Information-Theoretic and Conceptual Density Functional Theory Insights on Frustration in Molecular Clusters
Abstract
1. Introduction
2. Theoretical Framework
3. Computational Details
4. Results and Discussion
4.1. Frustrativity Profiles from Total Energies
4.2. Energy-Decomposition Analysis: Origins of Energetic Frustration
4.3. Frustration from CDFT Descriptors
4.4. ITA Descriptors of Frustration
4.5. Overall Perspective and Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
- Novikov, A.S. Theoretical Investigation on Non-Covalent Interactions. Crystals 2022, 12, 167. [Google Scholar] [CrossRef]
- Gibb, B.; Gale, P. Supramolecular chemistry: Defined. Supramol. Chem. 2017, 29, 633. [Google Scholar] [CrossRef]
- Kak, S. Optimal representation in biological systems. Theory Biosci. 2025, 144, 237–242. [Google Scholar] [CrossRef]
- Chen, R.; Wang, Y.; Wu, H.; Hu, W. The collective power of weak van der Waals forces. Chem 2025, 11, 102620. [Google Scholar] [CrossRef]
- MacDowell, L.G. Surface van der Waals forces in a nutshell. J. Chem. Phys. 2019, 150, 081101. [Google Scholar] [CrossRef] [PubMed]
- Ding, Z.; Liu, W.; Li, S.; Zhang, D.; Zhao, Y.; Lavernia, E.J.; Zhu, Y. Contribution of van der Waals forces to the plasticity of magnesium. Acta Mater. 2016, 107, 127–132. [Google Scholar] [CrossRef]
- Fernández, A. Stickiness of the Hydrogen Bond. Ann. Phys. 2018, 530, 1800162. [Google Scholar] [CrossRef]
- Matsumoto, A. Bond energies and hydrogen density distributions for hydrogen bond. Z. Naturforschung A 2023, 78, 309–314. [Google Scholar] [CrossRef]
- Berquez, L.; Notingher, P. Editorial: Electrostatics. IEEE Trans. Dielectr. Electr. Insul. 2016, 23, 613. [Google Scholar] [CrossRef]
- Neel, A.J.; Hilton, M.J.; Sigman, M.S.; Toste, F.D. Exploiting non-covalent π interactions for catalyst design. Nature 2017, 543, 637–646. [Google Scholar] [CrossRef]
- Kubasov, A.S.; Avdeeva, V.V. Non-Covalent Interactions in Coordination Chemistry. Inorganics 2024, 12, 79. [Google Scholar] [CrossRef]
- Zhou, T.; Liu, S.; Yu, D.; Zhao, D.; Rong, C.; Liu, S. On the negative cooperativity of argon clusters containing one lithium cation or fluorine anion. Chem. Phys. Lett. 2019, 716, 192–198. [Google Scholar] [CrossRef]
- Liu, S. Homochirality Originates from the Handedness of Helices. J. Phys. Chem. Lett. 2020, 11, 8690–8696. [Google Scholar] [CrossRef]
- Hunter, C.A.; Anderson, H.L. What is Cooperativity? Angew. Chem. Int. Ed. 2009, 48, 7488–7499. [Google Scholar] [CrossRef]
- Gianni, S.; Freiberger, M.I.; Jemth, P.; Ferreiro, D.U.; Wolynes, P.G.; Fuxreiter, M. Fuzziness and Frustration in the Energy Landscape of Protein Folding, Function, and Assembly. Acc. Chem. Res. 2021, 54, 1251–1259. [Google Scholar] [CrossRef] [PubMed]
- Liu, S.; Rong, C. Quantifying Frustrations for Molecular Complexes with Noncovalent Interactions. J. Phys. Chem. A 2021, 125, 4910–4917. [Google Scholar] [CrossRef]
- Rong, C.; Zhao, D.; He, X.; Liu, S. Development and Applications of the Density-Based Theory of Chemical Reactivity. J. Phys. Chem. Lett. 2022, 13, 11191–11200. [Google Scholar] [CrossRef] [PubMed]
- Nagaraja, C.M.; Maji, T.K.; Rao, C.N.R. Synthesis and structures of CoII, NiII, and CuII coordination frameworks formed by a flexible 1,3-phenylenediacetic acid ligand. J. Mol. Struct. 2010, 976, 168–173. [Google Scholar] [CrossRef]
- Wu, Y.; Zhao, Y. A Theoretical Study on the Origin of Cooperativity in the Formation of 310-and α-Helices. J. Am. Chem. Soc. 2001, 123, 5313–5319. [Google Scholar] [CrossRef]
- Guevara-Vela, J.M.; Romero-Montalvo, E.; Mora Gómez, V.A.; Chávez-Calvillo, R.; García-Revilla, M.; Francisco, E.; Pendás, Á.M.; Rocha-Rinza, T. Hydrogen bond cooperativity and anticooperativity within the water hexamer. Phys. Chem. Chem. Phys. 2016, 18, 19557–19566. [Google Scholar] [CrossRef]
- Rong, C.; Zhao, D.; Zhou, T.; Liu, S.; Yu, D.; Liu, S. Homogeneous Molecular Systems are Positively Cooperative, but Charged Molecular Systems are Negatively Cooperative. J. Phys. Chem. Lett. 2019, 10, 1716–1721. [Google Scholar] [CrossRef] [PubMed]
- Rong, C.; Zhao, D.; Yu, D.; Liu, S. Quantification and origin of cooperativity: Insights from density functional reactivity theory. Phys. Chem. Chem. Phys. 2018, 20, 17990–17998. [Google Scholar] [CrossRef] [PubMed]
- Liu, S. Steric effect: A quantitative description from density functional theory. J. Chem. Phys. 2007, 126, 244103. [Google Scholar] [CrossRef]
- Nalewajski, R.F. On phase/current components of entropy/information descriptors of molecular states. Mol. Phys. 2014, 112, 2587–2601. [Google Scholar] [CrossRef]
- Nalewajski, R.F. Information-Theoretic Descriptors of Molecular States and Electronic Communications between Reactants. Entropy 2020, 22, 749. [Google Scholar] [CrossRef]
- He, X.; Li, M.; Rong, C.; Zhao, D.; Liu, W.; Ayers, P.W.; Liu, S. Some Recent Advances in Density-Based Reactivity Theory. J. Phys. Chem. A 2024, 128, 1183–1196. [Google Scholar] [CrossRef] [PubMed]
- Cover, T.M.; Thomas, J.A. Elements of Information Theory, 2nd ed.; John Wiley & Sons: New York, NY, USA, 2005. [Google Scholar] [CrossRef]
- Nalewajski, R.F. Information principles in the theory of electronic structure. Chem. Phys. Lett. 2003, 372, 28–34. [Google Scholar] [CrossRef]
- Kluber, A.; Burt, T.A.; Clementi, C. Size and topology modulate the effects of frustration in protein folding. Proc. Natl. Acad. Sci. USA 2018, 115, 9234–9239. [Google Scholar] [CrossRef]
- Wesolowski, T.A.; Wang, Y.A. Recent Progress in Orbital-Free Density Functional Theory; World Scientific: Singapore, 2013. [Google Scholar] [CrossRef]
- Xiao, X.; Cao, X.; Zhao, D.; Rong, C.; Liu, S. Quantification of Molecular Basicity for Amines: A Combined Conceptual Density Functional Theory and Information-Theoretic Approach Study. Acta Phys.-Chim. Sin. 2020, 36, 1906034. [Google Scholar] [CrossRef]
- Levine, R.D. Information Theory Approach to Molecular Reaction Dynamics. Annu. Rev. Phys. Chem. 1978, 29, 59–92. [Google Scholar] [CrossRef]
- Cavaliere, A.G.; Pelissetto, A. Disordered Ising model with correlated frustration. J. Phys. Math. Theor. 2019, 52, 174002. [Google Scholar] [CrossRef]
- Röder, K.; Wales, D.J. Evolved Minimal Frustration in Multifunctional Biomolecules. J. Phys. Chem. B 2018, 122, 10989–10995. [Google Scholar] [CrossRef] [PubMed]
- McKay, S.R.; Berker, A.N.; Kirkpatrick, S. Spin-Glass Behavior in Frustrated Ising Models with Chaotic Renormalization-Group Trajectories. Phys. Rev. Lett. 1982, 48, 767–770. [Google Scholar] [CrossRef]
- Dunn, P.L.; Cook, B.J.; Johnson, S.I.; Appel, A.M.; Bullock, R.M. Oxidation of Ammonia with Molecular Complexes. J. Am. Chem. Soc. 2020, 142, 17845–17858. [Google Scholar] [CrossRef]
- Kitaura, K.; Morokuma, K. A new energy decomposition scheme for molecular interactions within the Hartree-Fock approximation. Int. J. Quantum Chem. 1976, 10, 325–340. [Google Scholar] [CrossRef]
- Wu, Q.; Ayers, P.W.; Zhang, Y. Density-based energy decomposition analysis for intermolecular interactions with variationally determined intermediate state energies. J. Chem. Phys. 2009, 131, 164112. [Google Scholar] [CrossRef]
- Jeziorski, B.; Moszynski, R.; Szalewicz, K. Perturbation Theory Approach to Intermolecular Potential Energy Surfaces of van der Waals Complexes. Chem. Rev. 1994, 94, 1887–1930. [Google Scholar] [CrossRef]
- Horn, P.R.; Mao, Y.; Head-Gordon, M. Probing non-covalent interactions with a second generation energy decomposition analysis using absolutely localized molecular orbitals. Phys. Chem. Chem. Phys. 2016, 18, 23067–23079. [Google Scholar] [CrossRef]
- Geerlings, P.; De Proft, F.; Langenaeker, W. Conceptual Density Functional Theory. Chem. Rev. 2003, 103, 1793–1874. [Google Scholar] [CrossRef]
- Chermette, H. Chemical reactivity indexes in density functional theory. J. Comput. Chem. 1999, 20, 129–154. [Google Scholar] [CrossRef]
- Liu, S. Conceptual Density Functional Theory and Some Recent Developments. Acta Phys.-Chim. Sin. 2009, 25, 590–600. [Google Scholar] [CrossRef]
- Espinosa Leal, L.A.; Karpenko, A.; Caro, M.A.; Lopez-Acevedo, O. Optimizing a parametrized Thomas–Fermi–Dirac–Weizsäcker density functional for atoms. Phys. Chem. Chem. Phys. 2015, 17, 31463–31471. [Google Scholar] [CrossRef]
- Weizsäcker, C.F.V. Zur Theorie der Kernmassen. Z. Phys. 1935, 96, 431–458. [Google Scholar] [CrossRef]
- De Proft, F.; Liu, S.; Parr, R.G. Chemical potential, hardness, hardness and softness kernel and local hardness in the isomorphic ensemble of density functional theory. J. Chem. Phys. 1997, 107, 3000–3006. [Google Scholar] [CrossRef]
- Berkowitz, M.; Parr, R.G. Molecular hardness and softness, local hardness and softness, hardness and softness kernels, and relations among these quantities. J. Chem. Phys. 1988, 88, 2554–2557. [Google Scholar] [CrossRef]
- Parr, R.G.; Szentpály, L.V.; Liu, S. Electrophilicity Index. J. Am. Chem. Soc. 1999, 121, 1922–1924. [Google Scholar] [CrossRef]
- Chattaraj, P.K.; Sarkar, U.; Roy, D.R. Electrophilicity Index. Chem. Rev. 2006, 106, 2065–2091. [Google Scholar] [CrossRef]
- Parthasarathi, R.; Padmanabhan, J.; Elango, M.; Chitra, K.; Subramanian, V.; Chattaraj, P.K. p Ka Prediction Using Group Philicity. J. Phys. Chem. A 2006, 110, 6540–6544. [Google Scholar] [CrossRef] [PubMed]
- Shannon, C.E. A Mathematical Theory of Communication. Bell Syst. Tech. J. 1948, 27, 379–423. [Google Scholar] [CrossRef]
- Zhao, Y.L.; Zhao, D.B.; Rong, C.Y.; Liu, S.; Ayers, P.W. Extending the information-theoretic approach from the (one) electron density to the pair density. J. Chem. Phys. 2025, 162, 244108. [Google Scholar] [CrossRef]
- Zhao, Y.; Zhao, D.; Rong, C.; Liu, S.; Ayers, P.W. Information theory meets quantum chemistry: A review and perspective. Entropy 2025, 27, 644. [Google Scholar] [CrossRef] [PubMed]
- Nagy, Á. Fisher information and density functional theory. Int. J. Quantum Chem. 2022, 122, e26679. [Google Scholar] [CrossRef]
- Ludeña, E.V.; Torres, F.J.; Becerra, M.; Rincón, L.; Liu, S. Shannon Entropy and Fisher Information from a Non-Born–Oppenheimer Perspective. J. Phys. Chem. A 2020, 124, 386–394. [Google Scholar] [CrossRef]
- Liu, S. On the relationship between densities of Shannon entropy and Fisher information for atoms and molecules. J. Chem. Phys. 2007, 126, 191107. [Google Scholar] [CrossRef]
- Rong, C.; Liu, S.; Chattaraj, P.; Lu, T. On the relationship among Ghosh-Berkowitz-Parr entropy, Shannon entropy and Fisher information. Indian J. Chem.-Sect. A 2014, 53A, 970–977. [Google Scholar] [CrossRef]
- Ghosh, S.K.; Berkowitz, M.; Parr, R.G. Transcription of ground-state density-functional theory into a local thermodynamics. Proc. Natl. Acad. Sci. USA 1984, 81, 8028–8031. [Google Scholar] [CrossRef]
- Liu, S.; Rong, C.; Wu, Z.; Lu, T. Rényi Entropy, Tsallis Entropy and Onicescu Information Energy in Density Functional Reactivity Theory. Acta Phys.-Chim. Sin. 2015, 31, 2057–2063. [Google Scholar] [CrossRef]
- Nalewajski, R.F.; Parr, R.G. Information theory, atoms in molecules, and molecular similarity. Proc. Natl. Acad. Sci. USA 2000, 97, 8879–8882. [Google Scholar] [CrossRef]
- Verstraelen, T.; Vandenbrande, S.; Heidar-Zadeh, F.; Vanduyfhuys, L.; Van Speybroeck, V.; Waroquier, M.; Ayers, P.W. Minimal Basis Iterative Stockholder: Atoms in Molecules for Force-Field Development. J. Chem. Theory Comput. 2016, 12, 3894–3912. [Google Scholar] [CrossRef]
- Liu, S. Identity for Kullback-Leibler divergence in density functional reactivity theory. J. Chem. Phys. 2019, 151, 141103. [Google Scholar] [CrossRef] [PubMed]
- Zhao, Y.L.; Zhao, D.B.; Liu, S.B.; Rong, C.Y.; Ayers, P.W. Why are information-theoretic descriptors powerful predictors of atomic and molecular polarizabilities. J. Mol. Model. 2024, 30, 361. [Google Scholar] [CrossRef]
- Wang, B.; Zhao, D.; Lu, T.; Liu, S.; Rong, C. Quantifications and Applications of Relative Fisher Information in Density Functional Theory. J. Phys. Chem. A 2021, 125, 3802–3811. [Google Scholar] [CrossRef]
- Fu, J.; Li, M.; Rong, C.; Zhao, D.; Liu, S. Information-theoretic quantities as effective descriptors of electrophilicity and nucleophilicity in density functional theory. J. Mol. Model. 2024, 30, 341. [Google Scholar] [CrossRef]
- Ratner, L.W. Method of optimization of structures. Exp. Tech. 1999, 23, 26–30. [Google Scholar] [CrossRef]
- Citation|Gaussian.com. Available online: https://gaussian.com/citation/ (accessed on 16 October 2025).
- McLean, A.D.; Chandler, G.S. Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z = 11–18. J. Chem. Phys. 1980, 72, 5639–5648. [Google Scholar] [CrossRef]
- Zhao, Y.; Truhlar, D.G. The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: Two new functionals and systematic testing of four M06-class functionals and 12 other functionals. Theor. Chem. Acc. 2008, 120, 215–241. [Google Scholar] [CrossRef]
- Zhao, Y.; Truhlar, D.G. Exploring the Limit of Accuracy of the Global Hybrid Meta Density Functional for Main-Group Thermochemistry, Kinetics, and Noncovalent Interactions. J. Chem. Theory Comput. 2008, 4, 1849–1868. [Google Scholar] [CrossRef] [PubMed]
- Bryantsev, V.S.; Diallo, M.S.; Van Duin, A.C.T.; Goddard, W.A. Evaluation of B3LYP, X3LYP, and M06-Class Density Functionals for Predicting the Binding Energies of Neutral, Protonated, and Deprotonated Water Clusters. J. Chem. Theory Comput. 2009, 5, 1016–1026. [Google Scholar] [CrossRef]
- Hohenstein, E.G.; Chill, S.T.; Sherrill, C.D. Assessment of the Performance of the M05−2X and M06−2X Exchange-Correlation Functionals for Noncovalent Interactions in Biomolecules. J. Chem. Theory Comput. 2008, 4, 1996–2000. [Google Scholar] [CrossRef]
- Fisher, R.A. Theory of Statistical Estimation. Math. Proc. Camb. Philos. Soc. 1925, 22, 700–725. [Google Scholar] [CrossRef]
- Lu, T.; Chen, F. Multiwfn: A multifunctional wavefunction analyzer. J. Comput. Chem. 2012, 33, 580–592. [Google Scholar] [CrossRef]
- Mancilla Aguilar, J.L.; Garcia, R.A. Some Results for Switched Homogeneous Systems. IEEE Lat. Am. Trans. 2016, 14, 2706–2712. [Google Scholar] [CrossRef]
- Krivdin, L.B. Computational NMR of charged systems. Magn. Reson. Chem. 2021, 60, 8–79. [Google Scholar] [CrossRef]
- Kezerashvili, R.Y.; Kezerashvili, V.Y. Charge-dipole and dipole-dipole interactions in two-dimensional materials. Phys. Rev. B 2022, 105, 205416. [Google Scholar] [CrossRef]
- Mariscal, A.; Sagal, L.; Doan, C.; Zhai, C.; Liu, D.; Wojtas, L.; Liu, W. Sulfate Recognition in Water via Charge-Assisted Hydrogen Bonding. Chem.-Eur. J. 2025, 31, e202501400. [Google Scholar] [CrossRef] [PubMed]
- Bai, X.; Ning, M.; Brown, R.E. Electron and Hydrogen Transfer in Small Hydrogen Fluoride Anion Clusters. J. Phys. Chem. A 2011, 115, 10596–10599. [Google Scholar] [CrossRef]
- Giovanni, F.D.; Fakhry, S.; Sanchis-Gual, N.; Degollado, J.C.; Font, J.A. A stabilization mechanism for excited fermion–boson stars. Class. Quantum Gravity 2021, 38, 194001. [Google Scholar] [CrossRef]
- Patkar, D.; Ahirwar, M.B.; Gadre, S.R.; Deshmukh, M.M. Unusually Large Hydrogen-Bond Cooperativity in Hydrogen Fluoride Clusters, (HF)n, n = 3 to 8, Revealed by the Molecular Tailoring Approach. J. Phys. Chem. A 2021, 125, 8836–8845. [Google Scholar] [CrossRef]






| R | (H2O)n | (HF)n | H3O+(H2O)n | F−(H2O)n |
|---|---|---|---|---|
| TS | −0.956 | −0.982 | −0.992 | −0.953 |
| Ee | 0.956 | 0.983 | 0.994 | 0.955 |
| EXC | 0.958 | 0.983 | 0.992 | 0.975 |
| Eq | −0.709 | −0.982 | −0.779 | −0.991 |
| ES | 0.635 | 0.987 | −0.936 | 0.643 |
| R | (H2O)n | (HF)n | H3O+(H2O)n | F−(H2O)n |
|---|---|---|---|---|
| HOMO | 0.914 | 0.984 | 0.962 | 0.536 |
| LUMO | −0.965 | −0.986 | −0.999 | −0.996 |
| η | −0.966 | −0.986 | −0.993 | −0.983 |
| ω | 0.962 | 0.988 | 0.998 | 0.988 |
| μ | −0.952 | −0.987 | −0.643 | −0.958 |
| R(p) | (H2O)n | (HF)n | H3O+(H2O)n | F−(H2O)n |
|---|---|---|---|---|
| SS | 0.958 (3.3 × 10−11) | 0.984 (7.2 × 10−15) | 0.993 (6.2 × 10−18) | 0.976 (1.1 × 10−16) |
| IF | 0.635 (0.003) | 0.987 (1.0 × 10−15) | −0.936 (1.4 × 10−09) | 0.643 (0.002) |
| SGBP | 0.952 (1.1 × 10−10) | 0.985 (3.4 × 10−15) | 0.904 (4.6 × 10−08) | 0.990 (1.1 × 10−16) |
| R2 | 0.900 (6.5 × 10−08) | 0.980 (4.7 × 10−14) | 0.970 (1.5 × 10−12) | 0.594 (0.006) |
| R3 | −0.849 (2.3 × 10−06) | −0.985 (4.5 × 10−15) | 0.853 (1.8 × 10−06) | −0.794 (3.0 × 10−05) |
| IG | −0.863 (9.7 × 10−07) | 0.988 (3.4 × 10−16) | 0.648 (0.002) | −0.952 (1.1 × 10−10) |
| rR2 | 0.768 (7.8 × 10−05) | −0.987 (7.3 × 10−16) | −0.527 (0.017) | 0.912 (2.5 × 10−08) |
| rR3 | −0.870 (6.2 × 10−07) | −0.990 (1.2 × 10−16) | 0.549 (0.012) | −0.966 (4.2 × 10−12) |
| G1 | −0.474 (0.035) | 0.987 (1.3 × 10−15) | 0.962 (1.4 × 10−11) | −0.222 (0.346) |
| G2 | 0.531 (0.016) | −0.987 (1.2 × 10−15) | −0.962 (1.3 × 10−11) | 0.456 (0.043) |
| G3 | −0.818 (1.0 × 10−05) | −0.985 (3.6 × 10−15) | −0.989 (2.5 × 10−16) | −0.991 (5.1 × 10−17) |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Zhao, X.; Yan, Z.; Zeng, L.; Zheng, Y.; Rong, C. Information-Theoretic and Conceptual Density Functional Theory Insights on Frustration in Molecular Clusters. Entropy 2026, 28, 213. https://doi.org/10.3390/e28020213
Zhao X, Yan Z, Zeng L, Zheng Y, Rong C. Information-Theoretic and Conceptual Density Functional Theory Insights on Frustration in Molecular Clusters. Entropy. 2026; 28(2):213. https://doi.org/10.3390/e28020213
Chicago/Turabian StyleZhao, Xinyue, Ziqing Yan, Lei Zeng, Yaqin Zheng, and Chunying Rong. 2026. "Information-Theoretic and Conceptual Density Functional Theory Insights on Frustration in Molecular Clusters" Entropy 28, no. 2: 213. https://doi.org/10.3390/e28020213
APA StyleZhao, X., Yan, Z., Zeng, L., Zheng, Y., & Rong, C. (2026). Information-Theoretic and Conceptual Density Functional Theory Insights on Frustration in Molecular Clusters. Entropy, 28(2), 213. https://doi.org/10.3390/e28020213

