SUMF1 Common Variant rs793391 Is Associated with Response to Inhaled Corticosteroids in Patients with COPD
Abstract
1. Introduction
2. Results
2.1. Patients’ Characteristics, Genotype and Allele Frequencies
2.2. Association of SUMF1 Polymorphisms with Lung Function, Histological and Blood-Sampling Parameters at Baseline
2.3. Association of SUMF1 Polymorphisms with Response to Treatment with ICS
3. Discussion
4. Materials and Methods
4.1. Study Population
4.2. Sample Size and Power Justification
4.3. DNA Extraction and Genotyping
4.4. Linkage Disequilibrium Analysis
4.5. Statistical Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
ACL | Aclidinium |
AECOPD | Acute Exacerbations of COPD |
ASMC | Airway Smooth Muscle Cells |
BAL | Bronchoalveolar Lavage |
BUD | Budesonide |
CAT | COPD Assessment Test |
COPD | Chronic Obstructive Pulmonary Disease |
CT | Computed Tomography |
DLCO | Diffusing Capacity for Carbon Monoxide |
ECM | Extracellular Matrix |
FEV1 | Forced Expiratory Volume in 1 Second |
FOR | Formoterol |
GAGs | Glycosaminoglycans |
GOLD | Global Initiative for Chronic Obstructive Lung Disease |
GWAS | Genome-Wide Association Study |
HWE | Hardy–Weinberg Equilibrium |
ICS | Inhaled Corticosteroids |
ISRCTN | International Standard Randomized Controlled Trial Number |
LABA | Long-Acting Beta-2 Agonist |
LAMA | Long-Acting Muscarinic Antagonist |
LD | Linkage Disequilibrium Analysis |
MAF | Minor Allele Frequency |
MCID | Minimal Clinically Important Difference |
MMRC | Modified Medical Research Council (Dyspnea Scale) |
NCBI | National Center for Biotechnology Information |
NO | Nitric Oxide |
QoL | Quality of Life |
RCT | Randomized Controlled Trial |
RNA | Ribonucleic Acid |
RV | Residual Volume |
SABA | Short-Acting Beta-2 Agonist |
SAMA | Short-Acting Muscarinic Antagonist |
SAS® | Statistical Analysis System |
SGRQ | St. George’s Respiratory Questionnaire |
SF-36 | Short Form-36 (General Health Questionnaire) |
SNP | Single Nucleotide Polymorphism |
SUMF1 | Sulfatase Modifying Factor 1 |
TLC | Total Lung Capacity |
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Sex | |
---|---|
Male | 114 (69.1) |
Female | 51 (30.9) |
Age in years | 67 (59–72) |
Ethnic origin | |
White | 163 (100) |
Smoking status | |
Former smokers | 103 (62.4) |
Current smokers | 62 (37.6) |
Pack Years | 50 (37–70) |
Disease duration (months) | 60 (23–120) |
Disease characteristics at baseline | |
Post-bronchodilator FEV1 (liters) | 1.59 (1.2–2.0) |
Post-bronchodilator FEV1 (% of predicted value) | 59 (49–67) |
Post-bronchodilator DLCO_SB (% of predicted value) | 61.5 (48.4–78.2) |
Post-bronchodilator TLC (% of predicted value) | 109 (98–122) |
Post-bronchodilator RV (% of predicted value) | 136 (111–162) |
Post-bronchodilator ratio RV/TLC (% of predicted value) | 116 (104–133) |
Fractional exhaled NO (ppb) | 15 (8–23) |
6 min walking distance (meters) | 460 (390–524) |
MMRC dyspnea scale | 1 (0–2) |
CAT score, total sum | 14 (9–19) |
SGRQ, total score | 32.8 (20.0–48.7) |
ASMC (%) * | 17.4 (12.4–22.2) |
SNP | Chromosome Position | Genotype Frequencies n (%) | Minor Allele | MAF % | HWE (p) |
---|---|---|---|---|---|
rs11915920 C > T | chr3:4368850 | CC = 33 (20) CT = 83 (50.3) TT = 49 (29.7) | C | 45.2 | 0.84 |
Intron Variant | |||||
rs793391 T > G | chr3:4427508 | TT = 91 (55.2) TG = 65 (39.4) GG = 9 (5.5) | G | 25.1 | 0.55 |
Intron Variant |
SNP | Genotype | Treatment Group (n) | Mean Change Score (Min–Max) in 12 Months | Difference Between Treatment Groups (Units) | p-Value |
---|---|---|---|---|---|
rs793391 | TT | LAMA/LABA/placebo (40) | −2.05 | 1.50 | 0.66 |
LAMA/LABA/ICS (41) | −0.55 | ||||
TG | LAMA/LABA/placebo (27) | 0.70 | −2.68 | 0.17 | |
LAMA/LABA/ICS (35) | −1.97 | ||||
GG | LAMA/LABA/placebo (4) | 3.75 | −0.35 | 0.92 | |
LAMA/LABA/ICS (5) | 3.40 | ||||
rs11915920 | CC | LAMA/LABA/placebo (15) | 1.40 | −1.15 | 0.89 |
LAMA/LABA/ICS (16) | 0.25 | ||||
CT | LAMA/LABA/placebo (35) | −1.03 | 0.27 | 0.76 | |
LAMA/LABA/ICS (44) | −0.76 | ||||
TT | LAMA/LABA/placebo (25) | −1.64 | −0.50 | 0.58 | |
LAMA/LABA/ICS (21) | −2.14 |
SNP | Genotype | Treatment Group (n) | Mean Change Score (Min–Max) in 12 Months | Difference Between Treatment Groups (Units) | p-Value |
---|---|---|---|---|---|
rs793391 | TT | LAMA/LABA/placebo (40) | −6.38 (−40–30) | 2.94 | 0.75 |
LAMA/LABA/ICS (41) | −3.44 (−95–27.5) | ||||
TG | LAMA/LABA/placebo (27) | −11.40 (−45–30) | 8.12 | 0.39 | |
LAMA/LABA/ICS (35) | −3.28 (−40–30) | ||||
GG | LAMA/LABA/placebo (4) | 5.00 (−5–20) | −24.00 | 0.018 | |
LAMA/LABA/ICS (5) | −19.00 (−40–5) | ||||
rs11915920 | CC | LAMA/LABA/placebo (15) | −5.67 (−45–30) | 9.00 | 0.34 |
LAMA/LABA/ICS (16) | 3.33 (−35–30) | ||||
CT | LAMA/LABA/placebo (35) | −5.78 (−40–30) | −0.85 | 0.93 | |
LAMA/LABA/ICS (44) | −6.63 (−95–25) | ||||
TT | LAMA/LABA/placebo (25) | −11.36 (−40–20) | 5.97 | 0.52 | |
LAMA/LABA/ICS (21) | −5.40 (−40–30) |
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Ntenti, C.; Papakonstantinou, E.; Grize, L.; Pascarella, M.; Frye, B.C.; Fähndrich, S.; Ioannidou, D.; Savic Prince, S.; Goulas, A.; Stolz, D. SUMF1 Common Variant rs793391 Is Associated with Response to Inhaled Corticosteroids in Patients with COPD. Int. J. Mol. Sci. 2025, 26, 10225. https://doi.org/10.3390/ijms262010225
Ntenti C, Papakonstantinou E, Grize L, Pascarella M, Frye BC, Fähndrich S, Ioannidou D, Savic Prince S, Goulas A, Stolz D. SUMF1 Common Variant rs793391 Is Associated with Response to Inhaled Corticosteroids in Patients with COPD. International Journal of Molecular Sciences. 2025; 26(20):10225. https://doi.org/10.3390/ijms262010225
Chicago/Turabian StyleNtenti, Charikleia, Eleni Papakonstantinou, Leticia Grize, Maria Pascarella, Björn C. Frye, Sebastian Fähndrich, Despoina Ioannidou, Spasenija Savic Prince, Antonis Goulas, and Daiana Stolz. 2025. "SUMF1 Common Variant rs793391 Is Associated with Response to Inhaled Corticosteroids in Patients with COPD" International Journal of Molecular Sciences 26, no. 20: 10225. https://doi.org/10.3390/ijms262010225
APA StyleNtenti, C., Papakonstantinou, E., Grize, L., Pascarella, M., Frye, B. C., Fähndrich, S., Ioannidou, D., Savic Prince, S., Goulas, A., & Stolz, D. (2025). SUMF1 Common Variant rs793391 Is Associated with Response to Inhaled Corticosteroids in Patients with COPD. International Journal of Molecular Sciences, 26(20), 10225. https://doi.org/10.3390/ijms262010225