Figure 1.
Dose- and time-dependent antiproliferative effects of RES and PAC in HeLa cells. HeLa cervical cancer cells were treated with increasing concentrations of RES (5–100 µM) (A) or PAC (10–1000 nM) (B) for 24 and 48 h. Cell viability was assessed using the XTT assay and expressed as percentage relative to untreated control cells. Data are presented as mean ± SD of three independent experiments (n = 3). The dashed red line indicates the 50% viability threshold. Both RES and PAC exhibited dose- and time-dependent reductions in cell viability, with lower IC50 values observed at 48 h compared to 24 h, indicating increased antiproliferative potency over time. IC50 values were calculated by log-linear interpolation and are shown within each panel (RES: 68.5 µM at 24 h and 54.3 µM at 48 h; PAC: 494.3 nM at 24 h and 317.6 nM at 48 h). Statistical significance was determined by one-way ANOVA followed by Tukey’s post hoc test. * p < 0.05, ** p < 0.01, *** p < 0.001 versus control. ns: not significant. For RES, statistically significant reductions in cell viability were observed at concentrations ≥10 µM at both 24 h (p = 0.031, 0.018, 0.0065, and 0.0004 for 10–100 µM, respectively) and 48 h (p = 0.028, 0.014, 0.0049, and 0.0003 for 10–100 µM, respectively), while 5 µM remained non-significant at both time points (p = 0.082 and 0.061). For PAC, significant effects were detected at concentrations ≥ 10 nM at both 24 h (p = 0.029, 0.021, 0.0082, 0.0058, and 0.0005 for 10–1000 nM, respectively) and 48 h (p = 0.027, 0.018, 0.0076, 0.0042, and 0.0004 for 10–1000 nM, respectively).
Figure 1.
Dose- and time-dependent antiproliferative effects of RES and PAC in HeLa cells. HeLa cervical cancer cells were treated with increasing concentrations of RES (5–100 µM) (A) or PAC (10–1000 nM) (B) for 24 and 48 h. Cell viability was assessed using the XTT assay and expressed as percentage relative to untreated control cells. Data are presented as mean ± SD of three independent experiments (n = 3). The dashed red line indicates the 50% viability threshold. Both RES and PAC exhibited dose- and time-dependent reductions in cell viability, with lower IC50 values observed at 48 h compared to 24 h, indicating increased antiproliferative potency over time. IC50 values were calculated by log-linear interpolation and are shown within each panel (RES: 68.5 µM at 24 h and 54.3 µM at 48 h; PAC: 494.3 nM at 24 h and 317.6 nM at 48 h). Statistical significance was determined by one-way ANOVA followed by Tukey’s post hoc test. * p < 0.05, ** p < 0.01, *** p < 0.001 versus control. ns: not significant. For RES, statistically significant reductions in cell viability were observed at concentrations ≥10 µM at both 24 h (p = 0.031, 0.018, 0.0065, and 0.0004 for 10–100 µM, respectively) and 48 h (p = 0.028, 0.014, 0.0049, and 0.0003 for 10–100 µM, respectively), while 5 µM remained non-significant at both time points (p = 0.082 and 0.061). For PAC, significant effects were detected at concentrations ≥ 10 nM at both 24 h (p = 0.029, 0.021, 0.0082, 0.0058, and 0.0005 for 10–1000 nM, respectively) and 48 h (p = 0.027, 0.018, 0.0076, 0.0042, and 0.0004 for 10–1000 nM, respectively).
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Figure 2.
Quantitative analysis of the synergistic interaction between RES and PAC using the Chou–Talalay method. (A) CI values plotted against fraction affected (Fa), demonstrating the relationship between drug effect and interaction type. CI values below 1 indicate synergism, with decreasing CI values at higher Fa levels reflecting increased synergy at greater levels of growth inhibition. (B) CI values at different dose levels expressed as multiples of the IC50 (0.5×, 1×, 2×, 4×, and 8× IC50). The combination exhibited a progressive decrease in CI values from 0.92 to 0.62, indicating a shift from near-additive effects at lower doses to moderate and strong synergism at higher dose levels. Data are presented as mean ± SD of three independent experiments (n = 3). The dashed line represents the additivity threshold (CI = 1). CI values were calculated from triplicate experiments and are presented as mean ± SD. Dose levels were defined based on IC50 values obtained from 48 h dose–response analyses. CI values were interpreted as follows: CI < 0.9, synergism; 0.9–1.1, additive effect; CI > 1.1, antagonism. Statistical analysis was performed using one-way ANOVA followed by Tukey’s post hoc test, with p < 0.05 considered statistically significant.
Figure 2.
Quantitative analysis of the synergistic interaction between RES and PAC using the Chou–Talalay method. (A) CI values plotted against fraction affected (Fa), demonstrating the relationship between drug effect and interaction type. CI values below 1 indicate synergism, with decreasing CI values at higher Fa levels reflecting increased synergy at greater levels of growth inhibition. (B) CI values at different dose levels expressed as multiples of the IC50 (0.5×, 1×, 2×, 4×, and 8× IC50). The combination exhibited a progressive decrease in CI values from 0.92 to 0.62, indicating a shift from near-additive effects at lower doses to moderate and strong synergism at higher dose levels. Data are presented as mean ± SD of three independent experiments (n = 3). The dashed line represents the additivity threshold (CI = 1). CI values were calculated from triplicate experiments and are presented as mean ± SD. Dose levels were defined based on IC50 values obtained from 48 h dose–response analyses. CI values were interpreted as follows: CI < 0.9, synergism; 0.9–1.1, additive effect; CI > 1.1, antagonism. Statistical analysis was performed using one-way ANOVA followed by Tukey’s post hoc test, with p < 0.05 considered statistically significant.
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Figure 3.
Limited selectivity in immortalized normal cells of RES and PAC in HeLa and HaCaT cells. (A) IC50 values for RES in HeLa cervical cancer cells and HaCaT normal keratinocytes at 24 and 48 h. (B) IC50 values for PAC under the same conditions. For both agents, IC50 values were consistently higher in HaCaT cells compared to HeLa cells at both time points, indicating reduced sensitivity of normal cells. The selectivity index (SI), calculated as IC50(HaCaT)/IC50(HeLa), exceeded 2 in all conditions (RES: 2.6 and 2.2; PAC: 2.2 and 2.1 at 24 and 48 h, respectively), indicating limited selectivity in immortalized normal cells rather than definitive tumor-specific selectivity. Data are derived from three independent experiments (n = 3). IC50 values were calculated by nonlinear regression analysis of dose–response curves. It should be noted that HaCaT cells are immortalized keratinocytes and do not fully represent primary normal cervical epithelial cells.
Figure 3.
Limited selectivity in immortalized normal cells of RES and PAC in HeLa and HaCaT cells. (A) IC50 values for RES in HeLa cervical cancer cells and HaCaT normal keratinocytes at 24 and 48 h. (B) IC50 values for PAC under the same conditions. For both agents, IC50 values were consistently higher in HaCaT cells compared to HeLa cells at both time points, indicating reduced sensitivity of normal cells. The selectivity index (SI), calculated as IC50(HaCaT)/IC50(HeLa), exceeded 2 in all conditions (RES: 2.6 and 2.2; PAC: 2.2 and 2.1 at 24 and 48 h, respectively), indicating limited selectivity in immortalized normal cells rather than definitive tumor-specific selectivity. Data are derived from three independent experiments (n = 3). IC50 values were calculated by nonlinear regression analysis of dose–response curves. It should be noted that HaCaT cells are immortalized keratinocytes and do not fully represent primary normal cervical epithelial cells.
Figure 4.
Flow cytometric analysis of apoptosis induced by RES, PAC, and their combination in HeLa cells. Representative Annexin V-FITC/PI dot plots of HeLa cells following 48 h treatment with RES, PAC, and their combination at IC50 concentrations. Cells were categorized as viable (Annexin V−/PI−), early apoptotic (Annexin V+/PI−), late apoptotic (Annexin V+/PI+), and necrotic (Annexin V−/PI+). RES treatment increased the total apoptotic cell population compared to control cells, with elevations in both early and late apoptotic fractions. PAC treatment resulted in a higher proportion of apoptotic cells than RES, affecting both early and late apoptotic populations. The combination of RES and PAC produced the highest level of apoptosis among all groups, with a pronounced accumulation of both early and late apoptotic cells, suggesting an enhanced apoptotic response under combination conditions. Data are representative of flow cytometry experiments and are presented for illustrative purposes. Annexin V/PI staining does not allow definitive discrimination between late apoptosis and secondary necrosis.
Figure 4.
Flow cytometric analysis of apoptosis induced by RES, PAC, and their combination in HeLa cells. Representative Annexin V-FITC/PI dot plots of HeLa cells following 48 h treatment with RES, PAC, and their combination at IC50 concentrations. Cells were categorized as viable (Annexin V−/PI−), early apoptotic (Annexin V+/PI−), late apoptotic (Annexin V+/PI+), and necrotic (Annexin V−/PI+). RES treatment increased the total apoptotic cell population compared to control cells, with elevations in both early and late apoptotic fractions. PAC treatment resulted in a higher proportion of apoptotic cells than RES, affecting both early and late apoptotic populations. The combination of RES and PAC produced the highest level of apoptosis among all groups, with a pronounced accumulation of both early and late apoptotic cells, suggesting an enhanced apoptotic response under combination conditions. Data are representative of flow cytometry experiments and are presented for illustrative purposes. Annexin V/PI staining does not allow definitive discrimination between late apoptosis and secondary necrosis.
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Figure 5.
Cell cycle distribution of HeLa cells following treatment with RES, PAC, and their combination. Representative DNA content histograms obtained by PI staining and flow cytometry analysis after 48 h treatment with RES (54.3 µM), PAC (317.6 nM), and their combination at IC50 concentrations. Cell populations were distributed across sub-G1, G0/G1, S, and G2/M phases. Control cells exhibited a typical distribution with the majority of cells in the G0/G1 phase. RES treatment resulted in a modest increase in the G0/G1 population and an elevation in the sub-G1 fraction, often associated with apoptotic DNA fragmentation. PAC treatment led to a pronounced accumulation of cells in the G2/M phase, accompanied by an increase in the sub-G1 population. The combination of RES and PAC further enhanced these effects, with a marked increase in G2/M phase accumulation and a substantial rise in the sub-G1 fraction compared to single-agent treatments, suggesting an association with increased G2/M accumulation and apoptotic cell enrichment. Data are representative of flow cytometry experiments and are presented for illustrative purposes. Cell cycle distribution was determined using PI staining and DNA content analysis.
Figure 5.
Cell cycle distribution of HeLa cells following treatment with RES, PAC, and their combination. Representative DNA content histograms obtained by PI staining and flow cytometry analysis after 48 h treatment with RES (54.3 µM), PAC (317.6 nM), and their combination at IC50 concentrations. Cell populations were distributed across sub-G1, G0/G1, S, and G2/M phases. Control cells exhibited a typical distribution with the majority of cells in the G0/G1 phase. RES treatment resulted in a modest increase in the G0/G1 population and an elevation in the sub-G1 fraction, often associated with apoptotic DNA fragmentation. PAC treatment led to a pronounced accumulation of cells in the G2/M phase, accompanied by an increase in the sub-G1 population. The combination of RES and PAC further enhanced these effects, with a marked increase in G2/M phase accumulation and a substantial rise in the sub-G1 fraction compared to single-agent treatments, suggesting an association with increased G2/M accumulation and apoptotic cell enrichment. Data are representative of flow cytometry experiments and are presented for illustrative purposes. Cell cycle distribution was determined using PI staining and DNA content analysis.
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Figure 6.
JC-1 analysis of mitochondrial membrane potential (ΔΨm) in HeLa cells following treatment with RES, PAC, and their combination. Representative JC-1 dot plots illustrate mitochondrial membrane potential after 48 h treatment with RES, PAC, and their combination at IC50 concentrations. The distribution of cells reflects mitochondrial polarization status, where high red fluorescence (JC-1 aggregates) indicates preserved ΔΨm, whereas increased green fluorescence (JC-1 monomers) is associated with mitochondrial depolarization. Control cells predominantly exhibited high red fluorescence, consistent with intact mitochondrial membrane potential. Treatment with RES and PAC individually was associated with an increased proportion of depolarized cells. The percentage of depolarized cells was determined based on quadrant distribution and is indicated in each panel: RES (38%), PAC (45%), and RES + PAC (72%). The combined treatment (RES + PAC) further increased the proportion of depolarized cells, suggesting an enhanced loss of ΔΨm compared to single-agent treatments.
Figure 6.
JC-1 analysis of mitochondrial membrane potential (ΔΨm) in HeLa cells following treatment with RES, PAC, and their combination. Representative JC-1 dot plots illustrate mitochondrial membrane potential after 48 h treatment with RES, PAC, and their combination at IC50 concentrations. The distribution of cells reflects mitochondrial polarization status, where high red fluorescence (JC-1 aggregates) indicates preserved ΔΨm, whereas increased green fluorescence (JC-1 monomers) is associated with mitochondrial depolarization. Control cells predominantly exhibited high red fluorescence, consistent with intact mitochondrial membrane potential. Treatment with RES and PAC individually was associated with an increased proportion of depolarized cells. The percentage of depolarized cells was determined based on quadrant distribution and is indicated in each panel: RES (38%), PAC (45%), and RES + PAC (72%). The combined treatment (RES + PAC) further increased the proportion of depolarized cells, suggesting an enhanced loss of ΔΨm compared to single-agent treatments.
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Figure 7.
Intracellular ROS levels in HeLa cells following treatment with RES, PAC, and their combination. Intracellular ROS production was measured using DCFH-DA staining and flow cytometry after 48 h treatment with RES (54.3 µM), PAC (317.6 nM), and their combination. H2O2 (200 µM) was used as a positive control. A total of 10,000 events were acquired per sample. Autofluorescence was subtracted, and ROS levels were normalized to control values (fold change = MFI(sample)/MFI(control)). (A) ROS fold change relative to control: Control (1.00×), H2O2 (5.45×, *** p < 0.001), RES (2.34×, ** p < 0.01), PAC (2.81×, *** p < 0.001), and RES + PAC (4.82×, *** p < 0.001). (B) Percentage increase in ROS levels: H2O2 (+445%), RES (+134%), PAC (+181%), and RES + PAC (+382%). Data are presented as mean ± SD from three independent experiments (n = 3). Treatment with RES and PAC individually was associated with increased intracellular ROS levels compared to control. The combined treatment (RES + PAC) further increased ROS levels relative to single-agent treatments; however, this increase did not exceed the levels observed with the H2O2 positive control. These findings suggest that ROS generation may contribute to the observed cellular responses, although a direct causal relationship cannot be established based on this assay alone.
Figure 7.
Intracellular ROS levels in HeLa cells following treatment with RES, PAC, and their combination. Intracellular ROS production was measured using DCFH-DA staining and flow cytometry after 48 h treatment with RES (54.3 µM), PAC (317.6 nM), and their combination. H2O2 (200 µM) was used as a positive control. A total of 10,000 events were acquired per sample. Autofluorescence was subtracted, and ROS levels were normalized to control values (fold change = MFI(sample)/MFI(control)). (A) ROS fold change relative to control: Control (1.00×), H2O2 (5.45×, *** p < 0.001), RES (2.34×, ** p < 0.01), PAC (2.81×, *** p < 0.001), and RES + PAC (4.82×, *** p < 0.001). (B) Percentage increase in ROS levels: H2O2 (+445%), RES (+134%), PAC (+181%), and RES + PAC (+382%). Data are presented as mean ± SD from three independent experiments (n = 3). Treatment with RES and PAC individually was associated with increased intracellular ROS levels compared to control. The combined treatment (RES + PAC) further increased ROS levels relative to single-agent treatments; however, this increase did not exceed the levels observed with the H2O2 positive control. These findings suggest that ROS generation may contribute to the observed cellular responses, although a direct causal relationship cannot be established based on this assay alone.
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Figure 8.
Effects of NAC pre-treatment on ROS levels and cell viability in RES + PAC-treated HeLa cells. HeLa cells were pre-treated with 5 mM NAC for 1 h prior to treatment with RES + PAC for 48 h. (A) Intracellular ROS levels expressed as fold change relative to control: Control (1.00×), RES + PAC (4.82×), and RES + PAC + NAC (1.74×). (B) Cell viability expressed as percentage of control: Control (100%), RES + PAC (32.4%), and RES + PAC + NAC (60.8%). Data are presented as mean ± SD from three independent experiments (n = 3). Statistical significance was determined by one-way analysis of variance (ANOVA) followed by Tukey’s post hoc test (* p < 0.05, ** p < 0.01, *** p < 0.001 vs. control; ns: not significant). NAC pre-treatment partially attenuated both ROS accumulation and the reduction in cell viability observed in the RES + PAC group. NAC pre-treatment was associated with a reduction in intracellular ROS levels and a partial recovery in cell viability in RES + PAC-treated cells. These findings suggest a potential involvement of ROS in the observed cytotoxic effects; however, a direct causal relationship cannot be established based on these data alone.
Figure 8.
Effects of NAC pre-treatment on ROS levels and cell viability in RES + PAC-treated HeLa cells. HeLa cells were pre-treated with 5 mM NAC for 1 h prior to treatment with RES + PAC for 48 h. (A) Intracellular ROS levels expressed as fold change relative to control: Control (1.00×), RES + PAC (4.82×), and RES + PAC + NAC (1.74×). (B) Cell viability expressed as percentage of control: Control (100%), RES + PAC (32.4%), and RES + PAC + NAC (60.8%). Data are presented as mean ± SD from three independent experiments (n = 3). Statistical significance was determined by one-way analysis of variance (ANOVA) followed by Tukey’s post hoc test (* p < 0.05, ** p < 0.01, *** p < 0.001 vs. control; ns: not significant). NAC pre-treatment partially attenuated both ROS accumulation and the reduction in cell viability observed in the RES + PAC group. NAC pre-treatment was associated with a reduction in intracellular ROS levels and a partial recovery in cell viability in RES + PAC-treated cells. These findings suggest a potential involvement of ROS in the observed cytotoxic effects; however, a direct causal relationship cannot be established based on these data alone.
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Figure 9.
RT-qPCR analysis of apoptosis- and cell cycle-related gene expression in HeLa cells following treatment with RES, PAC, and their combination. HeLa cells were treated with IC50 concentrations of RES (54.3 µM), PAC (317.6 nM), and their combination for 48 h. mRNA expression levels were normalized to GAPDH and expressed as fold change relative to control (set to 1.0). Data are presented as mean ± SD from three independent experiments (n = 3). (A–D) Pro-apoptotic genes (BAX, CASP9, CASP3, and CYCS) were upregulated following treatment, with the highest fold changes observed in the combination group. Among these, CASP9 showed the highest fold change (4.24-fold, *** p < 0.001). (E) The anti-apoptotic gene BCL-2 was downregulated across all treatment groups, with the lowest expression observed in the combination group (0.32-fold, *** p < 0.001). (F) The BAX/BCL-2 ratio was increased in the combination group compared to control (*** p < 0.001), suggesting a shift toward a pro-apoptotic gene expression profile. (G,H) Cell cycle regulator genes CCNB1 (Cyclin B1) and CDK1 were downregulated following treatment, with the strongest reductions observed in the combination group (0.41-fold and 0.28-fold, respectively; *** p < 0.001), which may be associated with the G2/M phase accumulation observed in cell cycle analysis. Statistical significance was determined by one-way analysis of variance (ANOVA) followed by Tukey’s post hoc test (* p < 0.05, ** p < 0.01, *** p < 0.001 vs. control; ns: not significant).
Figure 9.
RT-qPCR analysis of apoptosis- and cell cycle-related gene expression in HeLa cells following treatment with RES, PAC, and their combination. HeLa cells were treated with IC50 concentrations of RES (54.3 µM), PAC (317.6 nM), and their combination for 48 h. mRNA expression levels were normalized to GAPDH and expressed as fold change relative to control (set to 1.0). Data are presented as mean ± SD from three independent experiments (n = 3). (A–D) Pro-apoptotic genes (BAX, CASP9, CASP3, and CYCS) were upregulated following treatment, with the highest fold changes observed in the combination group. Among these, CASP9 showed the highest fold change (4.24-fold, *** p < 0.001). (E) The anti-apoptotic gene BCL-2 was downregulated across all treatment groups, with the lowest expression observed in the combination group (0.32-fold, *** p < 0.001). (F) The BAX/BCL-2 ratio was increased in the combination group compared to control (*** p < 0.001), suggesting a shift toward a pro-apoptotic gene expression profile. (G,H) Cell cycle regulator genes CCNB1 (Cyclin B1) and CDK1 were downregulated following treatment, with the strongest reductions observed in the combination group (0.41-fold and 0.28-fold, respectively; *** p < 0.001), which may be associated with the G2/M phase accumulation observed in cell cycle analysis. Statistical significance was determined by one-way analysis of variance (ANOVA) followed by Tukey’s post hoc test (* p < 0.05, ** p < 0.01, *** p < 0.001 vs. control; ns: not significant).
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Figure 10.
β-tubulin immunofluorescence analysis of microtubule organization in HeLa cells following treatment with RES, PAC, and their combination. (A) Representative immunofluorescence images of HeLa cells treated with RES, PAC, and RES + PAC for 48 h. β-tubulin (green) staining illustrates microtubule organization, while nuclei are counterstained with DAPI (blue). Control cells exhibit a dense and well-organized microtubule network. Treatment with RES and PAC was associated with alterations in microtubule organization and a reduction in β-tubulin staining intensity. The combination group showed more pronounced alterations in microtubule organization compared to single-agent treatments. Scale bar: 20 µm. (B) Semi-quantitative H-score analysis of β-tubulin staining intensity. A decrease in H-score was observed across treatment groups, with the lowest values detected in the RES + PAC group.
Figure 10.
β-tubulin immunofluorescence analysis of microtubule organization in HeLa cells following treatment with RES, PAC, and their combination. (A) Representative immunofluorescence images of HeLa cells treated with RES, PAC, and RES + PAC for 48 h. β-tubulin (green) staining illustrates microtubule organization, while nuclei are counterstained with DAPI (blue). Control cells exhibit a dense and well-organized microtubule network. Treatment with RES and PAC was associated with alterations in microtubule organization and a reduction in β-tubulin staining intensity. The combination group showed more pronounced alterations in microtubule organization compared to single-agent treatments. Scale bar: 20 µm. (B) Semi-quantitative H-score analysis of β-tubulin staining intensity. A decrease in H-score was observed across treatment groups, with the lowest values detected in the RES + PAC group.
Figure 11.
Caspase-9 protein expression in HeLa cells following treatment with RES, PAC, and their combination. (A–D) Representative immunohistochemical images of HeLa cells treated with control (A), RES (B), PAC (C), and RES + PAC (D) for 48 h. Caspase-9 expression is visualized as brown DAB staining, while nuclei are counterstained with hematoxylin (blue). Images were captured at 400× magnification (scale bar: 50 µm). (E) Semi-quantitative H-score analysis of caspase-9 expression. (F) IOD quantification of caspase-9 immunoreactivity. Both H-score and IOD analyses demonstrate a progressive increase in caspase-9 expression from control to RES- and PAC-treated cells, with the highest levels observed in the RES + PAC combination group. Both H-score and IOD analyses demonstrated increased caspase-9 expression across treatment groups compared to control, with the highest levels observed in the RES + PAC combination group. Data are presented as mean ± SD from three independent experiments (n = 3; ≥100 cells analyzed per group). Statistical significance was defined as ** p < 0.01 and *** p < 0.001 vs. control.
Figure 11.
Caspase-9 protein expression in HeLa cells following treatment with RES, PAC, and their combination. (A–D) Representative immunohistochemical images of HeLa cells treated with control (A), RES (B), PAC (C), and RES + PAC (D) for 48 h. Caspase-9 expression is visualized as brown DAB staining, while nuclei are counterstained with hematoxylin (blue). Images were captured at 400× magnification (scale bar: 50 µm). (E) Semi-quantitative H-score analysis of caspase-9 expression. (F) IOD quantification of caspase-9 immunoreactivity. Both H-score and IOD analyses demonstrate a progressive increase in caspase-9 expression from control to RES- and PAC-treated cells, with the highest levels observed in the RES + PAC combination group. Both H-score and IOD analyses demonstrated increased caspase-9 expression across treatment groups compared to control, with the highest levels observed in the RES + PAC combination group. Data are presented as mean ± SD from three independent experiments (n = 3; ≥100 cells analyzed per group). Statistical significance was defined as ** p < 0.01 and *** p < 0.001 vs. control.
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Figure 12.
GO enrichment analysis of RES and PAC-associated target genes. (A–C) Top enriched GO terms categorized into Biological Process (BP), Cellular Component (CC), and Molecular Function (MF). Enrichment significance is presented as −log10(p-value), with higher values indicating stronger enrichment (p < 0.05, FDR < 0.05). BP analysis identified enrichment of terms associated with apoptotic processes, cell cycle regulation, and oxidative stress-related pathways. CC analysis indicated enrichment in mitochondrial and intracellular components, including mitochondrial membrane and apoptosome-related structures. MF analysis revealed enrichment in functions such as caspase activity, protein binding interactions, and oxidoreductase-related activities. These enrichment patterns suggest potential associations with apoptosis-related processes, ROS-associated signaling, and mitochondrial function; however, these findings are based on in silico analysis and should be interpreted as hypothesis-generating rather than mechanistic evidence.
Figure 12.
GO enrichment analysis of RES and PAC-associated target genes. (A–C) Top enriched GO terms categorized into Biological Process (BP), Cellular Component (CC), and Molecular Function (MF). Enrichment significance is presented as −log10(p-value), with higher values indicating stronger enrichment (p < 0.05, FDR < 0.05). BP analysis identified enrichment of terms associated with apoptotic processes, cell cycle regulation, and oxidative stress-related pathways. CC analysis indicated enrichment in mitochondrial and intracellular components, including mitochondrial membrane and apoptosome-related structures. MF analysis revealed enrichment in functions such as caspase activity, protein binding interactions, and oxidoreductase-related activities. These enrichment patterns suggest potential associations with apoptosis-related processes, ROS-associated signaling, and mitochondrial function; however, these findings are based on in silico analysis and should be interpreted as hypothesis-generating rather than mechanistic evidence.
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Figure 13.
KEGG pathway enrichment analysis of RES and PAC-associated target genes. (A) Bar plot showing the top enriched KEGG pathways ranked by −log10(p-value). (B) Bubble plot representation of KEGG pathway enrichment, where the x-axis indicates −log10(p-value) and bubble size reflects the relative enrichment level. Significantly enriched pathways (p < 0.05, FDR < 0.05) include apoptosis (hsa04210), p53 signaling pathway (hsa04115), cell cycle (hsa04110), PI3K–Akt signaling pathway (hsa04151), MAPK signaling pathway (hsa04010), oxidative phosphorylation (hsa00190), glutathione metabolism (hsa00480), TNF signaling pathway (hsa04668), and pathways associated with mitochondrial function. These pathways are related to processes involving apoptosis, oxidative stress, and cell cycle regulation. These enriched pathways suggest potential associations with apoptosis-related processes, oxidative stress responses, and cell cycle regulation; however, these findings are derived from in silico analysis and should be interpreted as hypothesis-generating rather than definitive mechanistic evidence.
Figure 13.
KEGG pathway enrichment analysis of RES and PAC-associated target genes. (A) Bar plot showing the top enriched KEGG pathways ranked by −log10(p-value). (B) Bubble plot representation of KEGG pathway enrichment, where the x-axis indicates −log10(p-value) and bubble size reflects the relative enrichment level. Significantly enriched pathways (p < 0.05, FDR < 0.05) include apoptosis (hsa04210), p53 signaling pathway (hsa04115), cell cycle (hsa04110), PI3K–Akt signaling pathway (hsa04151), MAPK signaling pathway (hsa04010), oxidative phosphorylation (hsa00190), glutathione metabolism (hsa00480), TNF signaling pathway (hsa04668), and pathways associated with mitochondrial function. These pathways are related to processes involving apoptosis, oxidative stress, and cell cycle regulation. These enriched pathways suggest potential associations with apoptosis-related processes, oxidative stress responses, and cell cycle regulation; however, these findings are derived from in silico analysis and should be interpreted as hypothesis-generating rather than definitive mechanistic evidence.
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Figure 14.
Centrality analysis of top hub genes in the PPI network associated with RES and PAC targets. Bar plot showing the top 10 hub genes identified from the PPI network using cytoHubba analysis (STRING database, minimum interaction score: 0.400). Degree centrality and betweenness centrality (×100) are presented for each gene. TP53, CASP3, CASP9, BCL2, BAX, PIK3CA, AKT1, MAPK1, MTOR, and CYCS exhibited relatively high centrality values within the interaction network, suggesting that these genes may occupy prominent positions in the predicted network topology. These genes are associated with pathways related to apoptosis, cell survival, and intracellular signaling; however, this analysis is based on computational network modeling and should be interpreted as hypothesis-generating rather than direct evidence of functional or mechanistic involvement.
Figure 14.
Centrality analysis of top hub genes in the PPI network associated with RES and PAC targets. Bar plot showing the top 10 hub genes identified from the PPI network using cytoHubba analysis (STRING database, minimum interaction score: 0.400). Degree centrality and betweenness centrality (×100) are presented for each gene. TP53, CASP3, CASP9, BCL2, BAX, PIK3CA, AKT1, MAPK1, MTOR, and CYCS exhibited relatively high centrality values within the interaction network, suggesting that these genes may occupy prominent positions in the predicted network topology. These genes are associated with pathways related to apoptosis, cell survival, and intracellular signaling; however, this analysis is based on computational network modeling and should be interpreted as hypothesis-generating rather than direct evidence of functional or mechanistic involvement.
Figure 15.
Mechanistic model of the synergistic effects of RES and PAC in HeLa cells. The schematic illustrates the integrated cellular responses induced by the combined treatment with RES and PAC, highlighting the convergence of oxidative stress, cytoskeletal disruption, and mitochondrial dysfunction. The combination markedly enhances intracellular ROS levels, which contributes to downstream signaling, as partially demonstrated by NAC mediated attenuation of both oxidative stress and cytotoxicity. In parallel, disruption of microtubule dynamics and G2 M phase arrest further amplify cellular stress. These processes collectively converge on mitochondrial dysfunction, characterized by loss of membrane potential and a shift toward a pro apoptotic gene expression profile. The coordinated engagement of these pathways results in enhanced apoptotic signaling and limited selectivity in immortalized normal cells in cancer cells. The model represents a mechanistically informed framework based on experimental observations.
Figure 15.
Mechanistic model of the synergistic effects of RES and PAC in HeLa cells. The schematic illustrates the integrated cellular responses induced by the combined treatment with RES and PAC, highlighting the convergence of oxidative stress, cytoskeletal disruption, and mitochondrial dysfunction. The combination markedly enhances intracellular ROS levels, which contributes to downstream signaling, as partially demonstrated by NAC mediated attenuation of both oxidative stress and cytotoxicity. In parallel, disruption of microtubule dynamics and G2 M phase arrest further amplify cellular stress. These processes collectively converge on mitochondrial dysfunction, characterized by loss of membrane potential and a shift toward a pro apoptotic gene expression profile. The coordinated engagement of these pathways results in enhanced apoptotic signaling and limited selectivity in immortalized normal cells in cancer cells. The model represents a mechanistically informed framework based on experimental observations.
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Table 1.
Primer sequences used for quantitative real-time PCR.
Table 1.
Primer sequences used for quantitative real-time PCR.
| Gene | Forward Primer (5′ → 3′) | Reverse Primer (5′ → 3′) |
|---|
| BAX | TCAGGATGCGTCCACCAAGAAG | TGTGTCCACGGCGGCAATCATC |
| BCL2 | ATCGCCCTGTGGATGACTGAGT | GCCAGGAGAAATCAAACAGAGGC |
| CASP3 | AGAGGGGATCGTTGTAGAAGCTG | CACAAGCGACTGGATGAACCA |
| CASP9 | CCTCATCATCAACAACCTGG | AAGTCCCTTTCGCAGAAACAG |
| Cyclin B1 (CCNB1) | CCG TCC ATG CGG AAG ATC | ATG GCC AGC GGG AAG AC |
| CYCS | TTCTTCCACACCACCATGAG | GTCTGCCTTTCTCCCTTGTCT |
| CDK1 | GGAAACCAGGAAGCCTAGCATC | GGATGATTCAGTGCCATTTTGCC |
| ACTB (β-Actin) | CATTGCTGACAGGATGCAGAAGG | TGCTGGAAGGTGGACAGTGAGG |
| GAPDH | GGAGCGAGATCCCTCCAAAAT | GGCTGTTGTCATACTTCTCATGG |