Multiple Genomic Alterations, Including a Novel AFF4::IRF1 Fusion Gene, in a Treatment-Refractory Blastic Plasmacytoid Dendritic-Cell Neoplasm: A Case Report and Literature Review
Abstract
1. Introduction
2. Case Presentation
3. Discussion
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Guru Murthy, G.S.; Pemmaraju, N.; Atallah, E. Epidemiology and survival of blastic plasmacytoid dendritic cell neoplasm. Leuk. Res. 2018, 73, 21–23. [Google Scholar] [CrossRef] [Scilit]
- Jain, A.; Sweet, K. Blastic Plasmacytoid Dendritic Cell Neoplasm. J. Natl. Compr. Cancer Netw. JNCCN 2023, 21, 515–521. [Google Scholar] [CrossRef] [Scilit]
- Pagano, L.; Valentini, C.G.; Pulsoni, A.; Fisogni, S.; Carluccio, P.; Mannelli, F.; Lunghi, M.; Pica, G.; Onida, F.; Cattaneo, C.; et al. Blastic plasmacytoid dendritic cell neoplasm with leukemic presentation: An Italian multicenter study. Haematologica 2013, 98, 239–246. [Google Scholar] [CrossRef] [Scilit]
- Lee, Y.J.; Kim, Y.; Park, S.H.; Jo, J.C. Plasmacytoid dendritic cell neoplasms. Blood Res. 2023, 58, 90–95. [Google Scholar] [CrossRef] [Scilit]
- Bueno, C.; Almeida, J.; Lucio, P.; Marco, J.; Garcia, R.; de Pablos, J.M.; Parreira, A.; Ramos, F.; Ruiz-Cabello, F.; Suarez-Vilela, D.; et al. Incidence and characteristics of CD4(+)/HLA DRhi dendritic cell malignancies. Haematologica 2004, 89, 58–69. [Google Scholar]
- Tang, Z.; Tang, G.; Wang, S.A.; Lu, X.; Young, K.H.; Bueso-Ramos, C.E.; Alvarado, Y.; Medeiros, L.J.; Khoury, J.D. Simultaneous deletion of 3′ETV6 and 5′EWSR1 genes in blastic plasmacytoid dendritic cell neoplasm: Case report and literature review. Mol. Cytogenet. 2016, 9, 23. [Google Scholar] [CrossRef] [Scilit]
- Leroux, D.; Mugneret, F.; Callanan, M.; Radford-Weiss, I.; Dastugue, N.; Feuillard, J.; Le Mée, F.; Plessis, G.; Talmant, P.; Gachard, N.; et al. CD4(+), CD56(+) DC2 acute leukemia is characterized by recurrent clonal chromosomal changes affecting 6 major targets: A study of 21 cases by the Groupe Français de Cytogénétique Hématologique. Blood 2002, 99, 4154–4159. [Google Scholar] [CrossRef] [Scilit]
- Petrella, T.; Bagot, M.; Willemze, R.; Beylot-Barry, M.; Vergier, B.; Delaunay, M.; Meijer, C.J.; Courville, P.; Joly, P.; Grange, F.; et al. Blastic NK-cell lymphomas (agranular CD4+CD56+ hematodermic neoplasms): A review. Am. J. Clin. Pathol. 2005, 123, 662–675. [Google Scholar] [CrossRef]
- Alayed, K.; Patel, K.P.; Konoplev, S.; Singh, R.R.; Routbort, M.J.; Reddy, N.; Pemmaraju, N.; Zhang, L.; Shaikh, A.A.; Aladily, T.N.; et al. TET2 mutations, myelodysplastic features, and a distinct immunoprofile characterize blastic plasmacytoid dendritic cell neoplasm in the bone marrow. Am. J. Hematol. 2013, 88, 1055–1061. [Google Scholar] [CrossRef] [Scilit]
- Bohlander, S.K. ETV6: A versatile player in leukemogenesis. Semin. Cancer Biol. 2005, 15, 162–174. [Google Scholar] [CrossRef] [Scilit]
- Ceribelli, M.; Hou, Z.E.; Kelly, P.N.; Huang, D.W.; Wright, G.; Ganapathi, K.; Evbuomwan, M.O.; Pittaluga, S.; Shaffer, A.L.; Marcucci, G.; et al. A Druggable TCF4- and BRD4-Dependent Transcriptional Network Sustains Malignancy in Blastic Plasmacytoid Dendritic Cell Neoplasm. Cancer Cell 2016, 30, 764–778. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Beziat, G.; Ysebaert, L. Tagraxofusp for the Treatment of Blastic Plasmacytoid Dendritic Cell Neoplasm (BPDCN): A Brief Report on Emerging Data. OncoTargets Ther. 2020, 13, 5199–5205. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Montero, J.; Stephansky, J.; Cai, T.; Griffin, G.K.; Cabal-Hierro, L.; Togami, K.; Hogdal, L.J.; Galinsky, I.; Morgan, E.A.; Aster, J.C.; et al. Blastic Plasmacytoid Dendritic Cell Neoplasm Is Dependent on BCL2 and Sensitive to Venetoclax. Cancer Discov. 2017, 7, 156–164. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wang, Y.; Xiao, L.; Yin, L.; Zhou, L.; Deng, Y.; Deng, H. Diagnosis, treatment, and genetic characteristics of blastic plasmacytoid dendritic cell neoplasm: A review. Medicine 2023, 102, e32904. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Pemmaraju, N. Novel Pathways and Potential Therapeutic Strategies for Blastic Plasmacytoid Dendritic Cell Neoplasm (BPDCN): CD123 and Beyond. Curr. Hematol. Malig. Rep. 2017, 12, 510–512. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Zhao, Z.; Fowle, H.; Valentine, H.; Liu, Z.; Tan, Y.; Pei, J.; Badal, S.; Testa, J.R.; Graña, X. Immortalization of human primary prostate epithelial cells via CRISPR inactivation of the CDKN2A locus and expression of telomerase. Prostate Cancer Prostatic Dis. 2021, 24, 233–243. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Arber, D.A.; Orazi, A.; Hasserjian, R.; Thiele, J.; Borowitz, M.J.; Le Beau, M.M.; Bloomfield, C.D.; Cazzola, M.; Vardiman, J.W. The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia. Blood 2016, 127, 2391–2405. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Zhou, C.C.; Xiong, Q.C.; Zhu, X.X.; Du, W.; Deng, P.; Li, X.B.; Jiang, Y.Z.; Zou, S.J.; Wang, C.Y.; Yuan, Q. AFF1 and AFF4 differentially regulate the osteogenic differentiation of human MSCs. Bone Res. 2017, 5, 17044. [Google Scholar] [CrossRef] [Scilit]
- Fang, Y.; Cao, H.; Gong, X.; Chen, Y.; Zhuang, Y.; Zhou, S.; Chen, Y.; Jiang, Y.; Ji, X.; Peng, H.; et al. AFF4 Predicts the Prognosis of Colorectal Cancer Patients and Suppresses Colorectal Cancer Metastasis via Promoting CDH1 Expression. Front. Oncol. 2022, 12, 797392. [Google Scholar] [CrossRef] [Scilit]
- Deng, P.; Wang, J.; Zhang, X.; Wu, X.; Ji, N.; Li, J.; Zhou, M.; Jiang, L.; Zeng, X.; Chen, Q. AFF4 promotes tumorigenesis and tumor-initiation capacity of head and neck squamous cell carcinoma cells by regulating SOX2. Carcinogenesis 2018, 39, 937–947. [Google Scholar] [CrossRef] [Scilit]
- Cheng, M.; Sheng, L.; Gao, Q.; Xiong, Q.; Zhang, H.; Wu, M.; Liang, Y.; Zhu, F.; Zhang, Y.; Zhang, X.; et al. The m(6)A methyltransferase METTL3 promotes bladder cancer progression via AFF4/NF-κB/MYC signaling network. Oncogene 2019, 38, 3667–3680. [Google Scholar] [CrossRef] [Scilit]
- Romeo, G.; Fiorucci, G.; Chiantore, M.V.; Percario, Z.A.; Vannucchi, S.; Affabris, E. IRF-1 as a negative regulator of cell proliferation. J. Interferon Cytokine Res. Off. J. Int. Soc. Interferon Cytokine Res. 2002, 22, 39–47. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Tzoanopoulos, D.; Speletas, M.; Arvanitidis, K.; Veiopoulou, C.; Kyriaki, S.; Thyphronitis, G.; Sideras, P.; Kartalis, G.; Ritis, K. Low expression of interferon regulatory factor-1 and identification of novel exons skipping in patients with chronic myeloid leukaemia. Br. J. Haematol. 2002, 119, 46–53. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Boultwood, J.; Fidler, C.; Lewis, S.; MacCarthy, A.; Sheridan, H.; Kelly, S.; Oscier, D.; Buckle, V.J.; Wainscoat, J.S. Allelic loss of IRF1 in myelodysplasia and acute myeloid leukemia: Retention of IRF1 on the 5q- chromosome in some patients with the 5q-syndrome. Blood 1993, 82, 2611–2616. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Alsamman, K.; El-Masry, O.S. Interferon regulatory factor 1 inactivation in human cancer. Biosci. Rep. 2018, 38, BSR20171672. [Google Scholar] [CrossRef] [Scilit]
- AbuSara, N.; Razavi, S.; Derwish, L.; Komatsu, Y.; Licursi, M.; Hirasawa, K. Restoration of IRF1-dependent anticancer effects by MEK inhibition in human cancer cells. Cancer Lett. 2015, 357, 575–581. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Khoury, J.D.; Solary, E.; Abla, O.; Akkari, Y.; Alaggio, R.; Apperley, J.F.; Bejar, R.; Berti, E.; Busque, L.; Chan, J.K.C.; et al. The 5th edition of the World Health Organization Classification of Haematolymphoid Tumours: Myeloid and Histiocytic/Dendritic Neoplasms. Leukemia 2022, 36, 1703–1719. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Sweet, K. Blastic plasmacytoid dendritic cell neoplasm: Diagnosis, manifestations, and treatment. Curr. Opin. Hematol. 2020, 27, 103–107. [Google Scholar] [CrossRef] [Scilit]
- Khoury, J.D. Blastic Plasmacytoid Dendritic Cell Neoplasm. Curr. Hematol. Malig. Rep. 2018, 13, 477–483. [Google Scholar] [CrossRef] [Scilit]
- Pemmaraju, N.; Kantarjian, H.M.; Cortes, J.E.; Duvic, M.; Khoury, J.D.; Patel, K.; Daver, N.; O’Brien, S.; Pierce, S.; Garcia-Manero, G. Blastic plasmacytoid dendritic cell neoplasm (BPDCN): A large single-center experience: Analysis of clinical and molecular characteristics and patient outcomes. Blood 2015, 126, 3746. [Google Scholar] [CrossRef] [Scilit]
- Menezes, J.; Acquadro, F.; Wiseman, M.; Gómez-López, G.; Salgado, R.N.; Talavera-Casañas, J.G.; Buño, I.; Cervera, J.V.; Montes-Moreno, S.; Hernández-Rivas, J.M.; et al. Exome sequencing reveals novel and recurrent mutations with clinical impact in blastic plasmacytoid dendritic cell neoplasm. Leukemia 2014, 28, 823–829. [Google Scholar] [CrossRef] [Scilit]
- Zhang, X.; Sun, J.; Yang, M.; Wang, L.; Jin, J. New perspectives in genetics and targeted therapy for blastic plasmacytoid dendritic cell neoplasm. Crit. Rev. Oncol./Hematol. 2020, 149, 102928. [Google Scholar] [CrossRef] [Scilit]
- Stenzinger, A.; Endris, V.; Pfarr, N.; Andrulis, M.; Jöhrens, K.; Klauschen, F.; Siebolts, U.; Wolf, T.; Koch, P.S.; Schulz, M.; et al. Targeted ultra-deep sequencing reveals recurrent and mutually exclusive mutations of cancer genes in blastic plasmacytoid dendritic cell neoplasm. Oncotarget 2014, 5, 6404–6413. [Google Scholar] [CrossRef] [Scilit]
- Zhang, X.; Zhu, Y.; Yang, M.; Wang, L.; Jin, J.; Yu, W. Mutational analysis in different foci revealing the clonal evolution of blastic plasmacytoid dendritic cell neoplasm. Leuk. Lymphoma 2021, 62, 988–991. [Google Scholar] [CrossRef] [Scilit]
- Sakamoto, K.; Katayama, R.; Asaka, R.; Sakata, S.; Baba, S.; Nakasone, H.; Koike, S.; Tsuyama, N.; Dobashi, A.; Sasaki, M.; et al. Recurrent 8q24 rearrangement in blastic plasmacytoid dendritic cell neoplasm: Association with immunoblastoid cytomorphology, MYC expression, and drug response. Leukemia 2018, 32, 2590–2603. [Google Scholar] [CrossRef] [Scilit]
- Suzuki, K.; Suzuki, Y.; Hama, A.; Muramatsu, H.; Nakatochi, M.; Gunji, M.; Ichikawa, D.; Hamada, M.; Taniguchi, R.; Kataoka, S.; et al. Recurrent MYB rearrangement in blastic plasmacytoid dendritic cell neoplasm. Leukemia 2017, 31, 1629–1633. [Google Scholar] [CrossRef] [Scilit]
- Fiandrino, G.; Arra, M.; Riboni, R.; Lucioni, M.; Dallera, E.; Arcaini, L.; Berti, E.; Paulli, M. Absence of MYD88 L265P mutation in blastic plasmacytoid dendritic cell neoplasm. Br. J. Dermatol. 2013, 168, 883–884. [Google Scholar] [CrossRef] [Scilit]
- Ngo, V.N.; Young, R.M.; Schmitz, R.; Jhavar, S.; Xiao, W.; Lim, K.H.; Kohlhammer, H.; Xu, W.; Yang, Y.; Zhao, H.; et al. Oncogenically active MYD88 mutations in human lymphoma. Nature 2011, 470, 115–119. [Google Scholar] [CrossRef] [Scilit]
- Yan, Q.; Huang, Y.; Watkins, A.J.; Kocialkowski, S.; Zeng, N.; Hamoudi, R.A.; Isaacson, P.G.; de Leval, L.; Wotherspoon, A.; Du, M.Q. BCR and TLR signaling pathways are recurrently targeted by genetic changes in splenic marginal zone lymphomas. Haematologica 2012, 97, 595–598. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wang, L.; Lawrence, M.S.; Wan, Y.; Stojanov, P.; Sougnez, C.; Stevenson, K.; Werner, L.; Sivachenko, A.; DeLuca, D.S.; Zhang, L.; et al. SF3B1 and other novel cancer genes in chronic lymphocytic leukemia. N. Engl. J. Med. 2011, 365, 2497–2506. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Treon, S.P.; Xu, L.; Yang, G.; Zhou, Y.; Liu, X.; Cao, Y.; Sheehy, P.; Manning, R.J.; Patterson, C.J.; Tripsas, C.; et al. MYD88 L265P somatic mutation in Waldenström’s macroglobulinemia. N. Engl. J. Med. 2012, 367, 826–833. [Google Scholar] [CrossRef] [Scilit]
- Muñoz, L.; Nomdedéu, J.F.; López, O.; Carnicer, M.J.; Bellido, M.; Aventín, A.; Brunet, S.; Sierra, J. Interleukin-3 receptor alpha chain (CD123) is widely expressed in hematologic malignancies. Haematologica 2001, 86, 1261–1269. [Google Scholar]
- Swerdlow, S.H.; Campo, E.; Harris, N.L.; Jaffe, E.S.; Pileri, S.A.; Stein, H.; Thiele, J. (Eds.) WHO Classification of Tumours of Haematopoietic and Lymphoid Tissues, 4th ed.; WHO Press: Geneve, Switzerland, 2017; Volume 2. [Google Scholar]
- Sapienza, M.R.; Fuligni, F.; Agostinelli, C.; Tripodo, C.; Righi, S.; Laginestra, M.A.; Pileri, A., Jr.; Mancini, M.; Rossi, M.; Ricci, F.; et al. Molecular profiling of blastic plasmacytoid dendritic cell neoplasm reveals a unique pattern and suggests selective sensitivity to NF-kB pathway inhibition. Leukemia 2014, 28, 1606–1616. [Google Scholar] [CrossRef] [Scilit]
- Testa, U.; Pelosi, E.; Castelli, G. CD123 as a Therapeutic Target in the Treatment of Hematological Malignancies. Cancers 2019, 11, 1358. [Google Scholar] [CrossRef] [Scilit]
- Adimora, I.J.; Wilson, N.R.; Pemmaraju, N. Blastic plasmacytoid dendritic cell neoplasm (BPDCN): A promising future in the era of targeted therapeutics. Cancer 2022, 128, 3019–3026. [Google Scholar] [CrossRef] [Scilit]
- Taylor, J.; Haddadin, M.; Upadhyay, V.A.; Grussie, E.; Mehta-Shah, N.; Brunner, A.M.; Louissaint, A., Jr.; Lovitch, S.B.; Dogan, A.; Fathi, A.T.; et al. Multicenter analysis of outcomes in blastic plasmacytoid dendritic cell neoplasm offers a pretargeted therapy benchmark. Blood 2019, 134, 678–687. [Google Scholar] [CrossRef] [Scilit]
- Lin, X.; Wang, L.; Hu, Q.; Zhu, J.; Tao, Y.; Huang, L.; Niu, T. Incidence, prognostic factors, and survival outcomes in patients with blastic plasmacytoid dendritic cell neoplasm: A retrospective study in the Surveillance, Epidemiology, and End Results database. Eur. J. Haematol. 2023, 110, 743–753. [Google Scholar] [CrossRef] [Scilit]
- Yin, C.C.; Pemmaraju, N.; You, M.J.; Li, S.; Xu, J.; Wang, W.; Tang, Z.; Alswailmi, O.; Bhalla, K.N.; Qazilbash, M.H.; et al. Integrated Clinical Genotype-Phenotype Characteristics of Blastic Plasmacytoid Dendritic Cell Neoplasm. Cancers 2021, 13, 5888. [Google Scholar] [CrossRef] [Scilit]
- Julia, F.; Dalle, S.; Duru, G.; Balme, B.; Vergier, B.; Ortonne, N.; Vignon-Pennamen, M.D.; Costes-Martineau, V.; Lamant, L.; Dalac, S.; et al. Blastic plasmacytoid dendritic cell neoplasms: Clinico-immunohistochemical correlations in a series of 91 patients. Am. J. Surg. Pathol. 2014, 38, 673–680. [Google Scholar] [CrossRef] [Scilit]
- Lucioni, M.; Novara, F.; Fiandrino, G.; Riboni, R.; Fanoni, D.; Arra, M.; Venegoni, L.; Nicola, M.; Dallera, E.; Arcaini, L.; et al. Twenty-one cases of blastic plasmacytoid dendritic cell neoplasm: Focus on biallelic locus 9p21.3 deletion. Blood 2011, 118, 4591–4594. [Google Scholar] [CrossRef] [Scilit]


| Gene | Protein Change | cDNA Change | Allele Frequency | Reference |
|---|---|---|---|---|
| MYD88 | p.Ala6fs | c.10_28delGACCGCGCTGAGGCTCCAG | 27.5% | ENST00000396334 |
| TET2 | p.Ser825* | c.2474C>G | 22.5% | ENST00000380013 |
| TET2 | p.Pro851fs | c.2551delC | 22% | ENST00000380013 |
| ASXL1 | p.Arg693* | c.2077C>T | 19% | ENST00000375687 |
| Gene | Protein Change | cDNA Change | Allele Frequency | Reference |
|---|---|---|---|---|
| KMT2C | p.Tyr366Cys | c.1097A>G | 6.4% | ENST00000262189 |
| TET2 | p.Ser825* | c.2474C>G | 46.1% | ENST00000380013 |
| TET2 | p.Pro851fs | c.2551delC | 44.0% | ENST00000380013 |
| ASXL1 | p.Arg693* | c.2077C>T | 44.9% | ENST00000375687 |
| GNAS | p.Ala331Thr | c.991G>A | 47.0% | ENST00000371100 |
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Sahin, Y.; Wang, Y.L.; Pei, J.; Mansoor, N.; Styler, M.; Testa, J.R.; Nejati, R. Multiple Genomic Alterations, Including a Novel AFF4::IRF1 Fusion Gene, in a Treatment-Refractory Blastic Plasmacytoid Dendritic-Cell Neoplasm: A Case Report and Literature Review. Int. J. Mol. Sci. 2024, 25, 305. https://doi.org/10.3390/ijms25010305
Sahin Y, Wang YL, Pei J, Mansoor N, Styler M, Testa JR, Nejati R. Multiple Genomic Alterations, Including a Novel AFF4::IRF1 Fusion Gene, in a Treatment-Refractory Blastic Plasmacytoid Dendritic-Cell Neoplasm: A Case Report and Literature Review. International Journal of Molecular Sciences. 2024; 25(1):305. https://doi.org/10.3390/ijms25010305
Chicago/Turabian StyleSahin, Yavuz, Y. Lynn Wang, Jianming Pei, Nashwa Mansoor, Michael Styler, Joseph R. Testa, and Reza Nejati. 2024. "Multiple Genomic Alterations, Including a Novel AFF4::IRF1 Fusion Gene, in a Treatment-Refractory Blastic Plasmacytoid Dendritic-Cell Neoplasm: A Case Report and Literature Review" International Journal of Molecular Sciences 25, no. 1: 305. https://doi.org/10.3390/ijms25010305
APA StyleSahin, Y., Wang, Y. L., Pei, J., Mansoor, N., Styler, M., Testa, J. R., & Nejati, R. (2024). Multiple Genomic Alterations, Including a Novel AFF4::IRF1 Fusion Gene, in a Treatment-Refractory Blastic Plasmacytoid Dendritic-Cell Neoplasm: A Case Report and Literature Review. International Journal of Molecular Sciences, 25(1), 305. https://doi.org/10.3390/ijms25010305

