Plant Proteomic Research 2.0: Trends and Perspectives
Author Contributions
Acknowledgments
Conflicts of Interest
References
- Komatsu, S.; Hossain, Z. Preface—Plant Proteomic Research. Int. J. Mol. Sci. 2017, 18, 88. [Google Scholar] [CrossRef]
- Jorrin-Novo, J.V.; Komatsu, S.; Sanchez-Lucas, R.; Rodríguez de Francisco, L.E. Gel electrophoresis-based plant proteomics: Past, present, and future. Happy 10th anniversary Journal of Proteomics! J. Proteomics 2019, 198, 1–10. [Google Scholar] [CrossRef]
- Rey, M.; Castillejo, M.; Sánchez-Lucas, R.; Guerrero-Sanchez, V.; López-Hidalgo, C.; Romero-Rodríguez, C.; Valero-Galván, J.; Sghaier-Hammami, B.; Simova-Stoilova, L.; Echevarría-Zomeño, S.; et al. Proteomics, Holm oak (Quercus ilex L.) and other recalcitrant and orphan forest tree species: How do they see each other? Int. J. Mol. Sci. 2019, 20, 692. [Google Scholar] [CrossRef]
- Khoza, T.; Dubery, I.; Piater, L. Identification of candidate ergosterol-responsive proteins associated with the plasma membrane of Arabidopsis thaliana. Int. J. Mol. Sci. 2019, 20, 1302. [Google Scholar] [CrossRef]
- Fan, K.; Wang, K.; Chang, W.; Yang, J.; Yeh, C.; Cheng, K.; Hung, S.; Chen, Y. Application of data-independent acquisition approach to study the proteome changes from early to later phases of tomato pathogenesis responses. Int. J. Mol. Sci. 2019, 20, 863. [Google Scholar] [CrossRef] [PubMed]
- Singh, P.; Song, Q.; Singh, R.; Li, H.; Solanki, M.; Malviya, M.; Verma, K.; Yang, L.; Li, Y. Proteomic analysis of the resistance mechanisms in sugarcane during Sporisorium scitamineum infection. Int. J. Mol. Sci. 2019, 20, 569. [Google Scholar]
- Xiao, C.; Gao, J.; Zhang, Y.; Wang, Z.; Zhang, D.; Chen, Q.; Ye, X.; Xu, Y.; Yang, G.; Yan, L.; et al. Quantitative proteomics of potato leaves infected with phytophthora infestans provides insights into coordinated and altered protein expression during early and late disease stages. Int. J. Mol. Sci. 2019, 20, 136. [Google Scholar] [CrossRef] [PubMed]
- Balakireva, A.; Deviatkin, A.; Zgoda, V.; Kartashov, M.; Zhemchuzhina, N.; Dzhavakhiya, V.; Golovin, A.; Zamyatnin, A. Proteomics analysis reveals that caspase-like and metacaspase-like activities are dispensable for activation of proteases involved in early response to biotic stress in Triticum aestivum L. Int. J. Mol. Sci. 2018, 19, 3991. [Google Scholar] [CrossRef] [PubMed]
- Wang, X.; Li, M.; Liu, X.; Zhang, L.; Duan, Q.; Zhang, J. Quantitative proteomic analysis of castor (Ricinus communis L.) seeds during early imbibition provided novel insights into cold stress response. Int. J. Mol. Sci. 2019, 20, 355. [Google Scholar] [CrossRef]
- Gao, F.; Ma, P.; Wu, Y.; Zhou, Y.; Zhang, G. Quantitative proteomic analysis of the response to cold stress in jojoba, a tropical woody crop. Int. J. Mol. Sci. 2019, 20, 243. [Google Scholar] [CrossRef]
- Inomata, T.; Baslam, M.; Masui, T.; Koshu, T.; Takamatsu, T.; Kaneko, K.; Pozueta-Romero, J.; Mitsui, T. Proteomics analysis reveals non-controlled activation of photosynthesis and protein synthesis in a rice npp1 mutant under high temperature and elevated CO2 conditions. Int. J. Mol. Sci. 2018, 19, 2655. [Google Scholar] [CrossRef]
- Hao, J.; Zhang, L.; Li, P.; Sun, Y.; Li, J.; Qin, X.; Wang, L.; Qi, Z.; Xiao, S.; Han, Y.; et al. Quantitative proteomics analysis of lettuce (Lactuca sativa L.) reveals molecular basis-associated auxin and photosynthesis with bolting induced by high temperature. Int. J. Mol. Sci. 2018, 19, 2967. [Google Scholar] [CrossRef]
- Zenda, T.; Liu, S.; Wang, X.; Jin, H.; Liu, G.; Duan, H. Comparative proteomic and physiological analyses of two divergent maize inbred lines provide more insights into drought-stress tolerance mechanisms. Int. J. Mol. Sci. 2018, 19, 3225. [Google Scholar] [CrossRef]
- Chen, X.; Yang, B.; Huang, W.; Wang, T.; Li, Y.; Zhong, Z.; Yang, L.; Li, S.; Tian, J. Comparative proteomic analysis reveals elevated capacity for photosynthesis in polyphenol oxidase expression-silenced Clematis terniflora DC. leaves. Int. J. Mol. Sci. 2018, 19, 3897. [Google Scholar] [CrossRef]
- Waqas, M.; Feng, S.; Amjad, H.; Letuma, P.; Zhan, W.; Li, Z.; Fang, C.; Arafat, Y.; Khan, M.; Tayyab, M.; et al. Protein phosphatase (PP2C9) induces protein expression differentially to mediate nitrogen utilization efficiency in rice under nitrogen-deficient condition. Int. J. Mol. Sci. 2018, 19, 2827. [Google Scholar] [CrossRef]
- Coleto, I.; Vega-Mas, I.; Glauser, G.; González-Moro, M.; Marino, D.; Ariz, I. New Insights on Arabidopsis thaliana root adaption to ammonium nutrition by the use of a quantitative proteomic approach. Int. J. Mol. Sci. 2019, 20, 814. [Google Scholar] [CrossRef]
- Gutsch, A.; Zouaghi, S.; Renaut, J.; Cuypers, A.; Hausman, J.; Sergeant, K. Changes in the proteome of medicago sativa leaves in response to long-term cadmium exposure using a cell-wall targeted approach. Int. J. Mol. Sci. 2018, 19, 2498. [Google Scholar] [CrossRef]
- Jhanzab, H.; Razzaq, A.; Bibi, Y.; Yasmeen, F.; Yamaguchi, H.; Hitachi, K.; Tsuchida, K.; Komatsu, S. Proteomic analysis of the effect of inorganic and organic chemicals on silver nanoparticles in wheat. Int. J. Mol. Sci. 2019, 20, 825. [Google Scholar] [CrossRef]
- Aslam, M.; Rehman, S.; Khatoon, A.; Jamil, M.; Yamaguchi, H.; Hitachi, K.; Tsuchida, K.; Li, X.; Sunohara, Y.; Matsumoto, H.; et al. Molecular responses of maize shoot to a plant derived smoke solution. Int. J. Mol. Sci. 2019, 20, 1319. [Google Scholar] [CrossRef]
- Yang, X.; Meng, W.; Zhao, M.; Zhang, A.; Liu, W.; Xu, Z.; Wang, Y.; Ma, J. Proteomics analysis to identify proteins and pathways associated with the novel lesion mimic mutant E40 in rice using iTRAQ-based strategy. Int. J. Mol. Sci. 2019, 20, 1294. [Google Scholar] [CrossRef]
- Ishikawa, S.; Barrero, J.; Takahashi, F.; Peck, S.; Gubler, F.; Shinozaki, K.; Umezawa, T. Comparative phosphoproteomic analysis of barley embryos with different dormancy during imbibition. Int. J. Mol. Sci. 2019, 20, 451. [Google Scholar] [CrossRef]
- Zhu, W.; Zhong, Z.; Liu, S.; Yang, B.; Komatsu, S.; Ge, Z.; Tian, J. Organ-Specific Analysis of Morus alba using a gel-free/label-free proteomic technique. Int. J. Mol. Sci. 2019, 20, 365. [Google Scholar] [CrossRef]
- Mamontova, T.; Lukasheva, E.; Mavropolo-Stolyarenko, G.; Proksch, C.; Bilova, T.; Kim, A.; Babakov, V.; Grishina, T.; Hoehenwarter, W.; Medvedev, S.; et al. Proteome map of pea (Pisum sativum L.) embryos containing different amounts of residual chlorophylls. Int. J. Mol. Sci. 2018, 19, 4066. [Google Scholar] [CrossRef]
- Liu, B.; Shan, X.; Wu, Y.; Su, S.; Li, S.; Liu, H.; Han, J.; Yuan, Y. iTRAQ-Based Quantitative proteomic analysis of embryogenic and non-embryogenic calli derived from a maize (Zea mays L.) inbred line Y423. Int. J. Mol. Sci. 2018, 19, 4004. [Google Scholar] [CrossRef]
- Dong, F.; Shi, Y.; Liu, M.; Fan, K.; Zhang, Q.; Ruan, J. iTRAQ-based quantitative proteomics analysis reveals the mechanism underlying the weakening of carbon metabolism in chlorotic tea leaves. Int. J. Mol. Sci. 2018, 19, 3943. [Google Scholar] [CrossRef]
- Li, M.; Sun, Y.; Lu, X.; Debnath, B.; Mitra, S.; Qiu, D. Proteomics reveal the profiles of color change in Brunfelsia acuminata flowers. Int. J. Mol. Sci. 2019, 20, 2000. [Google Scholar] [CrossRef]
- Bernal, J.; Mouzo, D.; López-Pedrouso, M.; Franco, D.; García, L.; Zapata, C. The major storage protein in potato tuber is mobilized by a mechanism dependent on its phosphorylation status. Int. J. Mol. Sci. 2019, 20, 1889. [Google Scholar] [CrossRef]
- Chen, C.; Zeng, L.; Ye, Q. Proteomic and biochemical changes during senescence of phalaenopsis ‘Red Dragon’ petals. Int. J. Mol. Sci. 2018, 19, 1317. [Google Scholar] [CrossRef]
- Mousavi, S.A.; Pouya, F.M.; Ghaffari, M.R.; Mirzaei, M.; Ghaffari, A.; Alikhani, M.; Ghareyazie, M.; Komatsu, S.; Haynes, P.A.; Salekdeh, G.H. PlantPReS: A database for plant proteome response to stress. J. Proteomics 2016, 143, 69–72. [Google Scholar] [CrossRef]
- Matsuta, S.; Nishiyama, A.; Chaya, G.; Itoh, T.; Miura, K.; Iwasaki, Y. Characterization of heterotrimeric G protein γ4 subunit in rice. Int. J. Mol. Sci. 2018, 19, 3596. [Google Scholar] [CrossRef]
- Nishiyama, A.; Matsuta, S.; Chaya, G.; Itoh, T.; Miura, K.; Iwasaki, Y. Identification of heterotrimeric G protein γ3 subunit in rice plasma membrane. Int. J. Mol. Sci. 2018, 19, 3591. [Google Scholar] [CrossRef]
- Shi, J.; Zhao, L.; Yan, B.; Zhu, Y.; Ma, H.; Chen, W.; Ruan, S. Comparative transcriptome analysis reveals the transcriptional alterations in growth- and development-related genes in sweet potato plants infected and non-infected by SPFMV, SPV2, and SPVG. Int. J. Mol. Sci. 2019, 20, 1012. [Google Scholar] [CrossRef]
- Rahiminejad, M.; Ledari, M.T.; Mirzaei, M.; Ghorbanzadeh, Z.; Kavousi, K.; Ghaffari, M.R.; Haynes, P.A.; Komatsu, S.; Salekdeh, G.H. The quest for missing proteins in rice. Mol. Plant. 2019, 12, 4–6. [Google Scholar] [CrossRef]
© 2019 by the author. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
Share and Cite
Komatsu, S. Plant Proteomic Research 2.0: Trends and Perspectives. Int. J. Mol. Sci. 2019, 20, 2495. https://doi.org/10.3390/ijms20102495
Komatsu S. Plant Proteomic Research 2.0: Trends and Perspectives. International Journal of Molecular Sciences. 2019; 20(10):2495. https://doi.org/10.3390/ijms20102495
Chicago/Turabian StyleKomatsu, Setsuko. 2019. "Plant Proteomic Research 2.0: Trends and Perspectives" International Journal of Molecular Sciences 20, no. 10: 2495. https://doi.org/10.3390/ijms20102495