Compartment-Specific Mitochondrial Proteomic Alterations in Rat Hippocampus Following Chronic Social Isolation Stress
Abstract
1. Introduction
2. Heterogeneity of Neuronal Mitochondria Across Subcellular Compartments
3. CSIS-Associated Changes in the Hippocampal NSM Proteome
3.1. Pyruvate Metabolism and TCA Cycle Alterations in NSM
3.2. Alterations in the NSM Electron Transport Chain and ATP Synthase
| Respiratory Complex | Protein | Stress Model/ Brain Region | Expression Change | Technique | Key Finding | References |
|---|---|---|---|---|---|---|
| Complex I (NADH dehydrogenase) | NDUFS1/NDUFS3 | Sleep deprivation; mouse; hippocampus | ↓ | WB | Reduced NDUFS3 and decreased Complex I activity | [93] |
| NDUFS1/UQCRFS1 | CSIS; rat; PFC; NSM | ↑ | LC-MS/MS | Adaptive mitochondrial response to increased energy demand | [15] | |
| NDUFA2/NDUFS3/NDUFA13 | AD; human brain frontal cortex mitochondria; late-onset | ↓ | iTRAQ-based proteomics | Downregulation of subunits in the late-onset AD | [94] | |
| NDUFA13 | Human MDD; DLPFC | ↑ | 1D-LC-MS | Altered mitochondrial Complex I function and disrupted brain energy metabolism associated with depression and psychotic symptoms | [95] | |
| NDUFA2 | AD; human brain frontal cortex mitochondria; early-onset | ↓ | iTRAQ-based proteomics | Significant reduction in Complex I subunit in early-onset AD | [94] | |
| NDUFA2/NDUFV3 | CMS; rat; cerebellum | ↓ | iTRAQ-based proteomics | Downregulation linked to mitochondrial dysfunction | [71] | |
| NDUFV1/NDUFS1/NDUFV2 | Schizophrenia and PPD; human brain | ↑ | RT-qPCR | NDUFV2 upregulated in schizophrenia—opposite to depression findings | [96] | |
| NDUFV2/NDUFS2/NDUFS3 | CMS; rat; hippocampal synaptosomes | ↓/↑/↑ | iTRAQ-based proteomics | Abnormal activity of hippocampal synaptic mitochondria-related OXPHOS pathways in CMS susceptible rats | [97] | |
| NDUFS3 | CMS; rat; whole hippocampal lysate (Dep-Sus/Anx-Sus/Insus) | ↑/↑/↔ | iTRAQ-based proteomics | Dep-sus ↑; Anx-sus ↑; Insus ↔ | [69] | |
| NDUFS3 | STZ-induced type-1 diabetic rat; forebrain mitochondria | ↓ | 2D-HPLC-ESI-MS/MS | Reduced catalytic activity of Complex I | [98] | |
| Complex II (Succinate dehydrogenase) | SDHB | HAB/LAB mouse lines; cingulate cortex; synaptosomes | ↑ | LC-MS/MS | ↑ HAB/LAB ratio contributes to pathophysiology of anxious phenotype in HAB mice | [99] |
| SDHB | SI-induced anxiety; mouse; hippocampal mitochondria | ↓ | Enzyme activity | ~52% decrease in SDHB activity vs. control | [100] | |
| Complex III (Cytochrome bc1) | CYC1 | Rat zinc-deficiency depression-like model; PFC | ↑ | LC-MS/MS | Impaired mitochondrial respiration and energy metabolism in models of depression and zinc deficiency | [101] |
| UQCRFS1/CYC1 | HAB/LAB mouse lines; cingulate cortex synaptosomes | ↑ | LC-MS/MS | Upregulation of OXPHOS complexes as a general characteristic of the anxious brain | [99] | |
| Complex IV (Cytochrome c oxidase) | MT-CO2 (COX2) | CMS; rat; cerebellum | ↑ | iTRAQ-based proteomics | Upregulation linked to mitochondrial respiratory chain disruption | [71] |
| COX4I1/COX5A | CMS; hippocampal synaptosomes | ↑ | iTRAQ-based proteomics | Increased expression in CMS-susceptible animals | [97] | |
| COX4I1/COX5B | Human MDD; DLPFC | ↑ | 1D SDS-LC-MS | An attempt by mitochondria to compensate for respiratory chain dysfunction caused by oxidative stress | [95] | |
| COX4I1/COX2 | Rat zinc-deficiency depression-like model; PFC | ↑/↑ | LC-MS/MS | Adaptive response of neurons to maintain energy metabolism under zinc deficiency | [101] | |
| COX5A/COX5B | CMS; rat; hippocampus | ↑ | iTRAQ-based proteomics | Increased in stress-resilient rats as part of a stress-protection mechanism | [102] | |
| COX5A | Schizophrenia; post-mortem frontal cortex | ↓ | LC-MS | Reduced mitochondrial oxidative respiration | [103] | |
| COX6B1 | I/R; rat; hippocampal neurons | ↑ | WB | Protection of hippocampal neurons from I/R-induced injury by enhancing Complex IV function and reducing apoptosis | [104] | |
| Complex I/II/IV | SI; mouse; PFC lysate | ↓ | WB; enzyme activity, ELISA | Changes in ETC indicate impaired mitochondrial energy metabolism | [105] | |
| ATP5F1B/ATP5F1D | CSIS-resilient vs. control rats; PFC; synaptosomes | ↓ | LC-MS/MS | Downregulation suggests diminished mitochondrial ATP synthesis capacity in resilient rats | [106] | |
| Complex V (ATP synthase) | ATP5F1A/ATP5F1B | CSIS-resilient vs. CSIS-susceptible rats; NSM; hippocampus | ↑ | 1D-LC-MS/MS | Strengthening OXPHOS capacity to support the high energy demands required for stress adaptation | [66,67] |
| ATP5F1A | CSIS-resilient vs. control rats; NSM; hippocampus | ↑ | 1D-LC-MS/MS | Improved energy supply | [66,67] | |
| Energy Metabolism | ATP levels | SI; rat/mouse; NAc; hippocampus, PFC, | ↓ | Biochemical assays | Reduced ATP levels across brain regions | [90,100] |
3.3. Alterations in NSM Transport Proteins
3.4. CSIS-Induced Changes in NSM Chaperones
3.5. Dysregulation of Structural and Translational Proteins in NSM
3.6. Increased MAO-A Protein Levels
4. CSIS-Associated Changes in the Hippocampal Synaptosome Proteome
4.1. Adaptive Mitochondrial Responses in Synaptosomes: ATP8 and Chaperone Upregulation
4.2. Modulation of Synaptosome Kinases and Phosphatases
4.3. Cytoskeletal Remodeling in Synaptosomes
4.4. Coordinated Regulation of Synaptic Protein Synthesis and Degradation
4.5. Vesicle Trafficking and Synaptic Vesicle Recycling
5. Conclusions
Supplementary Materials
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Feature | Synaptic Mitochondria | Non-Synaptic Mitochondria (NSM) | References |
|---|---|---|---|
| OXPHOS subunits | Reduced expression (Complexes I, II, IV; COX4I2 exception with higher expression) | Higher/stable expression across OXPHOS complexes | [34] |
| ATP production | Lower per mitochondrion; requires higher mitochondrial density at synaptic terminals | Higher/stable ATP output per mitochondrion | [34] |
| Fission/fusion balance | Increased fission (DNM1L ↑), reduced fusion (OPA1 ↓, MFN1/2 ↓); enhanced fragmentation | Balanced fission–fusion dynamics | [34] |
| Calcium handling | MCU ↓, MICU1 ↓; more sensitive to Ca2+ overload | Robust MCU/MICU1 expression; better Ca2+ regulation | [27,34,40,41] |
| Susceptibility to oxidative/ nitrosative stress | High; sensitive to ROS/RNS and lipid peroxidation | Low; more resistant to oxidative challenge | [39,42] |
| mtDNA maintenance | TFAM ↓; increased mtDNA deletions, reduced transcription | TFAM maintained; stable mtDNA | [34,43] |
| MAO-A | Present at synaptic terminals, MAO-A catabolizes norepinephrine, serotonin, and dopamine, generating H2O2. Despite its relatively low abundance in dopaminergic neurons, its oxidative contribution is disproportionate, as it synergizes with the limited local antioxidant capacity to cause oxidative damage | The predominant MAO isoform in neuronal cell bodies and astrocytes, responsible for extracellular serotonin and norepinephrine clearance. H2O2 generated by astrocytic MAO-A is effectively buffered by glial antioxidant systems, contributing to physiological redox signaling rather than oxidative damage | [44,45,46,47,48] |
| MAO-B | Predominant at dopaminergic synaptic terminals, catabolizing dopamine, phenylethylamine, and benzylamine with the highest specific activity in synaptosomal fractions. Anchored to the outer mitochondrial membrane, MAO-B oxidizes substrates via a FAD-dependent mechanism, generating H2O2 as a byproduct | Enriched in astrocytic and serotonergic NSM, MAO-B operates at lower activity than at synaptic terminals. However, chronic low-level H2O2 production may cumulatively erode glial antioxidant reserves over time | [44,47,48,49,50] |
| Functional consequence | Vulnerable to energy failure; compromised synaptic plasticity and neuronal integrity | Resilient; preserved energy homeostasis | [34,39,43] |
| Protein/ Function | Stress Model/Brain Region | Expression Change | Technique | Key Finding | References |
|---|---|---|---|---|---|
| DLAT Dihydrolipoyllysine-residue acetyltransferase (PDC E2) | Prenatal stress; rat frontal cortex; total mitochondria | ↑ | 2D-LC-MS/MS | Fluoxetine may positively modulate mitochondrial energetics via the pyruvate dehydrogenase pathway | [65] |
| CSIS-resilient vs. control rats; hippocampus; NSM | ↑ | 1D-LC-MS/MS | Enhanced capacity to channel glycolytic intermediates into the TCA cycle, increasing substrate availability for energy production | [66,67] | |
| Fluoxetine-treated control vs. control rats; hippocampus; NSM; | ↑ | 1D-LC-MS/MS | Fluoxetine directs energy metabolism towards the citric acid cycle and oxidative phosphorylation | [68] | |
| CSIS; rat; PFC; NSM | ↓ | LC-MS/MS | An adaptive response of the cells to increased energy demands | [15] | |
| CMS–depression-susceptible, anxiety-susceptible, stress-resilient (insusceptible) rats; whole hippocampal lysate | ↑ all groups; WB confirmed in insusceptible rats | iTRAQ-based proteomics | Western blot-confirmed upregulation of DLAT in the insusceptible group, despite the iTRAQ trend observed across all groups, highlights DLAT as a specific molecular marker of stress resilience | [69] | |
| DLD Dihydrolipoyl dehydrogenase (PDC E3/OGDHC/BCKDHC) | Fluoxetine-treated control vs. control rats; hippocampus; NSM | ↑ | 1D-LC-MS/MS | Fluoxetine directs energy metabolism towards the citric acid cycle and oxidative phosphorylation | [68] |
| CMS–depression-susceptible; anxiety-susceptible; stress-resilient rats; whole hippocampal lysate | ↑ all groups; WB: anxiety-Sus. | iTRAQ-based proteomics | Enhanced flux of pyruvate into the TCA cycle as a metabolic signature of anxiety | [69] | |
| DLST Dihdrolipoamide S-succinyltransferase (OGDHC-E2) | Simulated microgravity; tail suspension; rat; hippocampus; mitochondria | ↑ | TMT-based LC-MS/MS | Represents a potential mechanism of cognitive impairment under spaceflight conditions | [70] |
| CMS; rat; cerebellum | ↑ | iTRAQ-based proteomics | Compensatory response to the energy deficit induced by depression | [71] | |
| OGDH 2-Oxoglutarate dehydrogenase E1 (OGDHC E1) | CMS–depression-susceptible; anxiety-susceptible; stress-resilient rats; whole hippocampal lysate | ↑ OGDHL, stress-insusceptible rats, confirmed by WB | iTRAQ-based proteomics | OGDHL, a homolog of OGDH, upregulated in stress-resilient rats, upregulation of the TCA cycle as a signature of resilience | [69] |
| OGDHC inhibition model (SP/TESP); rat; cerebral cortex | Biphasic | Enzyme activity assay (spectrophotometric) | Biphasic response of the rat brain to progressive OGDH inhibition; compensatory OGDHC upregulation at low inhibitor doses, while higher doses disrupted the glutathione redox state and elevated anxiety-like behavior | [72] | |
| Simulated microgravity; tail suspension; rat; hippocampus; mitochondria | ↑ | TMT- based-LC-MS/MS | OGDHC pathway upregulated as part of coordinated TCA activation (including ACO2, CS) | [70] | |
| CS Citrate synthase | Simulated microgravity; tail suspension; rat; hippocampus; mitochondria | ↑ | TMT- based-LC-MS/MS | CS upregulated, TCA activation under microgravity stress | [70] |
| mTBI/sTBI (closed-head impact acceleration); rat whole brain | ↓ (sTBI) after 48 and 120 h post injury | ELISA kits | Reflects the progressive collapse of mitochondrial energetics as part of secondary brain injury | [73] | |
| CMS; rat; cerebellum | ↑ | iTRAQ-based proteomics | TCA cycle enzymes generally upregulated in CMS cerebellum, compensatory response to energy deficit | [71] | |
| MDH2 Malate dehydrogenase | CSIS vs. control rats; hippocampus; synaptosome | ↑ | 1D-LC-MS/MS | Enhanced mitochondrial TCA cycle capacity | [74] |
| Oxidative stress; HT22 hippocampal neurons; in vitro; H2O2 | ↑ | Spectrophotometric, RT-qPCR | MDH2 activity and mRNA upregulated via miR-743a under H2O2-induced oxidative stress | [75] | |
| GOT2 Aspartate amino transferase | CSIS-resilient vs. susceptible; rat; hippocampus; NSM | ↓ (resilient) | 1D-LC-MS/MS | Reduced amino acid-mediated anaplerotic TCA replenishment, favoring direct glycolytic–oxidative energy flux, underlies stress resilience | [66,67] |
| Protein (Mitochondrial Localization) | Stress Model/Brain Region | Expression Change | Technique | Key Finding | Reference |
|---|---|---|---|---|---|
| TOM70 (OMM) | Fluoxetine-treated control rats; hippocampus; NSM | ↑ | 1D-LC-MS/MS | Increased mitochondrial protein import and adaptive mitochondrial remodeling after antidepressant treatment | [68] |
| VDAC1 (OMM) | CSDS; mouse; hippocampal microglia | ↑ | Immunofluorescence | Upregulation of VDAC1 associated with mitochondrial stress and depressive-like behavior | [114] |
| VDAC1/VDAC2 (OMM) | Zinc-deficient rats; PFC | ↑/↑ | LC-MS/MS | Altered mitochondrial membrane permeability and metabolic dysfunction | [101] |
| VDAC2 (OMM) | CSIS; PFC; NSM | ↑ | LC-MS/MS | Upregulation VDAC2 indicates metabolic adaptation to chronic stress | [15] |
| VDAC1 (OMM)/ PiC (IMM) | CSIS; rat; hippocampus; synaptosomal mitochondria | ↓/↓ | LC-MS/MS | Downregulation in CSIS-resilient vs. CSIS-susceptible (VDAC1, PiC) and CSIS-resilient vs. control (VDAC1) rats suggests altered mitochondrial transport linked to stress resilience | [74] |
| VDAC2 (OMM)/ PiC (IMM) | CSIS; rat; hippocampus; NSM | ↓/↑/↓ | LC-MS/MS | Differential regulation (CSIS-resilient vs. CSIS-susceptible VDAC2 ↓, PiC ↑ and CSIS-resilient vs. control PiC ↓) indicates mitochondrial metabolic adaptation between resilient and susceptible/control rats | [66] |
| PiC (IMM) | CMS; rat; hippocampus | ↑ | iTRAQ-based proteomics | Upregulation in CMS-insusceptible rats suggests adaptive mitochondrial phosphate transport | [69] |
| PiC (IMM)/VDAC2 (OMM) | CSIS-resilient vs. CSIS-susceptible rats; hippocampus; NSM | ↑/↓ | 1D-LC-MS/MS | Enhanced mitochondrial energy metabolism and reduced mitochondrial permeability compared with stress-susceptible animals | [66] |
| ANT1/ANT2 (IMM) | CMS; rat; hippocampus; depression- and anxiety-susceptible and insusceptible rats | ↑ | iTRAQ-based proteomics | Altered mitochondrial ATP/ADP exchange and energy metabolism in depression-susceptible rats | [69] |
| 2-OGC (IMM) | Human ischemic brain | ↓ | iTRAQ-based proteomics | Downregulation of 2-OG transport protein levels suggests impaired metabolic coupling | [115] |
| 2-OGC/PiC (IMM) | CMS; rat; hippocampal synaptosome (synaptic mitochondria) | ↔/↑ | iTRAQ-based proteomics | Significant changes in synaptic mitochondrial proteins implying disruption of oxidative phosphorylation and transport systems | [97] |
| GC1 (IMM) | Mouse cortex; MitoQ responders vs. non-responders | ↓ | WB | Downregulation associated with anxiolytic response to mitochondrial antioxidant treatment | [116] |
| SFXN-1 (IMM) | Alzheimer’s disease; brain cortex | ↓ | iTRAQ-based proteomics | Disrupted mitochondrial amino-acid metabolism | [117] |
| SFXN-3 (IMM) | Sfxn3-KO mice brain synaptosomes | Dysregulated | TMT- LC-MS/MS | Regulates levels of proteins known to be associated with neurodegeneration and cell death pathways | [118] |
| Protein | Stress Model/Brain Region | Expression Change | Technique | Key Finding | Reference |
|---|---|---|---|---|---|
| HSP60 (HSPD1) | Microglia-specific KO mice; whole brain | ↓ (KO) | Nano-LC–MS/MS | Loss of HSP60 induces depression-like behavior, synaptic loss, and microglial overactivation → impaired glutamatergic signaling | [126] |
| HSP60 (HSPD1) | Social defeat stress; mouse; hippocampus | ↓ | WB | Downregulation of hippocampal HSP105 is associated with depression-like phenotype | [124] |
| HSP60 (HSPD1)/HSP10 (HSPE1) | CSIS-resilient vs. control rats; hippocampus; NSM | ↓ | 1D-LC-MS/MS | Reduced mitochondrial stress response and more efficient protein folding observed in CSIS-resilient rats | [66] |
| HSP10 (HSPE1) | Inferred from mitochondrial proteostasis impairment; not directly measured | ↓ | Indirect evidence | HSP60 deficiency causes downregulation of mitochondrial proteome, implying HSPE1 dysfunction in stress conditions | [127] |
| HSP90-β (HSP90AB1) | CMS; rat; hippocampus, mRNA | ↑ | RT-qPCR | Upregulated as part of an adaptive stress response; linked to neuroprotection and enhanced protein folding capacity | [125] |
| HSP90-α (HSP90AA1) | Human MDD (non-psychotic); DLPFC | ↑ | 1D-LC-MS | Stress-induced protein folding response | [95] |
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Filipović, D. Compartment-Specific Mitochondrial Proteomic Alterations in Rat Hippocampus Following Chronic Social Isolation Stress. Int. J. Mol. Sci. 2026, 27, 3386. https://doi.org/10.3390/ijms27083386
Filipović D. Compartment-Specific Mitochondrial Proteomic Alterations in Rat Hippocampus Following Chronic Social Isolation Stress. International Journal of Molecular Sciences. 2026; 27(8):3386. https://doi.org/10.3390/ijms27083386
Chicago/Turabian StyleFilipović, Dragana. 2026. "Compartment-Specific Mitochondrial Proteomic Alterations in Rat Hippocampus Following Chronic Social Isolation Stress" International Journal of Molecular Sciences 27, no. 8: 3386. https://doi.org/10.3390/ijms27083386
APA StyleFilipović, D. (2026). Compartment-Specific Mitochondrial Proteomic Alterations in Rat Hippocampus Following Chronic Social Isolation Stress. International Journal of Molecular Sciences, 27(8), 3386. https://doi.org/10.3390/ijms27083386

