Dietary Polyphenols in Aging: A Systems-Level Perspective on Mitochondrial Quality Control and Microbiome Interactions
Abstract
1. Introduction
2. Hallmarks of Aging
2.1. Genome Instability, Telomere Attrition, and Epigenetic Alterations
2.2. Proteostasis Decline and Autophagy Dysfunction
2.3. Mitochondrial Dysfunction, Cellular Senescence, and Inflammaging
2.4. Nutrient Sensing, Stem Cell Exhaustion, and Intercellular Communication
3. Major Polyphenols with Anti-Aging Activity
3.1. Resveratrol
3.2. Epigallocatechin Gallate (EGCG)
3.3. Curcumin
3.4. Quercetin
4. Molecular Signaling Pathways Regulating Aging
4.1. AMP-Activated Protein Kinase (AMPK)
4.2. Sirtuin Signaling
4.3. Mechanistic Target of Rapamycin (mTOR)
4.4. Nrf2-Mediated Antioxidant Defense
4.5. NF-κB and Inflammatory Signaling
5. Polyphenols and Cellular Senescence
6. Polyphenols and Mitochondrial Quality Control
6.1. Mitochondrial Biogenesis as a Longevity-Associated Adaptive Program
6.2. Mitochondrial Dynamics: Fusion, Fission, and Network Integrity
6.3. Mitophagy as the Critical Elimination Arm of Mitochondrial Quality Control
6.4. Urolithin A and the Proof-of-Concept for Diet–Microbiome–Mitophagy Signaling
6.5. ROS, Mitohormesis, and the Need for Mechanistic Nuance
6.6. Mechanistic Convergence: Why Mitochondrial Quality Control Sits at the Center
7. Polyphenols and the Gut Microbiome in Aging
7.1. Age-Related Microbiome Changes and Inflammaging
7.2. Microbial Metabolism of Polyphenols and Bioactive Metabolites
7.3. Microbiome Remodeling and Systemic Effects
7.4. Inter-Individual Variability and Translational Challenges
8. Therapeutic Potential of Polyphenols in Age-Related Diseases
8.1. Neurodegenerative Diseases
8.2. Cardiovascular Aging
8.3. Metabolic Disorders and Metabolic Aging
8.4. Sarcopenia, Frailty, and Musculoskeletal Aging
8.5. Translational Interpretation
9. Limitations, Challenges, and Future Perspectives
10. Conclusions
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Abbreviations
| AMPK | AMP-activated protein kinase |
| ATP | Adenosine triphosphate |
| ATG | Autophagy-related gene |
| CVD | Cardiovascular disease |
| DNA | Deoxyribonucleic acid |
| EGCG | Epigallocatechin gallate |
| eNOS | Endothelial nitric oxide synthase |
| FOXO | Forkhead box O |
| HO-1 | Heme oxygenase-1 |
| IL | Interleukin |
| IGF-1 | Insulin-like growth factor 1 |
| JNK | c-Jun N-terminal kinase |
| LPS | Lipopolysaccharide |
| MAPK | Mitogen-activated protein kinase |
| MMP | Matrix metalloproteinase |
| mTOR | Mechanistic target of rapamycin |
| mTORC1 | Mechanistic target of rapamycin complex 1 |
| mTORC2 | Mechanistic target of rapamycin complex 2 |
| mtDNA | Mitochondrial DNA |
| mtROS | Mitochondrial reactive oxygen species |
| NF-κB | Nuclear factor kappa B– Nuclear factor kappa B |
| Nrf2 | Nuclear factor erythroid 2–related factor 2 |
| PGC-1α | Peroxisome proliferator-activated receptor gamma coactivator 1-alpha |
| PI3K | Phosphoinositide 3-kinase |
| Rb | Retinoblastoma protein |
| ROS | Reactive oxygen species |
| SASP | Senescence-associated secretory phenotype |
| SCFA | Short-chain fatty acid |
| SIRT | Sirtuin |
| TFEB | Transcription factor EB |
| TNF-α | Tumor necrosis factor-alpha |
| ULK1 | Unc-51-like kinase 1 |
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| Compound | Core Targets | Aging-Related Mechanisms | Hallmarks Relevance | Mitochondrial Relevance | Evidence Level | Key Limitations | Ref. |
|---|---|---|---|---|---|---|---|
| Resveratrol | SIRT1, AMPK, mTOR | Activates SIRT1–PGC-1α signaling and autophagy | Mitochondrial dysfunction; nutrient sensing; inflammaging | Biogenesis, mitophagy | Animal + Human | Low bioavailability | [25,54,55,56] |
| Pterostilbene | SIRT1, AMPK | Modulates oxidative stress–related pathways | Oxidative stress; mitochondrial aging | Mitochondrial protection | Animal | Limited human data | [25,65] |
| EGCG | AMPK, Nrf2, NF-κB | Regulates antioxidant and inflammatory signaling | Oxidative stress; inflammation; mitochondrial dysfunction | Redox regulation | Cell + Animal | Stability issues | [26,57,58,59,60] |
| Catechin | Nrf2 | Supports antioxidant defense | Oxidative stress | Redox homeostasis | Cell | Limited evidence | [57,58] |
| Epicatechin | eNOS, AMPK | Improves vascular and mitochondrial function | Vascular aging | Mitochondrial respiration | Human + Animal | Dose variability | [66] |
| Curcumin | NF-κB, Nrf2, AMPK, mTOR | Modulates inflammation and autophagy | Inflammaging; oxidative stress | Autophagy-mediated turnover | Animal + Human | Poor bioavailability | [27,61,62] |
| Quercetin | PI3K/Akt, mTOR, NF-κB | Senolytic/senomorphic activity | Cellular senescence; SASP | Mitochondrial regulation | Animal + Human | Variability | [28,63,64] |
| Fisetin | PI3K/Akt | Senotherapeutic effects | Senescence; inflammaging | Indirect mitochondrial | Animal | Limited clinical data | [67] |
| Kaempferol | AMPK, Nrf2 | Antioxidant and autophagy modulation | Oxidative stress | Mitochondrial protection | Cell + Animal | Limited in vivo data | [68] |
| Luteolin | SIRT1, Nrf2 | Neuroinflammatory regulation | Brain aging | Neuronal mitochondria | Animal | Limited human data | [69] |
| Apigenin | FOXO | Lifespan signaling | Stress resistance | Indirect mitochondrial | Model organisms | Limited mammalian evidence | [70] |
| Naringenin | AMPK | Metabolic regulation | Metabolic aging | Mitochondrial metabolism | Animal | Limited human data | [71] |
| Naringin | FOXO | Lifespan modulation | Aging pathways | Indirect mitochondrial | Model organisms | Non-mammalian evidence | [72] |
| Anthocyanins | Nrf2, AMPK | Vascular and oxidative regulation | Vascular aging | Mitochondrial protection | Human + Animal | Heterogeneity | [73] |
| Chlorogenic acid | AMPK | Glucose/lipid metabolism | Metabolic aging | Mitochondrial metabolism | Animal + Human | Variable metabolism | [74] |
| Ellagic acid | PPAR-γ | Anti-inflammatory effects | Inflammaging | Microbiome-dependent | Animal | Microbiome variability | [75] |
| Oleuropein | AMPK, mTOR | Autophagy regulation | Autophagy decline | Mitochondrial turnover | Animal | Limited evidence | [76] |
| Hydroxytyrosol | Nrf2, AMPK | Redox signaling | Oxidative stress | Mitochondrial protection | Animal | Limited human data | [76,77] |
| Rosmarinic acid | Nrf2 | Antioxidant pathways | Oxidative stress | Indirect mitochondrial | Cell + Animal | Limited evidence | [78] |
| Urolithin A | PINK1/Parkin | Mitophagy induction | Mitochondrial dysfunction | Direct mitochondrial QC | Human + Animal | Microbiome-dependent | [32,79,80] |
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Yılmaz, A.; Park, H.-J.; Ahn, E.-M.; Bae, J. Dietary Polyphenols in Aging: A Systems-Level Perspective on Mitochondrial Quality Control and Microbiome Interactions. Int. J. Mol. Sci. 2026, 27, 3930. https://doi.org/10.3390/ijms27093930
Yılmaz A, Park H-J, Ahn E-M, Bae J. Dietary Polyphenols in Aging: A Systems-Level Perspective on Mitochondrial Quality Control and Microbiome Interactions. International Journal of Molecular Sciences. 2026; 27(9):3930. https://doi.org/10.3390/ijms27093930
Chicago/Turabian StyleYılmaz, Adnan, Hae-Jin Park, Eun-Mi Ahn, and Jaehoon Bae. 2026. "Dietary Polyphenols in Aging: A Systems-Level Perspective on Mitochondrial Quality Control and Microbiome Interactions" International Journal of Molecular Sciences 27, no. 9: 3930. https://doi.org/10.3390/ijms27093930
APA StyleYılmaz, A., Park, H.-J., Ahn, E.-M., & Bae, J. (2026). Dietary Polyphenols in Aging: A Systems-Level Perspective on Mitochondrial Quality Control and Microbiome Interactions. International Journal of Molecular Sciences, 27(9), 3930. https://doi.org/10.3390/ijms27093930

