A Global Analysis of the Complex Structural Organization of KCTD Proteins and Their Functional Implications
Abstract
1. KCTD Proteins and Their Molecular Organizations
2. Experimental and Classical Molecular Modeling Structural Studies
3. Machine-Learning-Based Predictive Approaches
4. Hetero-Oligomers Formed by KCTD
5. Concluding Remarks and Perspectives
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Cluster | Protein | UniProtKB | Domains (Residue Range) | Predicted Model |
|---|---|---|---|---|
| 1A | KCTD8 | Q6ZWB6 | BTB (44–145) H1 (205–322) H2 (435–473) | ![]() |
| KCTD12 | Q96CX2 | BTB (33–131) H1 (206–325) | ![]() | |
| KCTD16 | Q68DU8 | BTB (25–123) H1 (162–280) H2 (390–428) | ![]() | |
| 4 | KCTD19 | Q17RG1 | BTB1 (13–107) BTB2 (172–258) Srp-like (283–372) BTB3 (396–487) DOM (757–926) | ![]() |
| 7 | KCTD3 | Q9Y597 | BTB (18–115) β-Propeller-like (182–597) | ![]() |
| SHKBP1 | Q8TBC3 | BTB (19–118) β-Propeller-like (196–584) | ![]() | |
| - | KCTD9 | Q7L273 | Ubq-like (1–72) BTB (89–191) β-Solenoid-like (199–380) | ![]() |
| Cluster | Protein | Domain/Complex | PDB Entry | Released | Resolution (Å) | KCTD Residue Range | Oligomeric State | Reference |
|---|---|---|---|---|---|---|---|---|
| 1A | KCTD8 | H1 | 6G57 | 2019 | 2.80 | 201–322 | Tetramer | Pinkas et al. To be published. |
| KCTD12 | H1 | 6QZL | 2019 | 1.98 | 202–325 | Pentamer | ||
| H1/Gβ1γ2 | 6M8S | 2019 | 3.71 | 200–325 | Pentamer (H1) Pentadecamer (complex) | [50] | ||
| KCTD16 | BTB | 5A15 | 2015 | 2.76 | 16–133 | Open pentamer | [51] | |
| 6I0Q | 2019 | 2.30 | 22–124 | Hexamer | [52] | |||
| 6OCT | 2019 | 2.80 | 22–134 | Open pentamer | [53] | |||
| 6OCR | 2019 | 2.28 | 22–134 | Open pentamer | ||||
| BTB/ GABAB2R peptide | 6OCP | 2019 | 2.35 | 22–134 | Open pentamer (BTB) Octadecamer (complex) | |||
| BTB/ GABAB2R peptide | 6M8R | 2019 | 3.20 | 23–124 | Open pentamer (BTB) Hexameric (complex) | [50] | ||
| H1 | 6QB7 | 2019 | 2.23 | 126–286 | Pentamer | Pinkas et al. To be published. | ||
| 1B | KCTD1 | BTB | 5BXB | 2015 | 2.17 | 29–132 | Pentamer | [54] |
| 5BXD | 2015 | 1.80 | 29–132 | Open pentamer | ||||
| FL | 6S4L | 2020 | 2.42 | 28–257 | Pentamer | [55] | ||
| 9FOI | 2025 | 2.71 | 1–257 | Pentamer | ||||
| 9FQ1 | 2025 | 2.60 | 1–257 | Pentamer | [56] | |||
| KCTD15 | BTB | 8PNM | 2024 | 1.94 | 52–165 | Hexamer | [11] | |
| 8PNR | 2024 | 2.25 | 51–165 | Hexamer | ||||
| 3 | KCTD5 | BTB | 3DRZ | 2009 | 1.90 | 40–145 | Pentamer | [57] |
| FL | 3DRX | 2009 | 3.11 | 34–234 | Pentamer | |||
| 3DRY | 2009 | 3.30 | 34–234 | Pentamer | ||||
| CTD/ Gβ1γ2 | 8JKB | 2023 | 3.27 | 153–211 | Pentamer (CTD) Pentadecamer (complex) | [58] | ||
| 8U7Z | 2023 | 2.97 | 152–234 | Pentamer (CTD) Pentadecamer (complex) | [59] | |||
| BTB/ Cul3(NTD) | 8U80 | 2023 | 3.60 | 40–153 | Pentamer (BTB) Decamer (complex) | |||
| FL/Cul3/ Gβ1γ2 | 8U81 | 2023 | 3.82 | 40–234 | Pentamer (CTD) 20-mer (complex) | |||
| 8U82 | 2023 | 3.84 | 40–234 | Pentamer (CTD) 20-mer (complex) | ||||
| 8U83 | 2023 | 3.98 | 40–234 | Pentamer (CTD) 20-mer (complex) | ||||
| 8U84 | 2023 | 3.88 | 40–234 | Pentamer (CTD) 20-mer (complex) | ||||
| KCTD17 | BTB | 5A6R | 2015 | 2.85 | 13–124 | Pentamer | [51] | |
| 5B | KCTD7 | FL/Cul3 | 8I79 | 2023 | 2.80 | 1–289 | Pentamer (KCTD) Decamer (complex) | [58] |
| 6 | KCTD10 | BTB | 5FTA | 2016 | 2.64 | 26–135 | Tetramer | [51] |
| KCTD13 | BTB | 4UIJ | 2015 | 2.70 | 27–144 | Tetramer | ||
| 7 | SHKBP1 | BTB | 4CRH | 2014 | 1.72 | 18–120 | Monomer | |
| - | KCTD9 | BTB | 5BXH | 2015 | 2.76 | 89–191 | Pentamer | [54] |
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Balasco, N.; Esposito, L.; Di Micco, S.; Vitagliano, L. A Global Analysis of the Complex Structural Organization of KCTD Proteins and Their Functional Implications. Int. J. Mol. Sci. 2026, 27, 5745. https://doi.org/10.3390/ijms27135745
Balasco N, Esposito L, Di Micco S, Vitagliano L. A Global Analysis of the Complex Structural Organization of KCTD Proteins and Their Functional Implications. International Journal of Molecular Sciences. 2026; 27(13):5745. https://doi.org/10.3390/ijms27135745
Chicago/Turabian StyleBalasco, Nicole, Luciana Esposito, Simone Di Micco, and Luigi Vitagliano. 2026. "A Global Analysis of the Complex Structural Organization of KCTD Proteins and Their Functional Implications" International Journal of Molecular Sciences 27, no. 13: 5745. https://doi.org/10.3390/ijms27135745
APA StyleBalasco, N., Esposito, L., Di Micco, S., & Vitagliano, L. (2026). A Global Analysis of the Complex Structural Organization of KCTD Proteins and Their Functional Implications. International Journal of Molecular Sciences, 27(13), 5745. https://doi.org/10.3390/ijms27135745








