Search Results (6)

The Virunga Volcanic Province (VVP), located in the western branch of the East African Rift System, hosts a variety of alkaline lavas erupted from closely spaced volcanic centers. However, the magmatic system of this region, particularly in its eastern sector, remains insufficiently constrained. In this study, we present a petrological and geochemical investigation of basaltic to trachytic lavas from the eastern VVP. Thermobarometric analysis of mineral phases indicates that basalts originated from magma storage zones between 4 and 30 km deep, with crystallization temperatures of ~1200 °C and melt H₂O contents lower than 1 wt%. In contrast, more evolved magmas crystallized at similar depths, but at lower temperatures (~1050 °C) and higher H₂O contents, ranging from 2 to 4 wt%. Thermodynamic modelling suggests that extensive (up to 70%) fractional crystallization of an assemblage dominated by olivine, clinopyroxene, and plagioclase can produce the more evolved trachytic derivatives from basaltic parental melts. When integrated with previous studies from other VVP volcanoes, our findings deepen the understanding of the architecture of the magmatic system beneath the region, suggesting it resembles a well-developed multi-level plumbing system. Full article

Pseudouridine (Ψ), the isomer of uridine (U), is the most abundant type of RNA modification, which is crucial for gene regulation in various cellular processes. Pseudouridine synthases (PUSs) are the key enzymes for the U-to-Ψ conversion. However, little is known about the genome-wide features and biological function of plant PUSs. In this study, we identified 20 AtPUSs and 22 ZmPUSs from Arabidopsis and maize (Zea mays), respectively. Our phylogenetic analysis indicated that both AtPUSs and ZmPUSs could be clustered into six known subfamilies: RluA, RsuA, TruA, TruB, PUS10, and TruD. RluA subfamily is the largest subfamily in both Arabidopsis and maize. It’s noteworthy that except the canonical XXHRLD-type RluAs, another three conserved RluA variants, including XXNRLD-, XXHQID-, and XXHRLG-type were also identified in those key nodes of vascular plants. Subcellular localization analysis of representative AtPUSs and ZmPUSs in each subfamily revealed that PUS proteins were localized in different organelles including nucleus, cytoplasm and chloroplasts. Transcriptional expression analysis indicated that AtPUSs and ZmPUSs were differentially expressed in various tissues and diversely responsive to abiotic stresses, especially suggesting their potential roles in response to heat and salt stresses. All these results would facilitate the functional identification of these pseudouridylation in the future. Full article

Constraining the pre-eruptive processes that modulate the chemical evolution of erupted magmas is a challenge. An opportunity to investigate this issue is offered by the interrogation of the crystals carried in lavas. Here, we employ clinopyroxene crystals from back-arc lavas in order to identify the processes driving basalt to andesite magma evolution within a transcrustal plumbing system. The assembled clinopyroxene archive reveals that mantle melts injected at the crust-mantle transition cool and crystalize, generating a clinopyroxene-dominated mush capped by a melt-rich domain. Magma extracted from this deep storage zone fed the eruption of basalt to basaltic andesite lavas. In addition, chemically evolved melts rapidly rising from this zone briefly stalled at shallow crustal levels, sourcing crystal-poor andesite lavas. Over time, hot ascending primitive magmas intercepted and mixed with shallower cooling magma bodies forming hybrid basic lavas. The blended clinopyroxene cargoes of these lavas provide evidence for the hybridization, which is undetectable from a whole-rock chemical perspective, as mixing involved chemically similar basic magmas. The heterogeneity we found within the clinopyroxene archive is unusual since it provides, for the first time, a complete set of mush-related scenarios by which mantle melts evolve from basalt to andesite compositions. Neither the whole-rock chemistry alone nor the record of the mineral phases crystallizing subsequent to clinopyroxene can provide insights on such early magmatic processes. The obtained clinopyroxene archive can be used as a template for interpretation of the record preserved in the clinopyroxene cargoes of basalt to andesite lavas elsewhere, giving insights into the magma dynamics of the feeding plumbing system that are lost when using whole-rock chemistry. Full article

Pseudouridines are known to be important for optimal translation. In this study we demonstrate an unexpected link between pseudouridylation of tRNA and mutation frequency in Pseudomonas species. We observed that the lack of pseudouridylation activity of pseudouridine synthases TruA or RluA elevates the mutation frequency in Pseudomonas putida 3 to 5-fold. The absence of TruA but not RluA elevates mutation frequency also in Pseudomonas aeruginosa. Based on the results of genetic studies and analysis of proteome data, the mutagenic effect of the pseudouridylation deficiency cannot be ascribed to the involvement of error-prone DNA polymerases or malfunctioning of DNA repair pathways. In addition, although the deficiency in TruA-dependent pseudouridylation made P. putida cells more sensitive to antimicrobial compounds that may cause oxidative stress and DNA damage, cultivation of bacteria in the presence of reactive oxygen species (ROS)-scavenging compounds did not eliminate the mutator phenotype. Thus, the elevated mutation frequency in the absence of tRNA pseudouridylation could be the result of a more specific response or, alternatively, of a cumulative effect of several small effects disturbing distinct cellular functions, which remain undetected when studied independently. This work suggests that pseudouridines link the translation machinery to mutation frequency. Full article

Salmonella is the genus of Gram-negative, facultative intracellular pathogens that have the ability to infect large numbers of animal or human hosts. The S. enterica usg gene is associated with intracellular survival based on ortholog screening and identification. In this study, the λ-Red recombination system was used to construct gene deletion strains and to investigate whether the identified operon was related to intracellular survival. The pdxB-usg-truA-dedA operon enhanced the intracellular survival of S. enterica by resisting the oxidative environment and the usg and truA gene expression was induced by H₂O₂. Moreover, the genes in this operon (except for dedA) contributed to virulence in mice. These findings indicate that the pdxB-usg-truA-dedA operon functions in resistance to oxidative environments during intracellular survival and is required for in vivo S. enterica virulence. This study provides insight toward a better understand of the characteristics of intracellular pathogens and explores the gene modules involved in their intracellular survival. Full article