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Review

DNA-Templated Fluorescent Nanoclusters for Metal Ions Detection

by
Chunxia Song
1,
Jingyuan Xu
2,
Ying Chen
1,
Liangliang Zhang
1,
Ying Lu
1 and
Zhihe Qing
2,*
1
Department of Applied Chemistry, School of Science, Anhui Agricultural University, Hefei 230036, China
2
Hunan Provincial Engineering Research Center for Food Processing of Aquatic Biotic Resources, School of Chemistry and Food Engineering, Changsha University of Science and Technology, Changsha 410114, China
*
Author to whom correspondence should be addressed.
Molecules 2019, 24(22), 4189; https://doi.org/10.3390/molecules24224189
Submission received: 13 October 2019 / Revised: 9 November 2019 / Accepted: 13 November 2019 / Published: 19 November 2019
(This article belongs to the Special Issue Determination of Trace Heavy Metals and Metalloids in Environmental Samples)
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Abstract

:
DNA-templated fluorescent nanoclusters (NCs) have attracted increasing research interest on account of their prominent features, such as DNA sequence-dependent fluorescence, easy functionalization, wide availability, water solubility, and excellent biocompatibility. Coupling DNA templates with complementary DNA, aptamers, G-quadruplex, and so on has generated a large number of sensors. Additionally, the preparation and applications of DNA-templated fluorescent NCs in these sensing have been widely studied. This review firstly focuses on the properties of DNA-templated fluorescent NCs, and the synthesis of DNA-templated fluorescent NCs with different metals is then discussed. In the third part, we mainly introduce the applications of DNA-templated fluorescent NCs for sensing metal ions. At last, we further discuss the future perspectives of DNA-templated fluorescent NCs in the synthesis and sensing metal ions in the environmental and biological fields.

1. Introduction

Over the past decade, fluorescent nanoclusters (NCs), especially fluorescent gold nanoclusters (F-AuNCs), fluorescent silver nanoclusters (F-AgNCs), and fluorescent copper nanoclusters (F-CuNCs) have been developed as a very active and attractive research field [1,2,3,4,5,6,7]. Fluorescent NCs are the well-defined sub-nanometer size structures that are formed by a few to a hundred metal atoms with high emission. Current fluorescent materials that are used in sensing applications mostly include organic fluorescent dyes, up-conversion nanomaterials, quantum dots, fluorescent proteins, et al. The easy photobleaching and small Stokes shifts of organic fluorescent dyes restrict their applications in complex samples [8,9]. Most of quantum dots and up-conversion nanomaterials are physically large-size and potentially toxic, which limit their practical applications in biochemical analysis [10,11]. As for fluorescent proteins, they can be easily denatured, which makes them unsuitable for in vitro applications. When compared with these fluorescent materials, few-atom NCs exhibit excellent properties, such as large Stokes shift, high fluorescence, easy functionalization, wide availability, water solubility, and excellent biocompatibility, which make NCs an admirable fluorescent material that is used widely in the sensing field [12,13]. In 2004, it was initiatively reported [14] that fluorescent NCs could be synthesized with DNA as template in aqueous solutions. Subsequently, polymers template, such as proteins [15,16], peptides [17,18], et al. have been successfully applied. This review is focused on DNA-templated fluorescent NCs.
DNA is a kind of well template for fluorescent NCs synthesis and for developing sensors in metal ions detection due to its unique structure, programmable size, and pre-designable architecture when compared with other polymers [19,20]. Firstly, DNA is long-chain polymer that is composed of repeating nucleotide arrangements that are linked to each other by the 3′, 5′-phosphodiester bond. Additionally, each nucleotide consists of one nitrogenated nucleobase, one deoxyribose, and one phosphate. All of the nitrogenated nucleobases and the DNA backbone composed of deoxyriboses/phosphates are negatively charged [9]. Such a unique chemical composition of DNA provides various binding sites for metal ions through electrostatic or coordination interactions under the physiological pH condition. As shown in Figure 1 [5], each nucleotide has a metal-binding site (the N7 atoms of adenine (A) and guanine (G), the N3 atom of cytosine (T), and thymine (C)) [21]. For example, the N3 position of T and C has strong and specific interaction with metal ions Cu2+ and Ag+, respectively [22,23]. Generally, the first step of fluorescent NCs generation is the binding of metal ions onto DNA. Subsequently, these interactions among DNA and metal ions can form various inorganic nanomaterials after a further addition of reducing agents. Thus, the rich chemical functionality of DNA structure make it bind various metal ions and subsequently produce various nanomaterials of interest [21,24]. Secondly, the length of per nucleotide is 0.34 nm, and the DNA structures and nanomaterials both meet at the same size level. Thirdly, the DNA hybridization (via base-pairing of A to T and G to C) can form dsDNA structures, loop/hairpin configurations of ssDNA, and so on for a variety of nanostructures formation. Fourthly, polymerase chain reaction technology can readily synthesize and amplify high quality DNA sequences at a low price through automated methods. Fifthly, the existence of many unique and highly specific enzymes allows for the scientist to mold and manipulate DNA structures [25,26,27]. Finally, DNA aptamers can not only hybridize with complementary nucleic acids, but also selectively bind with a large number of analytes. Hence, the researchers can design DNA sequences that combine molecular recognition and advantages of DNA-templated NCs to develop new sensing strategies [28,29].
Heavy metal ions (copper (II) (Cu2+), mercury (II) (Hg2+), lead (II) (Pb2+), et al.,), present significant hazards to the environment and human health [30,31,32,33,34,35,36], and their pollution is getting increasingly serious due to the increase of industrial emissions, mining, and sewage irrigation in modern society [31,33,36]. Therefore, the sensitive and convenient monitoring of these heavy metal ions with low cost is urgent due to their dose dependent toxic effects. The researchers have developed various methods for metal ions monitoring today [35,36,37,38,39]. Among them, the fluorescent methods are well effective, because they possess some excellent properties, such as high sensitivity, easy preparation, and low cost [31,35,39]. Particularly, DNA-templated fluorescent NCs have been widely applied to analyze a variety of metal ions, including Cu2+, Hg2+, Pb2+, et al. This is a rapidly developing area with increased publications in recent years. A review on DNA-templated fluorescent NCs for metal ions sensing is extremely necessary.
In the first part, this review introduces the features of DNA-templated fluorescent NCs. Secondly, the synthesis of DNA-templated fluorescent NCs has been described. Thirdly, this review mainly introduces the application of DNA-templated fluorescent NCs for metal ions monitoring. Finally, this review trends the future prospects of DNA-templated fluorescent NCs in the synthesis and their sensing applications in environmental and biological fields. DNA-templated fluorescent NCs in this review mainly contain F-AuNCs, F-AgNCs, and F-CuNCs. Overall, we expect that this review will spark more interest in research and boost this active domain, in which DNA-templated fluorescent NCs can bring significant advantages for broader applications.

2. Synthesis of DNA-Templated Fluorescent Nanoclusters

For analysis development, reliable sensors need to produce NCs with stable fluorescence. The fluorescence features of NCs are highly decided by their sizes, templates, solvents, synthetic strategies, et al. [40,41,42,43,44,45]. Fluorescent NCs tend to aggregate due to their high surface energy and small size, so stabilizers or matrices are needed to block NCs. In 2002, the group of Dickson [46] made the initial discovery that dendrimers were used as a template, and later they found that F-AgNCs could be synthesized with C-rich DNA as template (Figure 2A) [14]. That was because Ag+ could specifically coordinate with N3 position of C, which was later used to develop sensors for Ag+ detection [22,23]. This finding firstly connected the fluorescent NCs and DNA. The size of C-rich DNA-templated F-AgNCs is small (2.5 nm hydrodynamic radius) by consisting of several Ag atoms; interestingly, the photophysical properties of F-AgNCs can be tuned by programming different C-rich DNA sequences, which resulted in the variation of emission wavelength from blue (485 nm) to green (520 nm), yellow (572 nm), red (620 nm), and near-IR (705 nm) [47].
In the synthesis of DNA-templated F-AgNCs, C-rich DNA controls the reduced Ag ion (Ag(0)) to be aggregated on the DNA template. The reactions are mostly carried out in neutral pH, where the N3 nitrogen of C does not bear a proton; so, it is very easy for metal binding to occur. However, the N3 position of T bears a proton in neutral pH, so the synthesis of polyT-templated F-AgNCs was only reported at pH 11 [48]. As for A and G nucleosides, the N7 positions are high-affinity binding sites for metal ions, in which other nitrogens on the purine rings can promote metal coordination, so it is difficult to control reduction and form F-AgNCs on them [49,50].
Besides C-rich ssDNA, the researchers have tested a large number of DNA sequences. For example, Shao group [51] studied the impact of basic sites in dsDNA to investigate the effects of DNA-base stacking. They found that, by interacting with the G base, the excited state of DNA-templated F-AgNCs was stabilized [52]. Furthermore, mismatched dsDNA [53] and dsDNA with gaps [54] have been studied for the synthesis of DNA-templated F-AgNCs. Qu group [55] has reported that triplex DNA also supported the formation of DNA-templated F-AgNCs. In addition to the traditional “one DNA-one AgNCs” scheme, multiple DNA strands can also stabilize F-AgNCs [56]. Generally, the DNAs with the length of no less than 12-mer can support the synthesis of F-AgNCs [57]. Interestingly, although the single-C base cannot support the synthesis in water buffer, it can be used to synthesis F-AgNCs in ethanol successfully [58]. Furthermore, G-rich DNA/RNA and G-quadruplex DNA can also be applied as a template to produce F-AgNCs [59,60].
DNA-templated F-AgNCs are highly susceptible to photobleaching, and, in order to alleviate this problem, the scientists sought other suitable metal for fluorescent NCs synthesis. In 2012, the synthesis of DNA-templated F-AuNCs was reported by Shao group (Figure 2B) [7,61]. They used the sequence 5′-GAGGCGCTGCCYCCACCATGAGC-3′ as the template and dimethylamine borane (DMAB) as the reducing agent, and F-AuNCs of 5 nm was obtained at pH 7.0, with excitation and emission bands at 467 and 725 nm, respectively [7,62]. Liu group used 30-mer DNA as template and citrate as reducing agent with blue emitters of F-AuNCs being obtained. A-30 DNA could produce fluorescence at neutral pH (the ratio of A and HAuCl4 was 1:1), while as for the C-30 DNA, low pH was optimally in the case of excess DNA [61]. When NaBH4 was used as reducing agent, only large Au nanoparticles without fluorescence were obtained due to its strong reducing ability. The stoichiometric requirements, reductant, and pH might be related to the coordination between Au and bases, and then affected the formation of F-AuNCs.
The superior properties of DNA-templated F-CuNCs are their simple synthesis, tunable fluorescence, and low-cost when compared to DNA-templated F-AgNCs/F-AuNCs. In 2010, Morhir et al. (Figure 3A) [63] originally discovered that F-CuNCs could be synthesized with dsDNA as template, while ssDNA did not work. Subsequently, it was found by Song et al. [64] and us [65] that the poly(AT-TA) dsDNA sequences could promote the synthesis of F-CuNCs efficiently (Figure 3B). Later, Liu et al. [66] and our group [67] found that F-CuNCs could be selectively synthesized in the presence of polyT-DNA (Figure 3C), while ssDNA with other bases did not work. In 2018, Li et al. [68] efficiently synthesized F-CuNCs with the reticular DNA as template. In general, the main steps for the formation of DNA-templated F-CuNCs include [63,66,67]: (1) Cu(II) is reduced to Cu(I) by reducing agent; (2) Cu(I) is disproportionated to Cu(0); and, (3) the aggregation of Cu(0) on the DNA templates, thus F-CuNCs are produced. Figure 3 shows the schematic illustration and fluorescence signal of various DNA-templated F-CuNCs. It is demonstrated that the fluorescence emission of DNA-templated F-CuNCs is mainly dependent on the length of DNA template. With excitation of 340 nm, DNA-templated CuNCs emit at 600 nm. The size of F-CuNCs is a few nanometers and in proportion to the length of DNA templates.
Thus, the synthesis of DNA-templated fluorescent NCs is very convenient and simple. In a typical process, metal ion (Au+, Ag+ or Cu2+) and DNA are mixed in water or a certain buffer with a certain ratio, to which freshly prepared reducing agent (NaBH4, sodium ascorbate, et al.,) is added. The DNA-templated NCs are usually only obtained for a few minutes or hours, and their emission can be regulated from green to red through the adjustment of DNA sequences and reducing agents.
Due to the extensive research and application of DNA-templated fluorescent NCs, their fluorescence properties have been extensively studied in recent years [1,5,8]. The DNA template shows significant effects on the fluorescence characteristics of NCs. For instance, the dsDNA-templated F-CuNCs show high fluorescence at the range of 587–600 nm [63]. Otherwise, the maximum fluorescence emission of polyT-templated F-CuNCs is about 615 nm [3,4,67]. In addition, the fluorescence characteristics of DNA-templated NCs are also dramatically influenced by the reducing agent. For example, DNA-templated F-AuNCs can exhibit different emission colors due to a different reducing agent [7].

3. DNA-Templated Fluorescent Nanoclusters for Sensing Metal Ions

In recent years, DNA-templated fluorescent NCs have been widely applied in the fields of sensing, bioimaging, therapy, catalysis, and so on [3,4,5,43,44,69]. Additionally, one very important application is metal ions detection (as summarized in Table 1) [35,39]. In general, the mechanism of DNA-templated fluorescent NCs based metal ions detection can be classified into three modes: fluorescence turn-on, ratiometric fluorescence, and fluorescence turn-off. Most of the turn-off systems are based on the fact that the fluorescence of DNA-templated NCs is susceptible to the detection medium. Otherwise, fluorescence turn-on/ratiometric systems are more sensitive. Therefore, we will focus on the application of DNA-templated fluorescent NCs in different modes for metal ions sensing.

3.1. Copper Ions

As an essential trace element, copper is distributed widely in tissues and a component of hemocyanin in the human body [70,71], but excessive exposure to Cu2+ can interfere with cellular metabolism and lead to some neurodegenerative diseases, for example Wilson disease, Alzheimer′ Silent disease, amyotrophic lateral sclerosis, and Menkes syndrome [72]. In metal ions, the toxicity of Cu2+ is slightly less than Hg2+ in drinking water. Based on the discovery that the introduction of Cu2+ to the system of DNA-templated F-AgNCs could form DNA-templated Cu/Ag alloy NCs with the emission of the F-AgNCs to be −4.5-fold enhanced, a sensitive turn-on detection probe was developed by Chang group [73] for Cu2+ sensing (the detection limit (LOD): 10 nM). The fluorescence intensity of this probe increased along with the increasing concentration of Cu2+, and the practical application for Cu2+ measurement was verified in pond water and Montana soil. Not long after, based on the discovery that the fluorescence of DNA-templated F-Cu/AgNCs could be quenched by mercaptopropionic acid, and the introduction of Cu2+ could recover the fluorescence; Chang group (Figure 4) [74] has developed another sensitive method for Cu2+ sensing (LOD: 2.7 nM), and this method showed high specificity as the target signal was at its lowest 2300 times over other metal ions. In addition, the practical application of this method was proven through the pond water and Montana soil analyses. In 2011, Ye group [75] synthesized F-AgNCs by utilizing a C-rich ssDNA with the sequence 5′-ATCCTCCCACCGGGCCTCCCACCATAAAAACCCTTAATCCCC-3′ as the template. Interestingly, they found that Cu2+ could efficiently quench the fluorescence of F-AgNCs. Even though the mechanism of quenching was not very clear, they developed a turn-off Cu2+ detection method (LOD: 10 nM).
After our group [66] found that polyT-DNA could be selectively used as template to synthesize DNA-templated F-CuNCs, we [30] have constructed a turn-on and portable sensor for Cu2+ detection by utilizing microwell-printed hydrogel that was functionalized by polyT-DNA. Cu2+ could induce the in-situ formation of F-CuNCs in the hydrogel and this phenomenon could be directly observed by the naked eye under ultraviolet light. Based on the fluorescence intensity, the Cu2+ concentration has been determined (LOD:20 μM). Attractively, a portable microarray could be obtained by printing on the hydrogel with simply equipped instruments and used in certain remote areas. Later, in view of the in-situ synthesis of polyT-templated F-CuNCs, our group (Figure 5) [31] constructed an ultrafast fluorescent method for zero-background Cu2+ sensing and screening of its toxicides. The concentration of Cu2+ in the contaminated water was proportional to the fluorescence intensity of the polyT-templated F-CuNCs, which could be simply detected by measuring fluorescence emission. Most importantly, the production of the fluorescent signal was very fast (in just 1 min.), with high selectivity being attributed to the in situ formation. The practical use of this method has been proven by detecting Cu2+ from contaminated river/tap water samples, and showed good performance. Moreover, by directly analyzing the influence of different molecules on Cu2+, the use of this method in the screening of Cu2+ toxicides was verified, which showed great potential in medical therapy and the treatment of Cu2+-based sewage.

3.2. Mercury Ions

As the most common toxic heavy metal ions existed in the environment, the accumulation of Hg2+ in the human body can bring about severe damage to the immune, endocrine, and nervous system, as Hg2+ can accumulate in the body and be easily absorbed by the skin as well as the respiratory and digestive tract. Furthermore, Hg2+ can bind to DNA due to the high affinity and damage nervous/brain system [32,35,36]. Wang group [76] have found that the introduction of Hg2+ to the DNA-templated F-AgNCs could form a non-fluorescent complex between Hg2+ and DNA-templated F-AgNCs, resulting in the impairing of the interaction between the F-AgNCs and DNA template with fluorescence quenched. By utilizing this discovery, they reported a sensitive turn-off Hg2+ detection method (LOD: 5 nM) with high selectivity. The linear Stern-Volmer plot and unchanged lifetime of fluorescence indicated that static quenching was the mechanism of this Hg2+ induced quenching. Lan et al. [77] reported another turn-off Hg2+ detection method (LOD: 0.9 nM), in which the DNA-templated F-AgNCs was prepared by using a molecular beacon (5′-CCCTTCCTTCCTTCCAACCAACCC-3′) and the quantum yield of this DNA-templated F-AgNCs probe (at 608 nm) was as high as 61% with high stability towards exonuclease I-, thiols -, and Cl-. Deng et al. (Figure 6A) [78] developed a turn-on method for Hg2+ sensing that was based on the fact that Hg2+ could stabilize T-T mismatch. In this case, the DNA duplexes as capping scaffolds (hybridized by one ssDNA with C-loop inside and another DNA) had some T-T base mismatches on the loop. T-T formation that was mediated by Hg2+ could strength the DNA duplexes, resulting in the high yield of DNA-templated F-AgNCs, thus a turn-on strategy for Hg2+ sensing has been created (LOD: 10 nM in water). In 2013, Yin et al. [79] designed another turn-on Hg2+ fluorescence sensor (LOD was 0.08 nM) that utilized T-Hg2+-T complexes and DNA molecular machine-based F-AgNCs. Hg2+ could trigger machine-like operations of DNA with a mass of DNA produced, and the “product” DNA could be used to stabilize F-AgNCs. In 2013, Liu et al. (Figure 6B) [80] proposed a ratiometric and visual Hg2+ sensor that was based on dual emissive DNA-templated F-AgNCs with a LOD of 4 nM. The introduction of Ag+ to a C-rich ssDNA could stabilize the C-Ag+-C base pair [81] and one hairpin structure formed. Additionally, the gained hairpin DNA was employed for the synthesis of orange emission F-AgNCs. Interestingly, in the presence of Hg2+, the emission was changed to green. By just varying the DNA structure, a ratiometric method for sensitive Hg2+ sensing was achieved. In addition, they successfully immobilized this sensor in a monolithic hydrogel matrix for easy manipulation and device incorporation.
Based on dsDNA-templated F-CuNCs and T-T formation that mediated by Hg2+, our group (Figure 7A) [42] have proposed a facile strategy for Hg2+ sensing. The introduction of Hg2+ could promote the hybridization of the primer and template DNA, resulting in the primer-extension reaction and the produced dsDNA could be used for the formation of F-CuNCs. This turn-on method showed good selectivity in Hg2+ detection and has been applied in nucleic acid and polymerase detection. Based on polyT-templated F-CuNCs, Wang et al. [82] developed another turn-on strategy for Hg2+ sensing. This label-free strategy has been used to detect Hg2+ on the basis that Hg2+ could block the cysteine induced quenching of polyT-templated F-CuNCs. The fluorescent probe (T30-DNA templated F-CuNCs) could be produced within 5 min. Cysteine could form the coordination complex with Cu in the T30-templated F-CuNCs through the Cu-S metal-ligand bond and then effectively quenched the fluorescence. However, on account of the strong binding between cysteine and Hg2+, the introduction of Hg2+ could form a more stable Hg-S bond, which made cysteine depart from T30-templated F-CuNCs with recovered fluorescence. This strategy achieved good sensitivity (LOD: 0.1 nM) and excellent selectivity. Moreover, the practical detection of Hg2+ has been successfully achieved in the lake water samples. In 2018, Li et al. (Figure 7B) [68] developed a high signal-to-noise ratio Hg2+ strategy that was based on reticular DNA-templated F-CuNCs. The introduction of Hg2+ to the polyT-DNA could form T-Hg2+-T nodes, and rigid reticular DNA was formed in the end, which could be used to synthesize F-CuNCs with enhanced fluorescence. The excessive polyT-DNA was digested by exonuclease I, with reduced background and high signal-to-noise ratio being gained.

3.3. Lead Ions

Pb2+ is a serious toxic heavy metal ion that is widely distributed in drinking water. High level of Pb2+ can cause serious damage to human body, including impaired growth, decreased intelligence, irritability muscle paralysis, and kidney disease [35,36,83,84]. The Zeng group (Figure 8A) [85] has discovered that Pb2+ could selectively quench the fluorescence of dsDNA-templated F-CuNCs, owing to the metallophilic interactions at the surface of F-CuNCs through 5d10(Pb2+)–3d10(Cu2+) reaction. Based on this fact, a turn-off method has been achieved with good sensitivity (LOD: 5 nM), and the practical application of this method has been verified for Pb2+ detection in river water and human urine samples. By a similar mechanism, another turn-off strategy (Figure 8B) [86] that based on polyT-templated F-CuNCs was proven to effectively detect Pb2+ with high sensitivity (the LOD was 0.4 nM) and good selectivity. Besides, the practical assay of Pb2+ has been successfully achieved for the tap water samples.

3.4. Other Ions

Manganese (Mn) is one of the essential trace elements in the human body, which constitutes several important physiologically active enzymes in the body [87,88]. Mn2+ deficiency can lead to hypercholesterolaemia and delay blood coagulation. However, excessive intake of Mn2+ might cause adverse neurological effects and manganism [89]. Interestingly, in 2013, Han et al. (Figure 8C) [90] found that besides poly-T DNAs, single-T base could also be used as the template for the formation of F-CuNCs (the maximum excitation wavelength: 354 nm; fluorescence emission peaks: 561 nm), and the introduction of Mn2+ could make the emission red shifted. Based on these facts, a turn-on fluorescent method for Mn2+ monitoring has been established with a high sensitivity (LOD: 10 μM) and good selectivity.

4. Future Prospects

The applications of DNA-templated fluorescent NCs in sensing metal ions have been summarized in this review. In recent years, the robustness and versatility of DNA-templated fluorescent NCs have made them promising candidates for detecting various metal ions. It was shown that there are some convincing features of the DNA-templated fluorescent NCs: (1) Excellent characteristics of fluorescence: the large MegaStokes shift of the DNA-templated fluorescent NCs makes them potentially useful in complex matrices of actual samples; (2) Label-free: there is no need for labeling, without complex synthesis and operation procedures; (3) Rapid: the interaction between target and DNA templates or NCs is the basis of most metal ions detection, which is rapid and finished in a few minutes; (4) Environmental-benign: as compared with quantum dots and other nanomaterials, DNA-templated NCs are less bio-toxic; and, (5) Sensitive and versatile: by associating the DNA signal amplification with target-recognition capability [27], the DNA-templated fluorescent NCs-based assays are easily and simply designed to obtain high sensitivity and versatility.
Here, we also discuss personal views from the authors regarding a few future improvements and novel applications: (1) The basic mechanism study: it is necessary to systematically establish the relationship between the emission of the DNA-templated fluorescent NCs and their sequences of DNA templates. The research needs to screen a great many of DNAs with various length and sequences. Besides, it is urgent to understand the structure of the DNA-NCs complex in order to design the DNA sequences rationally with a highly successful rate; (2) Long-term photostability: DNA-templated fluorescent NCs are usually unstable and the fluorescence is continuously reduced since formation. More stable DNA-templated fluorescent NCs should be achieved through the rational design of the DNA sequence and length, and the experimental conditions need to be carefully controlled; and, (3) Novel analytical strategies: application and exploration of novel analytical strategies may exhibit great prominence. Some attempts, such as electrochemical assay [92,93], plasma mass spectrometer (ICP-MS) assay [94], surface plasmon resonance (SPR) assay [95], chemiluminescent assay [96,97], electrochemiluminescent assay [98,99], real-time/on-site colorimetric assay [100,101], surface-enhanced Raman scattering (SERS) assay [102], et al. have brought interesting effects. In summary, as shown in this review, the metal ions assay based on DNA-templated fluorescent NCs has opened a new way and might hold great practical potential for sensing in environmental and biological fields.

Author Contributions

Conceptualization, resources and writing—Original draft preparation, C.S., J.X., Y.C. and L.Z.; supervision and writing—Review and editing, Y.L. and Z.Q.

Funding

This research was funded in part by the National Natural Science Foundation of China (21705002), the Natural Science Foundation of Hunan Province (2019JJ30025) and Hunan Graduate Research and Innovation Project (CX2018B569).

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. The main DNA nucleoside metal binding sites. Reprinted with permission from Ref. [5]. ©2014 American Chemical Society.
Figure 1. The main DNA nucleoside metal binding sites. Reprinted with permission from Ref. [5]. ©2014 American Chemical Society.
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Figure 2. Schematic illustration of (A) DNA-templated AgNCs. Reprinted with permission from Ref. [14]. T Copyright 2004, American Chemical Society. (B) DNA-templated AuNCs. Reprinted with permission from Ref. [7]. Copyright 2012, Springer.
Figure 2. Schematic illustration of (A) DNA-templated AgNCs. Reprinted with permission from Ref. [14]. T Copyright 2004, American Chemical Society. (B) DNA-templated AuNCs. Reprinted with permission from Ref. [7]. Copyright 2012, Springer.
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Figure 3. Schematic illustration of fluorescent CuNCs templated by various DNA: (A) dsDNA. Reprinted with permission from Ref. [63]. Copyright 2010, Wiley-VCH. (B) poly(AT-TA) dsDNA. The green dsDNA is the poly (AT-TA) sequence, while the blue dsDNA represents other sequences. Reprinted with permission from Ref. [65]. Copyright 2014, Royal Society of Chemistry. (C) polyT-DNA. The blue ssDNA is the polyT sequence, while the green ssDNA represents other sequences. Reprinted with permission from Ref. [67]. Copyright 2013, Wiley-VCH. In each case, the fluorescence intensity is proportional to the length of the template.
Figure 3. Schematic illustration of fluorescent CuNCs templated by various DNA: (A) dsDNA. Reprinted with permission from Ref. [63]. Copyright 2010, Wiley-VCH. (B) poly(AT-TA) dsDNA. The green dsDNA is the poly (AT-TA) sequence, while the blue dsDNA represents other sequences. Reprinted with permission from Ref. [65]. Copyright 2014, Royal Society of Chemistry. (C) polyT-DNA. The blue ssDNA is the polyT sequence, while the green ssDNA represents other sequences. Reprinted with permission from Ref. [67]. Copyright 2013, Wiley-VCH. In each case, the fluorescence intensity is proportional to the length of the template.
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Figure 4. Schematic representation of turn-on Cu2+ sensing strategy that based on Cu2+ induced fluorescence recovery of DNA-templated F-Cu/AgNCs. Reprinted with permission from Ref. [74]. Copyright 2010, American Chemical Society.
Figure 4. Schematic representation of turn-on Cu2+ sensing strategy that based on Cu2+ induced fluorescence recovery of DNA-templated F-Cu/AgNCs. Reprinted with permission from Ref. [74]. Copyright 2010, American Chemical Society.
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Figure 5. Schematic diagram of zero-background Cu2+ sensing/toxicides screening based on polyT-templated fluorescent copper nanoclusters (F-CuNCs) and excitation/emission spectra of polyT-templated F-CuNCs. Reprinted with permission from Ref. [31]. Copyright 2016, Elsevier B.V.
Figure 5. Schematic diagram of zero-background Cu2+ sensing/toxicides screening based on polyT-templated fluorescent copper nanoclusters (F-CuNCs) and excitation/emission spectra of polyT-templated F-CuNCs. Reprinted with permission from Ref. [31]. Copyright 2016, Elsevier B.V.
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Figure 6. Schematic representation for (A) A turn-on Hg2+ sensor that based on DNA-templated F-AgNCs. Reprinted with permission from Ref. [78]. Copyright 2011, Royal Society of Chemistry. (B) A ratiometric Hg2+ sensor that based on dual emissive DNA-templated F-AgNCs. Reprinted with permission from Ref. [80]. Copyright 2013, Elsevier B.V.
Figure 6. Schematic representation for (A) A turn-on Hg2+ sensor that based on DNA-templated F-AgNCs. Reprinted with permission from Ref. [78]. Copyright 2011, Royal Society of Chemistry. (B) A ratiometric Hg2+ sensor that based on dual emissive DNA-templated F-AgNCs. Reprinted with permission from Ref. [80]. Copyright 2013, Elsevier B.V.
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Figure 7. Schematic representation for (A) A turn-on strategy for polymerization-mediated Hg2+ detection based on dsDNA-templated F-CuNCs. Reprinted with permission from Ref. [42]. Copyright 2014, Royal Society of Chemistry; (B) A high signal-to-noise ratio strategy for Hg2+ sensing that based on rigid reticular DNA templated F-CuNCs. Vc is the abbreviation of ascorbate, and Exo I is the abbreviation of exonuclease I. Reprinted with permission from Ref. [68]. Copyright 2018, American Chemical Society.
Figure 7. Schematic representation for (A) A turn-on strategy for polymerization-mediated Hg2+ detection based on dsDNA-templated F-CuNCs. Reprinted with permission from Ref. [42]. Copyright 2014, Royal Society of Chemistry; (B) A high signal-to-noise ratio strategy for Hg2+ sensing that based on rigid reticular DNA templated F-CuNCs. Vc is the abbreviation of ascorbate, and Exo I is the abbreviation of exonuclease I. Reprinted with permission from Ref. [68]. Copyright 2018, American Chemical Society.
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Figure 8. Schematic representation for (A) Turn-off sensing of Hg2+ based on dsDNA-templated F-CuNCs. Reprinted with permission from Ref. [85]. Copyright 2012, Royal Society of Chemistry; (B) PolyT-templated F-CuNCs based turn-off sensing of Hg2+. Reprinted with permission from Ref. [86]. Copyright 2014, Japan Society for Analytical Chemistry; (C) Turn-off detection of Mn2+ using single T-templated F-CuNCs. Reprinted with permission from Ref. [90]. Copyright 2017, Royal Society of Chemistry.
Figure 8. Schematic representation for (A) Turn-off sensing of Hg2+ based on dsDNA-templated F-CuNCs. Reprinted with permission from Ref. [85]. Copyright 2012, Royal Society of Chemistry; (B) PolyT-templated F-CuNCs based turn-off sensing of Hg2+. Reprinted with permission from Ref. [86]. Copyright 2014, Japan Society for Analytical Chemistry; (C) Turn-off detection of Mn2+ using single T-templated F-CuNCs. Reprinted with permission from Ref. [90]. Copyright 2017, Royal Society of Chemistry.
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Table
Table 1. Summary of DNA-templated nanoclusters that used for metal ions detection [30,31,42,62,68,73,74,75,76,77,78,80,82,85,86,90,91].
Table 1. Summary of DNA-templated nanoclusters that used for metal ions detection [30,31,42,62,68,73,74,75,76,77,78,80,82,85,86,90,91].
Nanomaterial UsedAnalytesStrategyLODLinear Range (nM)Ref.
PolyT-templated F-CuNCsCu2+Turn-on20 µM20 µM–10 mM[30]
PolyT-templated F-CuNCsCu2+Turn-on5.6 μM15–35 µM[31]
DNA-templated F-AgNCsCu2+Turn-on8 nM25–250 nM[73]
DNA-templated F-AgNCsCu2+Turn-on2.7 nM5–200 nM[74]
DNA-templated F-AgNCs Cu2+Turn-off10 nM10–1000 nM[75]
dsDNA-templated F-CuNCsHg2+Turn-on--[42]
PolyT-templated F-CuNCsHg2+Turn-on--[62]
PolyT-templated F-CuNCsHg2+Turn-on16 pM50 pM–500 μM[68]
DNA-templated F-AgNCsHg2+Turn-off5 nM5–1500 nM[76]
DNA-templated F-AgNCsHg2+Turn-off0.9 nM2.5–50 nM[77]
DNA-templated F-AgNCsHg2+Turn-on10 nM10–300 nM[78]
DNA-templated F-AgNCsHg2+Turn-off4 nM10–200 nM[80]
PolyT-templated F-CuNCsHg2+Turn-on0.1 nM0.5–30 nM[82]
DNA-templated F-AgNCsHg2+Turn-on0.033 nM0.1–200 nM[91]
dsDNA-templated F-CuNCsPb2+Turn-off5 nM,5–100 nM[85]
PolyT-templated F-CuNCsPb2+Turn-off0.4 nM1.0–500 nM[86]
SingleT-templated F-CuNCsMn2+Turn-on10 μM.100–250 μM[90]

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Song, C.; Xu, J.; Chen, Y.; Zhang, L.; Lu, Y.; Qing, Z. DNA-Templated Fluorescent Nanoclusters for Metal Ions Detection. Molecules 2019, 24, 4189. https://doi.org/10.3390/molecules24224189

AMA Style

Song C, Xu J, Chen Y, Zhang L, Lu Y, Qing Z. DNA-Templated Fluorescent Nanoclusters for Metal Ions Detection. Molecules. 2019; 24(22):4189. https://doi.org/10.3390/molecules24224189

Chicago/Turabian Style

Song, Chunxia, Jingyuan Xu, Ying Chen, Liangliang Zhang, Ying Lu, and Zhihe Qing. 2019. "DNA-Templated Fluorescent Nanoclusters for Metal Ions Detection" Molecules 24, no. 22: 4189. https://doi.org/10.3390/molecules24224189

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