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Review
Peer-Review Record

Targeting Autophagy in Breast Cancer

Int. J. Mol. Sci. 2020, 21(21), 7836; https://doi.org/10.3390/ijms21217836
by Stefania Cocco 1,*, Alessandra Leone 2, Michela Piezzo 1, Roberta Caputo 1, Vincenzo Di Lauro 1, Francesca Di Rella 1, Giuseppina Fusco 1, Monica Capozzi 1, Germira di Gioia 1, Alfredo Budillon 2 and Michelino De Laurentiis 1,*
Reviewer 1: Anonymous
Int. J. Mol. Sci. 2020, 21(21), 7836; https://doi.org/10.3390/ijms21217836
Submission received: 30 September 2020 / Revised: 19 October 2020 / Accepted: 21 October 2020 / Published: 22 October 2020

Round 1

Reviewer 1 Report

The review is very interesting and very good structurate. I suggest few minor language and editing corrections. 

Line 35.  In this sentence the author's should change categorize with classificated. In mammalian cells, autophagy can be categorized into three main ways:

Line 36. The  sentence is too long and need to be rearrange. Especially Of these, shoud be replaced.

Line 49. ~16-20 high conserved  autophagy-related genes (ATG)-one space less

Line 51. Specified this abbreviation because it's first time that you mention it- the ULK1 kinase complex 

Line 80 These subtitle needs to be rearrange- 2. Main mechanisms of induction of Autophagy

Line 122. Initiation of the sentence needs to be rearrange with some synonyms because it's not clear. Through its role in quality control,

Line 148 3.1 Autophagic cell death and line 3.2 Targeting autophagy for cancer prevention-these paragraphs should be fusiused because they are too dispersive and long. The main goal of massage should be more concrete.

Line 245. The  sentence is too confused so you need to rearrange it.

Line 398. Can you maybe improve the conclusion message here and include a statement or your interpretation. These two sentence are very hard to follow and do not sand a right and critical overview to the scientific community.

New targeted drugs for breast cancer, such as CDK4/6 inhibitors,
 PI3K/AKT inhibitors, new anti-HER2 drugs and immunocheckpoint inhibitors, may induce, or interfere with, autophagy and we have reviewed how autophagy may play a key role in the mechanisms of resistance to these drugs. Clinical applications of autophagy inhibition, however, have been so far disappointing, due either to the non-efficient in vivo autophagy inhibition or to the toxicity of the tested drugs.

Author Response

The review is very interesting and very good structurate. I suggest few minor language and editing corrections. 

Line 35.  In this sentence the author's should change categorize with classificated. In mammalian cells, autophagy can be categorized into three main ways:

Updated

Line 36. The  sentence is too long and need to be rearrange. Especially Of these, shoud be replaced.

Updated

Line 49. ~16-20 high conserved  autophagy-related genes (ATG)-one space less

Updated

Line 51. Specified this abbreviation because it's first time that you mention it- the ULK1 kinase complex 

Updated

Line 80 These subtitle needs to be rearrange- 2. Main mechanisms of induction of Autophagy

We changed the title in Main mechanisms inducing Autophagy

Line 122. Initiation of the sentence needs to be rearrange with some synonyms because it's not clear. Through its role in quality control,

We changed the sentence, please refer to line 114,115

Line 148 3.1 Autophagic cell death and line 3.2 Targeting autophagy for cancer prevention-these paragraphs should be fusiused because they are too dispersive and long. The main goal of massage should be more concrete.

We reduced the paragraph 3.1 and fused it with 3., while we suppose that paragraph 3.2 should be separated because it addressed a different and relevant topic.

Line 245. The  sentence is too confused so you need to rearrange it.

Updated

Line 398. Can you maybe improve the conclusion message here and include a statement or your interpretation. These two sentence are very hard to follow and do not sand a right and critical overview to the scientific community.

New targeted drugs for breast cancer, such as CDK4/6 inhibitors,
 PI3K/AKT inhibitors, new anti-HER2 drugs and immunocheckpoint inhibitors, may induce, or interfere with, autophagy and we have reviewed how autophagy may play a key role in the mechanisms of resistance to these drugs. Clinical applications of autophagy inhibition, however, have been so far disappointing, due either to the non-efficient in vivo autophagy inhibition or to the toxicity of the tested drugs.

We changed some sentences in conclusions, as you suggested, to clarify the final message of this review.

 

Reviewer 2 Report

Targeting autophagy in breast cancer

Authors have wisely discussed the autophagic role in cancer; particularly in breast cancer. Their description provides a clear picture of both autophagy induction and inhibition capacities in breast cancer. Despite the therapeutic benefit of chemotherapeutic agents, their resistance caused by autophagy dysregulation are well captured.

 

The manuscript would be benefitted more if authors consider the minor corrections, which mentioned below.

Line 46: should be “including neurodegeneration, cancer, infectious diseases, autoimmune disease, and others (https://doi.org/10.1016/j.jaut.2018.08.009)”.

Figure 1 shows mTOR, TFEB, and LAMP2 pathways. However, the description in the figure legend in missing. Or else, appropriate references should be cited for further reading.

Line 70: phosphatidylethanolamine → phosphatidylethanolamine (PE)

Line 73: microtubule-associated protein 1 light chain 3 (LC3) → LC3

Line 74: phosphatidylethanolamine (PE) → PE

Line 77: the outer membrane is cleaved → the LC3-II bound to the outer membrane is cleaved

Line 72-79: For more information….please refer and cite this review from MDPI, https://doi.org/10.3390/cells9051321

Line 93: Beclin 1 or Beclin-1 or Beclin1…… please be uniform throughout the manuscript.

Line 98: its target genes ….what are they…. Please refer this and cite  https://doi.org/10.1126/science.1174447

Line 109: erphagy → ERphagy

Line 110: protein aggregates → protein aggregates (aggrephagy)

Line 159: other forms of cell death such ACD, → other forms of cell death, such as ACD,

Line 164, 166: cancer prevention → cancer treatment  

Line 170: class III PI3K inhibitors 3-methyladenine → class III PI3K inhibitors, e.g., 3-methyladenine

Line 172: Lysosomotropic agents such as → Lysosomotropic agents, such as

Punctuation errors are prevalent throughout the manuscript. Please correct them.

Anti-cancer (line 180, 181, 185, and other places) or anticancer (line 183, and other placess)… be uniform throughout.

Line 184: PH → pH

Line 184: typo “enzimes”

Line 185: other preclinically → other preclinical

Line 188: Adding CQ to chemotherapy increases sensitivity of various cancers to cytotoxic drugs, including lung cancer, →  Adding CQ to chemotherapeutic drugs increases sensitivity of various cancers, including lung cancer,

Line 197: in different in preclinical models → in different preclinical models

Line 213: triple negative tumors (TNBC) → triple-negative breast cancer (TNBC)

Line 236: Endocrine therapy (ET) → ET

PI3K/AKT/mTOR or PI3K-AKT/mTOR; cyclin/CDK/Rb or cyclin D/CDK/pRb …. Please be uniform

Line 286: HER2 (also known as ERBB2)… this should be explained earlier in page 6 (section 4), where it appears first.

Line 300: HER2 also activates mTOR1 or mTORC1?

Line 313: autophagy that other BC subtypes → autophagy than other breast cancer subtypes

Once abbreviated, please use acronym throughout the manuscript…e.g., chloroquine

Line 358: in vitro and in vivo → in vitro and in vivo

Line 389, 400: “in vivo” should be in italics

Table 1: results column is redundant; as only two treatment categories declared the results. Use the table legend to explain the same.  

Author Response

Authors have wisely discussed the autophagic role in cancer; particularly in breast cancer. Their description provides a clear picture of both autophagy induction and inhibition capacities in breast cancer. Despite the therapeutic benefit of chemotherapeutic agents, their resistance caused by autophagy dysregulation are well captured.

 

The manuscript would be benefitted more if authors consider the minor corrections, which mentioned below.

Line 46: should be “including neurodegeneration, cancer, infectious diseases, autoimmune disease, and others (https://doi.org/10.1016/j.jaut.2018.08.009)”.

Updated, we inserted the indicated reference (6)

Figure 1 shows mTOR, TFEB, and LAMP2 pathways. However, the description in the figure legend in missing. Or else, appropriate references should be cited for further reading.

We updated the references 12- 15

Line 70: phosphatidylethanolamine → phosphatidylethanolamine (PE) corrected

Line 73: microtubule-associated protein 1 light chain 3 (LC3) → LC3 corrected

Line 74: phosphatidylethanolamine (PE) → PE corrected

Line 77: the outer membrane is cleaved → the LC3-II bound to the outer membrane is cleaved

corrected

Line 72-79: For more information….please refer and cite this review from MDPI, https://doi.org/10.3390/cells9051321

Updated, we inserted the indicated reference (12)

Line 93: Beclin 1 or Beclin-1 or Beclin1…… please be uniform throughout the manuscript.

corrected

Line 98: its target genes ….what are they…. Please refer this and cite  https://doi.org/10.1126/science.1174447 

Updated, we inserted the indicated reference (20)

Line 109: erphagy → ERphagy Updated

Line 110: protein aggregates → protein aggregates (aggrephagy) Updated

Line 159: other forms of cell death such ACD, → other forms of cell death, such as ACD, corrected

Line 164, 166: cancer prevention → cancer treatment  corrected

Line 170: class III PI3K inhibitors 3-methyladenine → class III PI3K inhibitors, e.g., 3-methyladenine  corrected

Line 172: Lysosomotropic agents such as → Lysosomotropic agents, such as corrected

Punctuation errors are prevalent throughout the manuscript. Please correct them. Updated

Anti-cancer (line 180, 181, 185, and other places) or anticancer (line 183, and other placess)… be uniform throughout. Updated as Anti-cancer

Line 184: PH → pH Updated

Line 184: typo “enzimes” Updated

Line 185: other preclinically → other preclinical corrected

Line 188: Adding CQ to chemotherapy increases sensitivity of various cancers to cytotoxic drugs, including lung cancer, →  Adding CQ to chemotherapeutic drugs increases sensitivity of various cancers, including lung cancer,

corrected

Line 197: in different in preclinical models → in different preclinical models corrected

Line 213: triple negative tumors (TNBC) → triple-negative breast cancer (TNBC) updated

Line 236: Endocrine therapy (ET) → ET

corrected

PI3K/AKT/mTOR or PI3K-AKT/mTOR; cyclin/CDK/Rb or cyclin D/CDK/pRb …. Please be uniform

Updated PI3K/AKT/mTOR and cyclin D/CDK/pRb

Line 286: HER2 (also known as ERBB2)… this should be explained earlier in page 6 (section 4), where it appears first.  

 we indicated “HER2-enriched, which overexpress the ERBB2 oncogene” line 203

Line 300: HER2 also activates mTOR1 or mTORC1? Corrected to mTORC1

Line 313: autophagy that other BC subtypes → autophagy than other breast cancer subtypes

corrected

Once abbreviated, please use acronym throughout the manuscript…e.g., chloroquine

updated

Line 358: in vitro and in vivo → in vitro and in vivo 

updated

Line 389, 400: “in vivo” should be in italics

updated

Table 1: results column is redundant; as only two treatment categories declared the results. Use the table legend to explain the same.

 Updated as you suggested

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