Exploratory Analysis of Genetic Variants in BDNF, GABA Receptors, and Dopaminergic Pathways with Alcohol Use Disorder in a Spanish Cohort
Abstract
1. Introduction
2. Results
2.1. GABRA Gene Polymorphisms
2.1.1. GABRA1 Polymorphisms: rs1037715 and rs2279020
2.1.2. GABRA2 Polymorphisms: rs71611977, rs279858, rs9291283, and rs894269
2.1.3. GABRA6 Polymorphisms: rs1992647, rs2197414, and rs3219151
2.2. Dopamine Receptor Polymorphisms: ANKK1/DRD2 (rs6277, rs1799978, and rs1800497)
2.3. BDNF Polymorphism (rs6265)
3. Discussion
4. Materials and Methods
4.1. Patients and Controls
4.2. Genotyping
4.3. Statistical Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Haplotype | Frequency (AUD Patients) | Frequency (Controls) | Haplotype OR (95% CI) | p |
|---|---|---|---|---|
| CA | 0.199 | 0.233 | 0.842 (0.581~1.219) | 0.363 |
| CG | 0.606 | 0.573 | 1.191 (0.881~1.61) | 0.254 |
| TG | 0.182 | 0.19 | 0.976 (0.66~1.445) | 0.907 |
| rs71611977 | rs279858 | rs9291283 | rs894269 | |
|---|---|---|---|---|
| rs71611977 | 0.036 | −0.144 | 0.234 | |
| rs279858 | 0 | 0.580 | 0.143 | |
| rs9291283 | 0.02 | 13.16 | −0.99 | |
| rs894269 | 0.59 | 0.5 | 6.21 |
| Haplotype | Frequency (AUD Patients) | Frequency (Controls) | Haplotype OR (95% CI) | p |
|---|---|---|---|---|
| ACAC | 0.041 | 0.059 | 0.748 (0.367~1.524) | 0.423 |
| ACGC | 0.425 | 0.43 | 1.118 (0.824~1.518) | 0.47 |
| ATAC | 0.208 | 0.185 | 1.272 (0.862~1.876) | 0.224 |
| ATGC | 0.116 | 0.125 | 1.004 (0.625~1.61) | 0.986 |
| ACGT | 0.072 | 0.094 | 0.815 (0.465~1.428) | 0.475 |
| ATGT | 0.094 | 0.08 | 1.298 (0.748~2.255) | 0.351 |
| Group | Individuals | Genotypic Frequencies (%) | Allelic Presence | Allelic Frequencies (%) | ||||
|---|---|---|---|---|---|---|---|---|
| CC | CT | TT | CC + CT | CT + TT | Allele C | Allele T | ||
| AUD | 178 | 36 (20.20) | 78 (43.80) | 64 (36.00) | 114 (64.00) | 142 (79.80) | 150 (42.10) | 206 (57.90) b |
| Controls | 144 | 40 (27.8) | 66 (45.8) | 38 (26.4) | 106 (73.60) | 104 (72.20) a | 146 (50.70) | 142 (49.3) |
| Logistic Regression Analysis | |||||
|---|---|---|---|---|---|
| Model | AUD Patients (%) | Controls (%) | OR | 95% CI | p |
| General | |||||
| CC | 36 (20.22) | 40 (27.78) | 1 | Reference | |
| CT | 78 (43.82) | 66 (45.83) | 1.31 | 0.91–2.54 | 0.114 |
| TT | 64 (35.96) | 38 (26.39) | 1.87 | 1.02–3.42 | 0.042 |
| Dominant | |||||
| CC | 36 (20.22) | 40 (27.78) | 1 | Reference | |
| CT + TT | 142 (79.78) | 104 (72.22) | 1.52 | 0.91–2.54 | 0.114 |
| Recessive | |||||
| CT + CC | 114 (64.04) | 106 (73.61) | 1 | Reference | |
| TT | 64 (35.96) | 38 (26.39) | 1.57 | 0.97–2.53 | 0.067 |
| rs2197414 | rs1992647 | rs3219151 | |
|---|---|---|---|
| rs2197414 | 0.898 | 0.906 | |
| rs1992647 | 91.07 | 0.872 | |
| rs3219151 | 62.19 | 50.98 |
| Haplotype | Frequency (AUD Patients) | Frequency (Controls) | Haplotype OR (95% CI) | p |
|---|---|---|---|---|
| CGC | 0.295 | 0.367 | 0.774 (0.559~1.071) | 0.121 |
| GAT | 0.54 | 0.482 | 1.319 (0.978~1.778) | 0.069 |
| GAC | 0.071 | 0.122 | 0.58 (0.339~0.992) | 0.045 |
| rs1800497 | rs1799978 | rs6277 | |
|---|---|---|---|
| rs1800497 | −0.532 | 0.416 | |
| rs1799978 | 0.29 | 0.663 | |
| rs6277 | 4.39 | 2.39 |
| Haplotype | Frequency (AUD Patients) | Frequency (Controls) | Haplotype OR (95% CI) | p |
|---|---|---|---|---|
| CTT | 0.543 | 0.534 | 1.023 (0.787~1.33) | 0.862 |
| CTC | 0.251 | 0.25 | 1.002 (0.73~1.376) | 0.987 |
| TTC | 0.127 | 0.134 | 0.938 (0.62~1.419) | 0.763 |
| TTT | 0.04 | 0.044 | 0.895 (0.445~1.8) | 0.756 |
| CCC | 0.027 | 0.032 | 0.852 (0.372~1.949) | 0.704 |
| Group | Individuals | Genotypic Frequencies (%) | Allelic Presence (%) | Allelic Frequencies | ||||
|---|---|---|---|---|---|---|---|---|
| GG | AG | AA | GG + GA | GA + AA | Allele G | Allele A | ||
| AUD | 187 | 115 (61.5) | 64 (34.2) | 8 (4.3) | 179 (95.7) | 72 (38.50) | 294 (78.61) | 80 (21.39) |
| Controls | 157 | 82 (52.2) | 69 (43.9) | 6 (3.8) | 151 (96.20) | 75 (47.80) | 233 (74.20) | 81 (25.80) |
| Logistic Regression Analysis | |||||
|---|---|---|---|---|---|
| Model | AUD Patients (%) | Controls (%) | OR | 95% CI | p |
| General | |||||
| GG | 115 (61.50) | 82 (52.23) | 1 | Reference | |
| GA | 64 (34.22) | 69 (43.95) | 0.66 | 0.42–1.03 | 0.067 |
| AA | 8 (4.28) | 6 (3.82) | 0.95 | 0.32–2.84 | 0.928 |
| Dominant | |||||
| GG | 115 (61.50) | 82 (52.23) | 1 | Reference | |
| GA + AA | 72 (38.50) | 75 (47.77) | 0.68 | 0.45–1.05 | 0.084 |
| Recessive | |||||
| GG + GA | 179 (95.72) | 151 (96.18) | 1 | Reference | |
| AA | 8 (4.28) | 6 (3.82) | 1.12 | 0.38–3.31 | 0.831 |
| Gene | SNP/Haplotype | Main Findings in AUD vs. Controls | OR (95% CI) | p- Value |
|---|---|---|---|---|
| GABRA6 | rs3219151 (CT + TT vs. CC) | Higher frequency of T-allele carriers in AUD patients | 1.62 (1.02–2.59) | 0.04 |
| rs3219151 (T vs. C allele) | Higher T-allele frequency in AUD patients | 1.41 (1.03–1.96) | 0.03 | |
| rs3219151 (TT vs. CC, general model) | Higher frequency of TT genotype in AUD patients | 1.87 (1.02–3.42) | 0.042 * | |
| GAC haplotype (rs2197414–rs1992647–rs3219151) | Lower frequency in AUD patients than in controls | 0.58 (0.339–0.992) | 0.045 | |
| BDNF | rs6265 (GA vs. GG) | Lower frequency of GA genotype in AUD patients | 0.66 (0.42–1.03) | 0.067 |
| rs6265 (GA + AA vs. GG) | Lower frequency of A- allele carriers in AUD patients | 0.68 (0.45–1.05) | 0.084 |
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Rojas-Pirela, M.; Gómez Lesmes, S.P.; Salete-Granado, D.; Llorente, H.; Pérez Nieto, M.-Á.; Novo-Veleiro, I.; Cieza-Borrella, C.; Pastor, I.; Fernández-Mateos, J.; Inés Revuelta, S.M.; et al. Exploratory Analysis of Genetic Variants in BDNF, GABA Receptors, and Dopaminergic Pathways with Alcohol Use Disorder in a Spanish Cohort. Int. J. Mol. Sci. 2026, 27, 5376. https://doi.org/10.3390/ijms27125376
Rojas-Pirela M, Gómez Lesmes SP, Salete-Granado D, Llorente H, Pérez Nieto M-Á, Novo-Veleiro I, Cieza-Borrella C, Pastor I, Fernández-Mateos J, Inés Revuelta SM, et al. Exploratory Analysis of Genetic Variants in BDNF, GABA Receptors, and Dopaminergic Pathways with Alcohol Use Disorder in a Spanish Cohort. International Journal of Molecular Sciences. 2026; 27(12):5376. https://doi.org/10.3390/ijms27125376
Chicago/Turabian StyleRojas-Pirela, Maura, Sandra Patricia Gómez Lesmes, Daniel Salete-Granado, Hernán Llorente, María-Ángeles Pérez Nieto, Ignacio Novo-Veleiro, Clara Cieza-Borrella, Isabel Pastor, Javier Fernández-Mateos, Sandra M. Inés Revuelta, and et al. 2026. "Exploratory Analysis of Genetic Variants in BDNF, GABA Receptors, and Dopaminergic Pathways with Alcohol Use Disorder in a Spanish Cohort" International Journal of Molecular Sciences 27, no. 12: 5376. https://doi.org/10.3390/ijms27125376
APA StyleRojas-Pirela, M., Gómez Lesmes, S. P., Salete-Granado, D., Llorente, H., Pérez Nieto, M.-Á., Novo-Veleiro, I., Cieza-Borrella, C., Pastor, I., Fernández-Mateos, J., Inés Revuelta, S. M., Chamorro, A.-J., Laso, F.-J., González-Sarmiento, R., & Marcos, M. (2026). Exploratory Analysis of Genetic Variants in BDNF, GABA Receptors, and Dopaminergic Pathways with Alcohol Use Disorder in a Spanish Cohort. International Journal of Molecular Sciences, 27(12), 5376. https://doi.org/10.3390/ijms27125376

