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Editorial

New Synthetic Methodology for Drug-like Molecules

by
Graeme Barker
1,* and
Simona Rapposelli
2,*
1
Institute of Chemical Sciences, Heriot-Watt University, Riccarton, Edinburgh EH14 4AS, UK
2
Department of Pharmacy, University of Pisa, 56126 Pisa, Italy
*
Authors to whom correspondence should be addressed.
Molecules 2023, 28(15), 5632; https://doi.org/10.3390/molecules28155632
Submission received: 13 July 2023 / Accepted: 20 July 2023 / Published: 26 July 2023
(This article belongs to the Special Issue New Synthetic Methodology for Drug-Like Molecules)
The field of synthetic methodology plays a pivotal role in the quest for safe and effective drugs. It provides chemists with the tools and techniques necessary to create complex molecular architectures, enabling the discovery and production of innovative drug-like molecules. Since 2000, seven Nobel prizes in chemistry have been awarded for advances in fields that are directly relevant to modern pharmaceutical synthesis—in 2001, 2005, 2010, 2016, 2018, 2021 and 2022. This Special Issue of Molecules is dedicated to highlighting the latest advancements in synthetic methodology, which are propelling medicinal chemistry to new heights.
In this Special Issue, a diverse array of new methodologies for the synthesis of drug-like molecules is reported, highlighting the breadth of modern synthesis. Xu reviewed synthetic methods of preparing phosphonopeptides [1], phosphonamidite analogues of peptides that are widely applied in a range of therapeutic roles. Transition metal catalysis remains a cornerstone of synthesis, and herein, building on previous work in this field [2,3,4], Kharitonov and Shults report a Pd-catalysed route to isospongian diterpenoids that bear a marginatafuran skeleton reminiscent of furanyl analogues of steroids via a Heck–Suzuki cascade using readily available bromolabertianic acid [5]. Previous syntheses of these unusual structures relied on toxic Hg- or Sn-chemistry or expensive Indium reagents [6,7,8], and this convenient new route will facilitate the investigation of their biological activities. The importance of synthesis for investigating biological activity is further highlighted by France and co-workers [9], who studied the synthesis and enantiomeric resolution of both enantiomers and the racemate of PF74, a capsid-targeting inhibitor of HIV replication [10]. In so doing, they have addressed key questions regarding the importance of the PF74 stereogenic centre, and the (S)-enantiomer was revealed to be over an order of magnitude more active than the (R)-enantiomer.
Environmental concerns and the high cost of reagents have led to increased interest in transition metal-free synthetic methodologies in recent years, and several manuscripts in this Special Issue report developments in the utilization of this strategy. Zhao, Horsfall and Hulme report on the synthesis of spirocyclic analogues of cephalosporin antibiotics using an SN2/conjugate addition sequence to induce the reaction of catechols with a 3-chloromethylcephalosporin substrate [11]. The importance of cephalosporins in modern medicine is widely understood, while the advantages of the inherently 3-dimensional structure of spirocyclic compounds vs. flat amido- and heteroaromatics has recently been highlighted in terms of their increased facility towards protein–ligand interactions [12]. Bukhari et al. report on a convenient modified Biginelli protocol for the synthesis of dihydrouracil analogues [13], a crucial intermediate in the metabolic breakdown of uracils [14]. This simplified procedure offers considerable advantages over previously reported multi-step syntheses [15,16]. 2-Aminothiophenes are common drug moieties, with many extant bioactive examples additionally bearing 3-substituents [17,18,19]. Benfodda and co-workers report on the catalyst-free hydroxyalkylation of a 2-amniothiphene via a reaction with trifluoromethyl ketones [20], a remarkable achievement given the propensity of unprotected amines to form imines with carbonyl reagents. Weng et al. developed hypervalent iodine chemistry for the C2-arylacetylation of benzothiazoles via an unusual demethylative reaction of methylaryl ketones [21]. Benzothiazoles are well established as one of the most common ring systems in FDA-approved drugs [22], and 2-arylacyl examples encompass a broad range of bioactivities [23,24,25,26,27,28]. The implementation of enabling technologies, including continuous flow chemistry and electrosynthesis, remains a key area of interest, and Machado and co-workers report on the use of ultrasound-assisted synthesis to facilitate C-O bond forming reactions in the preparation of antitubercular drug candidates [29].
To conclude, synthetic methodology research remains in rude health, with several research groups having contributed a diverse array of novel approaches to synthesising prominent bioactive compounds and key structural moieties.

Acknowledgments

We thank all of the authors for their valuable contributions to this Special Issue; all the peer reviewers for their suggestions, criticism and comments to ensure that the work presented is of high quality; and the Molecules staff members for their support in preparing this issue.

Conflicts of Interest

The author declares no conflict of interest.

References

  1. Xu, J. Synthetic methods of phosphonopeptides. Molecules 2020, 25, 5894. [Google Scholar] [CrossRef] [PubMed]
  2. Chernov, S.V.; Shul’ts, E.E.; Shakirov, M.M.; Tolstikov, G.A. Synthetic transformations of higher terpenoids: XII. Transformation of lambertianic acid into 14, 16-epoxyabietane diterpenoids. Russ. J. Org. Chem. 2006, 42, 36–41. [Google Scholar] [CrossRef]
  3. Shults, E.E.; Velder, J.; Schmalz, H.G.; Chernov, S.V.; Rubalova, T.V.; Gatilov, Y.V.; Henze, G.; Tolstikov, G.A.; Prokop, A. Gram-scale synthesis of pinusolide and evaluation of its antileukemic potential. Bioorganic Med. Chem. Lett. 2006, 16, 4228–4232. [Google Scholar] [CrossRef]
  4. Kharitonov, Y.V.; Shul’ts, E.E.; Rybalova, T.V.; Pavlova, A.V.; Tolstikova, T.G. Synthetic Transformations of Higher Terpenoids. 40. Synthesis and Assessment of Analgesic Activity of N-Containing Derivatives of Lambertianic Acid. Chem. Nat. Compd. 2021, 57, 879–886. [Google Scholar] [CrossRef]
  5. Kharitonov, Y.V.; Shults, E.E. An Approach toward 17-Arylsubstituted Marginatafuran-Type Isospongian Diterpenoids via a Palladium-Catalyzed Heck–Suzuki Cascade Reaction of 16-Bromolambertianic Acid. Molecules 2022, 27, 2643. [Google Scholar] [CrossRef] [PubMed]
  6. Nishizawa, M.; Yamada, H.; Hayashi, Y. Cyclization control of ambliofuran analog: Effective total synthesis of (.+-.)-baiyunol. J. Org. Chem. 1987, 52, 4878–4884. [Google Scholar] [CrossRef]
  7. Pandey, U.C.; Sarmah, P.; Sharma, R.P. Polyene cyclization: Cyclization studies on an acyclic furanoditerpene and its epoxide. Tetrahedron 1984, 40, 3739–3748. [Google Scholar] [CrossRef]
  8. Zhao, J.F.; Zhao, Y.J.; Loh, T.P. Indium tribromide-promoted arene-terminated epoxy olefin cyclization. Chem. Commun. 2008, 11, 1353–1355. [Google Scholar] [CrossRef]
  9. Ruddell, S.; Sugrue, E.; Memarzadeh, S.; Hellam, L.M.; Wilson, S.J.; France, D.J. Synthesis, Enantiomeric Resolution and Biological Evaluation of HIV Capsid Inhibition Activity for Racemic,(S)-and (R)-PF74. Molecules 2021, 26, 3919. [Google Scholar] [CrossRef]
  10. Blair, W.S.; Pickford, C.; Irving, S.L.; Brown, D.G.; Anderson, M.; Bazin, R.; Cao, J.; Ciaramella, G.; Isaacson, J.; Jackson, L.; et al. HIV capsid is a tractable target for small molecule therapeutic intervention. PLoS Pathog. 2010, 6, e1001220. [Google Scholar] [CrossRef] [Green Version]
  11. Zhao, A.X.; Horsfall, L.E.; Hulme, A.N. New methods for the synthesis of spirocyclic cephalosporin analogues. Molecules 2021, 26, 6035. [Google Scholar] [CrossRef]
  12. Zheng, Y.J.; Tice, C.M. The utilization of spirocyclic scaffolds in novel drug discovery. Expert Opin. Drug Discov. 2016, 11, 831–834. [Google Scholar] [CrossRef] [Green Version]
  13. SBukhari, S.N.A.; Ejaz, H.; Elsherif, M.A.; Janković, N. Synthesis and Characterization of Dihydrouracil Analogs Utilizing Biginelli Hybrids. Molecules 2022, 27, 2939. [Google Scholar] [CrossRef] [PubMed]
  14. Inada, M.; Hirao, Y.; Koga, T.; Itose, M.; Kunizaki, J.I.; Shimizu, T.; Sato, H. Relationships among plasma [2-13C] uracil concentrations, breath 13CO2 expiration, and dihydropyrimidine dehydrogenase (DPD) activity in the liver in normal and DPD-deficient dogs. Drug Metab. Dispos. 2005, 33, 381–387. [Google Scholar] [CrossRef] [Green Version]
  15. Wu, S.; Janusz, J.M. Solid-phase synthesis of 3-aminohydantoin, dihydrouracil, thiohydantoin and dihydrothiouracil derivatives. Tetrahedron Lett. 2000, 41, 1165–1169. [Google Scholar] [CrossRef]
  16. Blanco-Ania, D.; Valderas-Cortina, C.; Hermkens, P.H.; Sliedregt, L.A.; Scheeren, H.W.; Rutjes, F.P. Synthesis of dihydrouracils spiro-fused to pyrrolidines: Druglike molecules based on the 2-arylethyl amine scaffold. Molecules 2010, 15, 2269–2301. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  17. Scheich, C.; Puetter, V.; Schade, M. Novel small molecule inhibitors of MDR Mycobacterium tuberculosis by NMR fragment screening of antigen 85C. J. Med. Chem. 2010, 53, 8362–8367. [Google Scholar] [CrossRef]
  18. Narlawar, R.; Lane, J.R.; Doddareddy, M.; Lin, J.; Brussee, J.; IJzerman, A.P. Hybrid ortho/allosteric ligands for the adenosine A1 receptor. J. Med. Chem. 2010, 53, 3028–3037. [Google Scholar] [CrossRef]
  19. Tang, J.; Huber, A.D.; Pineda, D.L.; Boschert, K.N.; Wolf, J.J.; Kankanala, J.; Xie, J.; Sarafianos, S.G.; Wang, Z. 5-Aminothiophene-2, 4-dicarboxamide analogues as hepatitis B virus capsid assembly effectors. Eur. J. Med. Chem. 2019, 164, 179–192. [Google Scholar] [CrossRef]
  20. Duvauchelle, V.; Bénimélis, D.; Meffre, P.; Benfodda, Z. Catalyst-free site selective hydroxyalkylation of 5-phenylthiophen-2-amine with α-trifluoromethyl ketones through electrophilic aromatic substitution. Molecules 2022, 27, 925. [Google Scholar] [CrossRef]
  21. Sun, X.T.; Hu, Z.G.; Huang, Z.; Zhou, L.L.; Weng, J.Q. A Novel PIFA/KOH Promoted Approach to Synthesize C2-arylacylated Benzothiazoles as Potential Drug Scaffolds. Molecules 2022, 27, 726. [Google Scholar] [CrossRef] [PubMed]
  22. Taylor, R.D.; MacCoss, M.; Lawson, A.D. Rings in drugs: Miniperspective. J. Med. Chem. 2014, 57, 5845–5859. [Google Scholar] [CrossRef] [PubMed]
  23. Miralinaghi, P.; Schmitt, C.; Hartmann, R.W.; Frotscher, M.; Engel, M. 6-Hydroxybenzothiophene Ketones: Potent Inhibitors of 17β-Hydroxysteroid Dehydrogenase Type 1 (17β-HSD1) Owing to Favorable Molecule Geometry and Conformational Preorganization. ChemMedChem 2014, 9, 2294–2308. [Google Scholar] [CrossRef]
  24. Komiya, M.; Asano, S.; Koike, N.; Koga, E.; Igarashi, J.; Nakatani, S.; Isobe, Y. Synthesis of novel benzo-fused heteroaryl derivatives as Ca2+/Calmodulin-dependent protein kinase II inhibitors. Chem. Pharm. Bull. 2013, 61, 1094–1097. [Google Scholar] [CrossRef] [Green Version]
  25. Myllymäki, M.J.; Saario, S.M.; Kataja, A.O.; Castillo-Melendez, J.A.; Nevalainen, T.; Juvonen, R.O.; Järvinen, T.; Koskinen, A.M. Design, synthesis, and in vitro evaluation of carbamate derivatives of 2-benzoxazolyl-and 2-benzothiazolyl-(3-hydroxyphenyl)-methanones as novel fatty acid amide hydrolase inhibitors. J. Med. Chem. 2007, 50, 4236–4242. [Google Scholar] [CrossRef] [Green Version]
  26. Tang, G.; Nikolovska-Coleska, Z.; Qiu, S.; Yang, C.Y.; Guo, J.; Wang, S. Acylpyrogallols as inhibitors of antiapoptotic Bcl-2 proteins. J. Med. Chem. 2008, 51, 717–720. [Google Scholar] [CrossRef] [PubMed]
  27. Chen, J.; Li, C.M.; Wang, J.; Ahn, S.; Wang, Z.; Lu, Y.; Dalton, J.T.; Miller, D.D.; Li, W. Synthesis and antiproliferative activity of novel 2-aryl-4-benzoyl-imidazole derivatives targeting tubulin polymerization. Bioorg. Med. Chem. 2011, 19, 4782–4795. [Google Scholar] [CrossRef] [Green Version]
  28. Hu, E.; Kunz, R.K.; Chen, N.; Rumfelt, S.; Siegmund, A.; Andrews, K.; Chmait, S.; Zhao, S.; Davis, C.; Chen, H.; et al. Design, optimization, and biological evaluation of novel keto-benzimidazoles as potent and selective inhibitors of phosphodiesterase 10A (PDE10A). J. Med. Chem. 2013, 56, 8781–8792. [Google Scholar] [CrossRef]
  29. Borsoi, A.F.; Paz, J.D.; Pissinate, K.; Rambo, R.S.; Pestana, V.Z.; Bizarro, C.V.; Basso, L.A.; Machado, P. Ultrasound-Assisted synthesis of 4-alkoxy-2-methylquinolines: An efficient method toward antitubercular drug candidates. Molecules 2021, 26, 1215. [Google Scholar] [CrossRef]
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MDPI and ACS Style

Barker, G.; Rapposelli, S. New Synthetic Methodology for Drug-like Molecules. Molecules 2023, 28, 5632. https://doi.org/10.3390/molecules28155632

AMA Style

Barker G, Rapposelli S. New Synthetic Methodology for Drug-like Molecules. Molecules. 2023; 28(15):5632. https://doi.org/10.3390/molecules28155632

Chicago/Turabian Style

Barker, Graeme, and Simona Rapposelli. 2023. "New Synthetic Methodology for Drug-like Molecules" Molecules 28, no. 15: 5632. https://doi.org/10.3390/molecules28155632

APA Style

Barker, G., & Rapposelli, S. (2023). New Synthetic Methodology for Drug-like Molecules. Molecules, 28(15), 5632. https://doi.org/10.3390/molecules28155632

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