Mechanistic Insights into Multiherb Formulations for Antibiotic-Associated Diarrhea: A Systematic Review of Preclinical Studies on Microbiome–Host Interactions
Abstract
1. Introduction
2. Methods
2.1. Search Strategy
2.2. Eligibility Criteria
- Population: In vivo animal models of AAD with no restrictions on species, sex, age, or body weight.
- Intervention: Multiherb formulations (MHF) consisting of two or more distinct medicinal herbs, regardless of the extraction method or dosage.
- Comparison: Control groups receiving drug vehicle, untreated AAD model controls, antibiotic monotherapy, or established positive controls (e.g., probiotics used as an independent comparator arm).
- Outcomes: Quantitative assessment of gut microbiota composition via 16S rRNA sequencing, metagenomic profiling, or targeted molecular assays (e.g., qPCR), reporting diversity indices α and β, and taxonomic shifts.
- Study design: Peer-reviewed controlled in vivo studies with available full-text articles.
- Studies were excluded if they focused exclusively on single chemical compounds, herbal interventions, or probiotic-only treatments.
2.3. Study Selection and Data Extraction
2.4. Assessment of Risk of Bias
2.5. Data Synthesis and Analysis
3. Results
3.1. Study Characteristics and Formulation Composition
3.2. Clustering of Formulations Based on Herbal Composition and Shared Core
3.3. Study-Level Microbiome and Host Outcomes
3.4. Integrated Outcome Patterns Across Formulation Clusters
3.5. Integrated Outcome Patterns: The Microbiome–Host Axis
3.6. Risk of Bias Results
4. Discussion
4.1. Principal Findings
4.2. Interpretation of Cluster-Based Findings
4.3. Integrated Microbiome–Host Response Patterns
4.4. From Competition to Synergy: Rationale for Integrated Herbal–Probiotic Strategies
4.5. Conceptual Framework and Future Directions
4.6. Study Limitations
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- McFarland, L.V. Antibiotic-associated diarrhea: Epidemiology, trends and treatment. Future Microbiol. 2008, 3, 563–578. [Google Scholar] [CrossRef]
- Högenauer, C.; Hammer, H.F.; Krejs, G.J.; Reisinger, E.C. Mechanisms and management of antibiotic-associated diarrhea. Clin. Infect. Dis. 1998, 27, 702–710. [Google Scholar] [CrossRef]
- Mullish, B.H.; Williams, H.R. Clostridium difficile infection and antibiotic-associated diarrhoea. Clin. Med. 2018, 18, 237–241. [Google Scholar] [CrossRef]
- Schubert, A.M.; Sinani, H.; Schloss, P.D. Antibiotic-induced alterations of the murine gut microbiota and subsequent effects on colonization resistance against Clostridium difficile. mBio 2015, 6, e00974. [Google Scholar] [CrossRef]
- Patangia, D.V.; Anthony Ryan, C.; Dempsey, E.; Paul Ross, R.; Stanton, C. Impact of antibiotics on the human microbiome and consequences for host health. MicrobiologyOpen 2022, 11, e1260. [Google Scholar] [CrossRef]
- Kelly, S.A.; Nzakizwanayo, J.; Rodgers, A.M.; Zhao, L.; Weiser, R.; Tekko, I.A.; McCarthy, H.O.; Ingram, R.J.; Jones, B.V.; Donnelly, R.F.; et al. Antibiotic therapy and the gut microbiome: Investigating the effect of delivery route on gut pathogens. ACS Infect. Dis. 2021, 7, 1283–1296. [Google Scholar] [CrossRef]
- Rau, S.; Gregg, A.; Yaceczko, S.; Limketkai, B. Prebiotics and probiotics for gastrointestinal disorders. Nutrients 2024, 16, 778. [Google Scholar] [CrossRef]
- Smolinska, S.; Popescu, F.-D.; Zemelka-Wiacek, M. A review of the influence of prebiotics, probiotics, Synbiotics, and postbiotics on the human gut microbiome and intestinal integrity. J. Clin. Med. 2025, 14, 3673. [Google Scholar] [CrossRef]
- Lee, E.L.; Sidhick, S.T.; Maharajan, M.K.; Shanmugham, S.; Ingle, P.V.; Kumar, S.; Ching, S.M.; Lee, Y.Y.; Veettil, S.K. Probiotics for the prevention of antibiotic-associated diarrhea—An umbrella review of meta-analyses of randomized controlled trials. Eur. J. Clin. Exp. Med. 2025, 23, 237–244. [Google Scholar] [CrossRef]
- Guo, Y.-N.; Wang, J.; Zhang, H.-J.; Jia, H.-B.; Li, P.; Liu, X.-Z. Traditional Chinese medicine QPYF as preventive treatment for Clostridium difficile associated diarrhea in a mouse model. Evid. Based Complement. Altern. Med. 2016, 2016, 3759819. [Google Scholar] [CrossRef]
- Zhou, T.; Zhang, Y.; Li, Z.; Lu, C.; Zhao, H. Research progress of traditional Chinese medicine on the treatment of diarrhea by regulating intestinal microbiota and its metabolites based on renal-intestinal axis. Front. Cell. Infect. Microbiol. 2024, 14, 1483550, Correction in Front. Cell. Infect. Microbiol. 2024, 14, 1524374. https://doi.org/10.3389/fcimb.2024.1524374. [Google Scholar] [CrossRef]
- Che, C.T.; Wang, Z.J.; Chow, M.S.S.; Lam, C.W.K. Herb-herb combination for therapeutic enhancement and advancement: Theory, practice and future perspectives. Molecules 2013, 18, 5125–5141. [Google Scholar] [CrossRef]
- He, L.; Liu, Y.; Guo, Y.; Shen, K.; Hui, H.; Tan, Z. Diversity of intestinal bacterial lactase gene in antibiotics-induced diarrhea mice treated with Chinese herbs compound Qi Wei Bai Zhu San. 3 Biotech 2018, 8, 4. [Google Scholar] [CrossRef]
- Hui, H.; Wu, Y.; Zheng, T.; Zhou, S.; Tan, Z. Bacterial characteristics in intestinal contents of antibiotic-associated diarrhea mice treated with qiweibaizhu powder. Med. Sci. Monit. 2020, 26, e921771. [Google Scholar] [CrossRef]
- Xie, G.Z.; Deng, N.; Zheng, T.; Peng, X.X.; Zhang, S.H.; Tan, Z.J. Total glycosides contribute to the anti-diarrheal effects of Qiwei Baizhu Powder via regulating gut microbiota and bile acids. Front. Cell. Infect. Microbiol. 2022, 12, 945263. [Google Scholar] [CrossRef]
- Li, C.; Xiao, N.; Deng, N.; Li, D.; Tan, Z.; Peng, M. Dose of sucrose affects the efficacy of Qiweibaizhu powder on antibiotic-associated diarrhea: Association with intestinal mucosal microbiota, short-chain fatty acids, IL-17, and MUC2. Front. Microbiol. 2023, 14, 1108398. [Google Scholar] [CrossRef]
- Mao, M.L.; Lin, P.; Xiong, L.L.; Feng, Y.; Shu, Q.L. Changes in Diversity of Intestinal Butyrate-Producing Bacteria during Treatment with Shenling Baizhu San and Lizhong Tang in an AAD Animal Model. Chin. J. Exp. Tradit. Med. Formulae 2021, 27, 23–30. (In Chinese) [Google Scholar]
- Zhang, C.E.; Chen, X.; Zhang, X.Q.; Yu, X.H.; Li, M.; Cui, Y.T.; Ma, Y.Q.; Ma, Z.J. Modulation of Gut Microbiota during Alleviation of Antibiotic-Associated Diarrhea with Lizhong Decoction. Eval. Anal. Drug-Use Hosp. China 2022, 22, 513–519. (In Chinese) [Google Scholar]
- Ahn, H.R.; Park, D.H.; Shin, M.S.; Nguyen, Q.N.; Park, J.Y.; Kim, D.W.; Kang, K.S.; Lee, H.L. The ameliorating effect of Lizhong-Tang on antibiotic-associated imbalance in the gut microbiota in mouse. Appl. Sci. 2022, 12, 6943. [Google Scholar] [CrossRef]
- Rong, X.; Shu, Q. Modulating gut microbiota for treating antibiotic-associated diarrhea from Clostridium difficile infection: Insights from Lizhong decoction and its polysaccharide component. Lett. Appl. Microbiol. 2024, 77, ovae121. [Google Scholar] [CrossRef]
- Su, G.; Yang, G.Y.; Zhang, G.X.; Shen, J.X.; Han, H.Z.; Tian, W.Y.; Wang, W.J.; Wang, P.; Tu, X.H.; He, G.Z. Mechanism of Gegen Qinlian Decoction in the Treatment of Antibiotic-Associated Diarrhea Based on 16S rRNA Sequencing and Network Pharmacology. Mod. Food Sci. Technol. 2023, 39, 11–19. (In Chinese) [Google Scholar]
- Tang, Q.M.; Han, X.; Yang, G.Y.; Chen, R.; Wang, W.J.; Tu, X.H.; Tian, W.Y.; Cai, Y.P.; Chen, C.; He, G.Z. Metagenomics-Based Study on the Mechanism of Gegen Qinlian Decoction in Improving Dysbiosis in a Rat Model of Antibiotic-Associated Diarrhea. Chin. J. Comp. Med. 2024, 32, 1379–1389. (In Chinese) [Google Scholar]
- Yang, L.; Zhang, Q.; Huang, J.; Liu, D.; Lan, Y.; Yuan, L.; Chen, Q. Xianglian Pill ameliorates antibiotic-associated diarrhea by restoring intestinal microbiota and attenuating mucosal damage. J. Ethnopharmacol. 2021, 264, 113377. [Google Scholar] [CrossRef]
- Cui, Y.; Zhang, C.; Zhang, X.; Yu, X.; Ma, Y.; Qin, X.; Ma, Z. Integrated serum pharmacochemistry and metabolomics reveal potential effective components and mechanisms of Shengjiang Xiexin decoction in the treatment of Clostridium difficile infection. Heliyon 2023, 9, e15602. [Google Scholar] [CrossRef]
- Zhang, C.E.; Yu, X.H.; Cui, Y.T.; Wang, H.J.; Chen, X.; Ma, X.J.; Li, H.; Su, J.R.; Ma, Z.J.; Huang, L.Q. Shengjiang Xiexin Decoction ameliorates antibiotic-associated diarrhea by altering the gut microbiota and intestinal metabolic homeostasis. Phytomedicine 2023, 113, 154737. [Google Scholar] [CrossRef]
- Li, X.; Wu, Y.; Xu, Z.; Chen, J.; Li, Y.; Xing, H.; Zhang, X.; Yuan, J. Effects of Hetiao Jianpi decoction on intestinal injury and repair in rats with antibiotic-associated diarrhea. Med. Sci. Monit. 2020, 26, e921745. [Google Scholar] [CrossRef]
- Guo, X.; Yan, Z.; Wang, J.; Fan, X.; Kang, J.; Niu, R.; Sun, Z. Effect of traditional Chinese medicine (TCM) and its fermentation using Lactobacillus plantarum on ceftriaxone sodium-induced dysbacteriotic diarrhea in mice. Chin. Med. 2022, 17, 20. [Google Scholar] [CrossRef]
- Xiao, T.; Yu, X.Z.; Yang, L.P.; Duan, X.H. Mechanism of Butu Yajie Formula in the Treatment of Antibiotic-Associated Diarrhea. World Sci. Technol.—Mod. Tradit. Chin. Med. 2023, 25, 2743–2751. (In Chinese) [Google Scholar]
- Xi, S.M. Development of Zisu Tang Oral Gel and Its Regulatory Effect on Intestinal Microbiota and Intestinal Enzyme Activity. Master’s Thesis, Tianjin University of Traditional Chinese Medicine, Tianjin, China, 2023. (In Chinese) [Google Scholar]
- Makavana, A.; Chotaliya, M. Probiotic interventions in antibiotic-associated diarrhea: Mechanistic insights, therapeutic efficacy, and emerging nanotechnological formulations. EPJ Web Conf. 2026, 348, 01012. [Google Scholar] [CrossRef]
- Hwang, J.H.; Choi, Y.-K. Herbal and natural products for antibiotic-associated diarrhea: A systematic review of animal studies focusing on molecular microbiome and barrier outcomes. Pharmaceuticals 2026, 19, 64. [Google Scholar] [CrossRef]
- Hwang, J.H.; Choi, Y.K. Herbal and natural product interventions in animal models of antibiotic-associated diarrhea and their effects on gut microbiota: A protocol for systematic review. J Pharmacopunct. 2026, 29, 42–47. [Google Scholar] [CrossRef]
- Page, M.J.; McKenzie, J.E.; Bossuyt, P.M.; Boutron, I.; Hoffmann, T.C.; Mulrow, C.D.; Shamseer, L.; Tetzlaff, J.M.; Akl, E.A.; Brennan, S.E.; et al. The PRISMA 2020 statement: An updated guideline for reporting systematic reviews. BMJ 2021, 372, n71. [Google Scholar] [CrossRef]
- Hooijmans, C.R.; Rovers, M.M.; de Vries, R.B.; Leenaars, M.; Ritskes-Hoitinga, M.; Langendam, M.W. SYRCLE’s risk of bias tool for animal studies. BMC Med. Res. Methodol. 2014, 14, 43. [Google Scholar] [CrossRef]
- Zhu, H.; Cao, J.; Liang, X.; Luo, M.; Wang, A.; Hu, L.; Li, R. Polysaccharides from Panax ginseng promote intestinal epithelial cell migration through affecting the Ca2+ related regulators. J. Ginseng Res. 2023, 47, 89–96. [Google Scholar] [CrossRef]
- Wang, J.; Feng, W.; Zhang, S.; Chen, L.; Sheng, Y.; Tang, F.; He, J.; Xu, X.; Ao, H.; Peng, C. Ameliorative effect of Atractylodes macrocephala essential oil combined with panax ginseng total saponins on 5-fluorouracil induced diarrhea is associated with gut microbial modulation. J. Ethnopharmacol. 2019, 238, 111887. [Google Scholar] [CrossRef]
- Tu, Y.; Luo, X.; Liu, D.; Li, H.; Xia, H.; Ma, C.; Zhang, D.; Yang, Y.; Pan, X.; Wang, T.; et al. Extracts of Poria cocos improve functional dyspepsia via regulating brain-gut peptides, immunity and repairing of gastrointestinal mucosa. Phytomedicine 2022, 95, 153875. [Google Scholar] [CrossRef]
- Wan, Y.; Yang, L.; Li, H.; Ren, H.; Zhu, K.; Dong, Z.; Jiang, S.; Shang, E.; Qian, D.; Duan, J. Zingiber officinale and Panax ginseng ameliorate ulcerative colitis in mice via modulating gut microbiota and its metabolites. J. Chromatogr. B 2022, 1203, 123313. [Google Scholar] [CrossRef]
- Xu, J.; Zou, Z.; Li, X.; Sun, X.; Wang, X.; Qin, F.; Abulizi, A.; Chen, Q.; Pan, Z.; Shen, H.; et al. Effect of Gegen Qinlian Decoction on the regulation of gut microbiota and metabolites in type II diabetic rats. Front. Microbiol. 2024, 15, 1429360. [Google Scholar] [CrossRef]
- Hu, Y.; Tang, J.; Xie, Y.; Xu, W.; Zhu, W.; Xia, L.; Fang, J.; Yu, D.; Liu, J.; Zheng, Z.; et al. Gegen Qinlian decoction ameliorates TNBS-induced ulcerative colitis by regulating Th2/Th1 and Tregs/Th17 cells balance, inhibiting NLRP3 inflammasome activation and reshaping gut microbiota. J. Ethnopharmacol. 2024, 328, 117956, Correction in J. Ethnopharmacol. 2025, 352, 119788. https://doi.org/10.1016/j.jep.2025.119788. [Google Scholar] [CrossRef]
- Wang, H.; Lan, Y.; Luo, L.; Xiao, Y.; Meng, X.; Zeng, Y.; Wu, J. The Scutellaria-Coptis herb couple and its active small-molecule ingredient wogonoside alleviate cytokine storm by regulating the CD39/NLRP3/GSDMD signaling pathway. J. Ethnopharmacol. 2024, 329, 118155. [Google Scholar] [CrossRef]
- Li, Q.; Cui, Y.; Xu, B.; Wang, Y.; Lv, F.; Li, Z.; Li, H.; Chen, X.; Peng, X.; Chen, Y.; et al. Main active components of Jiawei Gegen Qinlian decoction protects against ulcerative colitis under different dietary environments in a gut microbiota-dependent manner. Pharmacol. Res. 2021, 170, 105694. [Google Scholar] [CrossRef]
- Zhang, L.; Wu, X.; Yang, R.; Chen, F.; Liao, Y.; Zhu, Z.; Wu, Z.; Sun, X.; Wang, L. Effects of berberine on the gastrointestinal microbiota. Front. Cell. Infect. Microbiol. 2020, 10, 588517. [Google Scholar] [CrossRef]
- Deng, C.; Deng, B.; Jia, L.; Tan, H.; Zhang, P.; Liu, S.; Zhang, Y.; Song, A.; Pan, L. Preventive effects of a Chinese herbal formula, Shengjiang Xiexin decoction, on irinotecan-induced delayed-onset diarrhea in rats. Evid. Based Complement. Altern. Med. 2017, 2017, 7350251. [Google Scholar] [CrossRef]
- Peng, G.; Guan, H.; Wang, X.; Shi, Y. Simultaneous determination of 14 active constituents of Shengjiang Xiexin decoction using ultrafast liquid chromatography coupled with electrospray ionization tandem mass spectrometry. Acta Pharm. Sin. B 2017, 7, 193–201. [Google Scholar] [CrossRef]
- Yu, X.H.; Lv, Z.; Zhang, C.E.; Gao, Y.; Li, H.; Ma, X.J.; Ma, Z.J.; Su, J.R.; Huang, L.Q. Shengjiang Xiexin decoction mitigates murine Clostridium difficile infection through modulation of the gut microbiota and bile acid metabolism. J. Ethnopharmacol. 2024, 320, 117384. [Google Scholar] [CrossRef]
- Tang, L.; Li, X.; Wan, L.; Xiao, Y.; Zeng, X.; Ding, H. Herbal medicines for irinotecan-induced diarrhea. Front. Pharmacol. 2019, 10, 182. [Google Scholar] [CrossRef]
- Ma, Z.J.; Lyu, Z.; Yu, X.H.; Zhang, C.E.; Chen, X. Therapeutic effects of Shengjiang Xiexin decoction on mice infected with Clostridium difficile. Eval. Anal. Drug-Use Hosp. China 2021, 21, 513–517. (In Chinese) [Google Scholar]
- Zhong, J.; Yu, R.; Zhou, Q.; Liu, P.; Liu, Z.; Bian, Y. Naringenin prevents TNF-α-induced gut-vascular barrier disruption associated with inhibiting the NF-κB-mediated MLCK/p-MLC and NLRP3 pathways. Food Funct. 2021, 12, 2715–2725. [Google Scholar] [CrossRef]
- Zmora, N.; Zilberman-Schapira, G.; Suez, J.; Mor, U.; Dori-Bachash, M.; Bashiardes, S.; Kotler, E.; Zur, M.; Regev-Lehavi, D.; Brik, R.B.Z.; et al. Personalized gut mucosal colonization resistance to empiric probiotics is associated with unique host and microbiome features. Cell 2018, 174, 1388–1405.e21. [Google Scholar] [CrossRef]
- Mallon, C.A.; Elsas, J.D.V.; Salles, J.F. Microbial invasions: The process, patterns, and mechanisms. Trends Microbiol. 2015, 23, 719–729. [Google Scholar] [CrossRef]
- Cunningham, M.; Azcarate-Peril, M.A.; Barnard, A.; Benoit, V.; Grimaldi, R.; Guyonnet, D.; Holscher, H.D.; Hunter, K.; Manurung, S.; Obis, D.; et al. Shaping the future of probiotics and prebiotics. Trends Microbiol. 2021, 29, 667–685. [Google Scholar] [CrossRef]
- Fang, X.; Wang, Y.; Wei, H.; Huang, Y. Precision microbiome: A New Era of targeted therapy with core probiotics. Research 2025, 8, 0658. [Google Scholar] [CrossRef]


| Cluster | Study | Formula | Herbal Composition (As Reported) | Animal | AAD Induction | Comparator Arms | Tx Period | Total | Platform |
|---|---|---|---|---|---|---|---|---|---|
| QWBZP-based | [13] | QWBZP | Atractylodes macrocephala, Poria cocos, Codonopsis pilosula, Glycyrrhiza uralensis, Dioscorea opposita, Dolichos lablab, Nelumbo nucifera | KM mouse | Gentamicin + cefradine, 5 d | NC/AAD | 3 d | 8 d | Lactase gene (PCR, cloning) |
| QWBZP-based | [14] | QWBZP | Atractylodes macrocephala, Poria cocos, Glycyrrhiza uralensis, Dolichos lablab, Platycodon grandiflorus, Amomum villosum, Aucklandia lappa | KM mouse | Antibiotic cocktail, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| QWBZP-based | [15] | QWBZP glycosides | Derived from Atractylodes macrocephala, Poria cocos, Glycyrrhiza uralensis, Dolichos lablab, Platycodon grandiflorus, Amomum villosum, Aucklandia lappa | Mouse | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| QWBZP-based | [16] | QWBZP + sucrose | Atractylodes macrocephala, Poria cocos, Glycyrrhiza uralensis, Dolichos lablab, Platycodon grandiflorus, Amomum villosum, Aucklandia lappa | Mouse | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| LZT-based | [17] | LZT | Panax ginseng, Atractylodes macrocephala, Zingiber officinale, Glycyrrhiza uralensis | SD rat | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | Butyrate-related gene (PCR) |
| LZT-based | [18] | LZT | Panax ginseng, Atractylodes macrocephala, Zingiber officinale, Glycyrrhiza uralensis | Rat (♂/♀) | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| LZT-based | [19] | LZT | Panax ginseng, Atractylodes macrocephala, Zingiber officinale, Glycyrrhiza uralensis | Mouse | Antibiotics, 7 d | NC/AAD/Magnolia | 7 d | 14 d | T-RFLP |
| LZT-based | [20] | LZT (polysaccharide) | Derived from Panax ginseng, Atractylodes macrocephala, Zingiber officinale, Glycyrrhiza uralensis | Mouse | AB 7 d + CDI 7 d | NC/AAD | 7 d | 21 d | 16S rRNA sequencing |
| GQT-based | [21] | GQT | Pueraria lobata, Scutellaria baicalensis, Coptis chinensis, Glycyrrhiza uralensis | Rat | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| GQT-based | [22] | GQT | Pueraria lobata, Scutellaria baicalensis, Coptis chinensis, Glycyrrhiza uralensis | Rat | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | Shotgun metagenomics |
| Coptis-containing but non-identical formulations | [23] | Xianglian Pill | Coptis chinensis, Aucklandia lappa | Mouse | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| Coptis-containing | [24] | Shengjiang Xiexin Decoction | Zingiber officinale, Pinellia ternata, Scutellaria baicalensis, Coptis chinensis, Glycyrrhiza uralensis | Mouse | Clostridioides difficile model | NC/AAD | 7 d | 14 d | Metabolomics + microbiome |
| Coptis-containing | [25] | Shengjiang Xiexin Decoction | Zingiber officinale, Pinellia ternata, Scutellaria baicalensis, Coptis chinensis, Glycyrrhiza uralensis | Mouse | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| Other | [26] | Hetiao Jianpi Decoction | Codonopsis pilosula, Atractylodes macrocephala, Poria cocos, Citrus reticulata, Glycyrrhiza uralensis | SD rat | Antibiotics, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| Other multiherb formulations | [27] | TCM ± fermentation | Atractylodes macrocephala, Poria cocos, Glycyrrhiza uralensis, Citrus reticulata (fermented vs. non-fermented) | Mouse | Ceftriaxone, 7 d | NC/AAD/FTCM | 7 d | 14 d | 16S rRNA sequencing |
| Other | [28] | Butuyajie formula | Atractylodes macrocephala, Poria cocos, Glycyrrhiza uralensis, Citrus reticulata | Rat | Lincomycin, 7 d | NC/AAD | 7 d | 14 d | 16S rRNA sequencing |
| Other | [29] | Zisu Tang (gel) | Perilla frutescens, Glycyrrhiza uralensis | Mouse | Lincomycin, 5 d | NC/AAD | 7 d | 12 d | 16S rRNA sequencing |
| Category | Core Botanical Components | Frequency, n (%) | Strategic Role and Rationale |
|---|---|---|---|
| Spleen-Tonifying and Functional Recovery | Atractylodes macrocephala | 12 (70.6%) | Soil Conditioning: Enhancing “Spleen” transformative functions; restoration of digestive enzymes (e.g., Lactase) and nutrient absorption. |
| Panax ginseng/Codonopsis pilosula | 9 (52.9%) | ||
| Poria cocos | 10 (58.8%) | ||
| Warming and Metabolic Regulation | Zingiberis Rhizoma (Dried/Fresh Ginger) | 7 (41.2%) | Thermal Regulation: “Warming the Middle” to counteract antibiotic-induced cold-type functional suppression and restore α-diversity. |
| Heat-Clearing and Pathogen Control | Coptis chinensis | 5 (29.4%) | Detoxification: “Clearing Heat” to eliminate inflammatory “toxins” and inhibit opportunistic pathogens like Proteobacteria. |
| Scutellaria baicalensis | 4 (23.5%) | ||
| Pueraria lobata | 3 (17.6%) | ||
| Qi-Regulating and Barrier Protection | Citri Unshius Pericarpium | 4 (23.5%) | Harmonizing and Protecting: Promoting Qi flow to resolve stagnation, reinforce the mucosal barrier (MUC2), and prevent bacterial translocation. |
| Aucklandia lappa/Agastache rugosa | 3 (17.6%) | ||
| Harmonizing and Trophicity | Glycyrrhiza uralensis | 11 (64.7%) | Coordinating Formulae: “Harmonizing all drugs” and tonifying blood to stabilize the host-microbiome axis and mitigate acute mucosal damage. |
| Cluster | Study | α-Diversity | β-Diversity | Key Taxa Changes (Genus Level When Available) | SCFAs | Barrier-Related Outcomes | Immune/Inflammatory Markers | Enzyme Activity |
|---|---|---|---|---|---|---|---|---|
| QWBZP-based | [13] | ↓ | NR | Lactase activity ↑; lactase gene abundance ↑ | NR | NR | NR | Lactase ↑ |
| QWBZP-based | [14] | ↑ | Shift vs. AAD | Lactobacillus ↑ | NR | NR | NR | NR |
| QWBZP-based | [15] | ↑ | Shift vs. AAD | BA-associated taxa ↑ | NR | NR | NR | NR |
| QWBZP-based | [16] | ↑ | Dose-dependent | SCFA-associated taxa ↑ | Directly measured (GC-MS) ↑ | MUC2 ↑ | IL-17 ↓ | NR |
| LZT-based | [17] | NR | NR | Butyrate-producing bacteria ↑ | NR | NR | NR | NR |
| LZT-based | [18] | ↑ | Shift vs. AAD | Proteobacteria ↓ | NR | Barrier repair | Cytokines ↓ | NR |
| LZT-based | [19] | ↔/↑ | OTU recovery | Firmicutes ↑ | NR | NR | NR | NR |
| LZT-based | [20] | ↑ | Shift vs. CDI | C. difficile ↓; Bacteroidetes ↑ | NR | NR | NR | NR |
| GQT-based | [21] | ↑ | Shift vs. AAD | Beneficial genera ↑ | NR | NR | NR | NR |
| GQT-based | [22] | NR | Functional shift | Functional pathways altered; ARG ↓ | NR | NR | NR | NR |
| Coptis-containing | [23] | ↑ | Clear separation | Lactobacillus ↑ | Directly measured (GC-MS) ↑ | ZO-1 (protein) ↑ | TNF-α ↓ | NR |
| Coptis-containing | [24] | NR | Distinct clustering | Metabolite-associated taxa | NR | NR | NR | NR |
| Coptis-containing | [25] | ↑ | Shift vs. AAD | Metabolic taxa ↑ | NR | NR | Inflammation ↓ | NR |
| Other | [26] | ↑ | Shift vs. AAD | Bacteroides ↑ | NR | NR | NR | NR |
| Other | [27] | ↑ | FTCM > TCM | Lactobacillus ↑ | NR | ZO-1, Occludin (mRNA) ↑ | NR | NR |
| Other | [28] | ↑ | Shift vs. AAD | Firmicutes ↑ | NR | Bacterial translocation ↓; DAO ↓; LPS ↓ | MPO ↓ | NR |
| Other | [29] | ↑ | Gel > decoction | Proteobacteria ↓; Lactase ↑ | NR | NR | NR | Sucrase ↑ |
| Outcome Domain | QWBZP-Based (n = 4) | Lizhong-Based (n = 4) | GQT-Based (n = 2) | Coptis-Containing (n = 3) | Other Multiherb (n = 4) |
|---|---|---|---|---|---|
| α-diversity | ↑ in 3/4; ↓ in 1/4 [13] | ↑ (recovery) in 3/4; NR in 1/4 | ↑ (recovery) in 1/2; NR in 1/2 | ↑ (recovery) in 2/3; NR in 1/3 | ↑ (recovery) in 4/4 |
| β-diversity | Shift vs. AAD (2/4); NR (2/4) | Restored in 3/4; NR in 1/4 | Restored in 2/2 | Distinct clustering (3/3) | Shift vs. AAD (4/4) |
| Key taxa (genus-level when available) | Lactobacillus ↑ (3/4); Lactase-pos. bacteria ↑ [13] | Firmicutes ↑ (2/4); Proteobacteria ↓ (2/4) | Beneficial genera ↑ [21]; Functional shift (1/2) | Lactobacillus ↑ (2/3); Metabolic taxa ↑ (2/3) | Firmicutes ↑ (3/4); Proteobacteria ↓ (3/4) |
| SCFA (direct measurement) | NR (4/4) | NR (4/4) | NR (2/2) | Measured (GC-MS) in 1/3 [23] | Measured (GC-MS) in 1/4 [16] |
| Barrier-related outcomes | NR (4/4) | Barrier repair (1/4 [18]); NR in 3/4 | NR (2/2) | ZO-1/Occludin ↑ (2/3); NR in 1/3 | Bacterial translocation ↓ [28] |
| Immune/inflammatory markers | NR (4/4) | Cytokines ↓ (1/4 [18]); NR in 3/4 | NR (2/2) | TNF-α ↓; IL-17 ↓ (2/3); NR in 1/3 | MPO ↓ (1/4 [28]); NR in 3/4 |
| Digestive enzyme activity | Lactase ↑ (1/4 [13]); NR in 3/4 | NR (4/4) | NR (2/2) | NR (3/3) | Sucrase/Lactase ↑ (1/4 [29]); NR in 3/4 |
| Analytical platform | Functional restoration of digestion | Microbiota rebalancing and metabolism | Anti-inflammatory and metabolic regulation | Mucosal and immune modulation | Broad dysbiosis correction |
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Hwang, J.H.; Choi, Y.-K. Mechanistic Insights into Multiherb Formulations for Antibiotic-Associated Diarrhea: A Systematic Review of Preclinical Studies on Microbiome–Host Interactions. Int. J. Mol. Sci. 2026, 27, 3663. https://doi.org/10.3390/ijms27083663
Hwang JH, Choi Y-K. Mechanistic Insights into Multiherb Formulations for Antibiotic-Associated Diarrhea: A Systematic Review of Preclinical Studies on Microbiome–Host Interactions. International Journal of Molecular Sciences. 2026; 27(8):3663. https://doi.org/10.3390/ijms27083663
Chicago/Turabian StyleHwang, Ji Hye, and You-Kyung Choi. 2026. "Mechanistic Insights into Multiherb Formulations for Antibiotic-Associated Diarrhea: A Systematic Review of Preclinical Studies on Microbiome–Host Interactions" International Journal of Molecular Sciences 27, no. 8: 3663. https://doi.org/10.3390/ijms27083663
APA StyleHwang, J. H., & Choi, Y.-K. (2026). Mechanistic Insights into Multiherb Formulations for Antibiotic-Associated Diarrhea: A Systematic Review of Preclinical Studies on Microbiome–Host Interactions. International Journal of Molecular Sciences, 27(8), 3663. https://doi.org/10.3390/ijms27083663

