, Roberto De La Herrán, Francesca Resentini, Livio Trainotti, Mohammed Tahirine, and Othmane Merah. 2022. "Evaluation of Genetic Variability among Three Pistacia Species Using Internal Transcribed Spacer 1 (ITS1) Marker" Diversity 14, no. 12: 1051. https://doi.org/10.3390/d14121051
APA StyleLabdelli, A., De La Herrán, R., Resentini, F., Trainotti, L., Tahirine, M., & Merah, O. (2022). Evaluation of Genetic Variability among Three Pistacia Species Using Internal Transcribed Spacer 1 (ITS1) Marker. Diversity, 14(12), 1051. https://doi.org/10.3390/d14121051