Search Results (31)

The paper presents the results of a microfossil study of Holocene sediments in the Yana River flow zone in the southeastern part of the Laptev Sea. A rich diatom flora (242 species and intraspecific taxa, of which 177 species are freshwater) was revealed; additionally, five species of marine tintinnids (planktonic ciliates) and 15 species of freshwater testate amoebae (testacean) were discovered for the first time in the sea sediments. Three assemblages of microfossils reflecting the phases of environmental changes during the Holocene transgression are distinguished in the studied sediments of core LV83-32. Assemblage 1 was formed under terrestrial conditions (assemblage of diatoms Eunotia-Pinnularia and testacean Difflugia-Cylindrifflugia-Centropyxis), assemblage 2 in the zone of mixing of sea and fresh waters (assemblages of diatoms Cyclotella striata-Aulacoseira, Thalassiosira hyperborea-Chaetoceros and T. hyperborea-Aulacoseira, testacean Cyclopyxis kahli, tintinnids Tintinnopsis fimbriata), and assemblage 3 reflects modern conditions in the inner shelf of the Laptev Sea under the strong influence of river runoff (assemblage of diatoms T. hyperborea-Aulacoseira-M. arctica and tintinnids Tintinnopsis ventricosoides). Changes in the natural environment in the coastal part of the Laptev Sea shelf during the Holocene, established by microfossil assemblages, are confirmed by geochemical data. Full article

Background/Objectives: Taxonomic profiling of soil microbial communities is useful for assessing and monitoring the biological status of agricultural land. In this study, we aimed to investigate changes in the taxonomic structure of soil organisms in minimally managed agricultural fields. Methods: We used DNA metabarcoding to investigate both terrestrial prokaryotes and eukaryotes in cabbage-cultivated and uncultivated sites in a minimally managed agricultural field in central Japan from February to August 2021. Analyses of the relative abundances of prokaryotic and eukaryotic sequence variants (SVs) and their β-diversities, and the subsequent redundancy analysis (RDA) clarified the dynamic changes in eukaryotic communities during cultivation. We further investigated taxonomic changes in fungi-, protist-, and animal-derived SVs, abundant SVs in each eukaryotic phylum, as well as the co-occurrence networks of the top 150 SVs. Results: The results revealed that the fractions of predatory or parasitic protists and animals increased, whereas those of fungi and earthworm Enchytraeus spp. decreased. The fractions of abundant SVs derived from diatoms, Ciliophora, the class Vampyrellidae (Cercozoa), and mites increased and subsequently decreased during this period. These findings suggest that predatory protists and animals fed on bacteria and autotrophic eukaryotes (such as diatoms) propagated in spring, followed by their propagation and parasitism to host eukaryotes. The networks also changed, especially prokaryotic networks that markedly changed from April to May, and those of eukaryotes from May to June–August, supporting the observations mentioned above. Conclusions: These findings indicate the dynamic and sequential changes in soil communities in fields with minimal agricultural practices and could be useful for sustainable natural farming. Full article

Microalgae are microscopic unicellular organisms that inhabit marine, freshwater, and moist terrestrial ecosystems. The vast number and diversity of microalgal species provide a significant reservoir of biologically active compounds, highly promising for biomedical applications. Diatoms are unicellular eukaryotic algae belonging to the class Bacillariophyceae. They possess intricately structured silica-based cell walls, which contain long-chain polyamines that play important roles in the formation of silica. Long-chain polyamines are uncommon polyamines found only in organisms that produce biosilica. Diatomite, which is a marine sediment of the remains of the silica skeleton of diatoms, could be an abundant source of biogenic silica that can easily be converted to silica particles. This concise review focuses on the biofabrication of polyamine-based nanosilica from diatoms and highlights the possibility of utilizing diatom biosilica as a nanocarrier for drug and siRNA delivery, bioimaging, and bone tissue engineering. The challenges that may affect diatom production, including environmental stresses and climate change, are discussed together with the prospect of increasing diatom-based biosilica production with the desired nanostructures via genetic manipulation. Full article

During our research on the diversity of diatoms and green microalgae from Egypt, four new-to-science, newly recorded, and poorly known species were retrieved from different Egyptian habitats. The new benthic diatom species Halamphora shaabanii A.A. Saber, El-Sheekh, Levkov, H. Saber et Cantonati sp. nov., which could not be identified using the currently available literature, was described from the high-conductivity, oasis lake Abu Nuss in the El-Farafra Oasis, located in the Western Desert of Egypt, employing both light (LM) and scanning electron (SEM) microscopy observations. A detailed comparison of the biometrically distinctive traits, and ecological preferences, of this new diatom species revealed sufficient differentiations from its morphologically most closely related species: H. atacamana, H. caribaea, H. ectorii, H. gasseae, H. halophila, H. mosensis, H. poianensis, and H. vantushpaensis. Ecologically, Halamphora shaabanii can tolerate relatively high nutrients (N and P) and prefers saline inland environments with NaCl water types. The araphid diatom Pseudostaurosiropsis geocollegarum was observed in the epilithic diatom assemblages of the River Nile Damietta Branch and identified on the basis of LM and SEM. From an ecological standpoint, P. geocollegarum seems to prefer elevated nutrient concentrations (meso-eutraphentic species), reflecting different human influences on the freshwater River Nile Damietta Branch. Based on the available literature, this is the first documentation of this freshwater diatom species for Egypt, and the second record for the African continent. Two green motile microalgae, Chlamydomonas proboscigera and Gonium pectorale, were isolated and identified from the terrestrial biomes of the arid habitat “Wadi El-Atshan” in the Eastern Desert of Egypt. C. proboscigera is reported herein for the first time in the Egyptian algal flora, while G. pectorale is poorly documented in the available literature. In light of our findings, the Egyptian habitats, particularly the isolated desert ecosystems, are interesting biodiversity hotspots and have a richer algal microflora than earlier anticipated. Furthermore, more in-depth taxonomic studies, using a combined polyphasic approach, are needed not only to foster our knowledge of the Egyptian and African algal and cyanobacterial diversity and biogeography, but also to be further used in applied environmental sciences. Full article

A multi-proxy study of diatoms, palynofacies, and grain size was conducted on a 100 cm core from Arookutty, Vembanad wetland, Kerala, India, to reconstruct paleolimnological changes during the late Holocene, with a focus on natural versus anthropogenic influences. Four distinct depositional phases, from ca. 500 BCE to ca. 400 CE, were identified, aligning with the Roman Warm Period (RWP). The period from ca. 500 BCE to ca. 450 BCE shows high freshwater and marine planktic diatoms, augmented by silicoflagellates and terrestrial organic matter, with a low dinocyst presence, suggesting a dynamic aquatic environment. The period from ca. 450 BCE to ca. 350 BCE is marked by a high sand content, indicating significant runoff and terrestrial influx, along with increased freshwater and marine planktic diatoms and evidence of human activity in the area. Similarly, the period from ca. 350 BCE to ca. 50 CE is characterized by high sand content and strong anthropogenic influences, with a rise in silicoflagellates, pointing to rising sea levels and high monsoonal precipitation. The period from ca. 50 CE to ca. 400 CE initially shows a decrease in sand and an increase in mud, reflecting a weakening southwest monsoon, likely due to solar variations. However, from ca. 300 CE to ca. 400 CE, sand content rises again, accompanied by high terrestrial influx and dinocysts, while silicoflagellates diminish completely. Thus, despite the dominance of the RWP, the coastal region experienced an extended period of reduced monsoonal activity for a particular span. Full article

The area of the city of Shenzhen at the Pearl River Delta in Guangdong Province, China, comprises rocks that preserve, with few interruptions, around 1.8 billion years of geological history. However, to date, only few scientific studies within a palaeontological context have been conducted on the sediment rocks in Shenzhen. Herein, the fossil record and heritage potential of Shenzhen is reviewed. The few existing previous investigations revealed a rich terrestrial and marine fossil record and show the great potential of this area for future palaeontological research, particularly on the upper Palaeozoic and Mesozoic strata: Carboniferous successions show plant remains and a diverse benthic marine fauna; fossils from Upper Triassic–Middle Jurassic sediment rocks provide important data for terrestrial and marine palaeoecosystems of this time; and the discovery of dinosaur nests in the Upper Cretaceous strata complements the previously known distribution of dinosaurs in South China. Additionally, micropalaeontological and palynological data from the upper Palaeozoic as well as Cenozoic successions in Shenzhen reveal diverse assemblages of foraminifera, ostracods, diatoms, and sporomorphs. Moreover, fossil finds in equivalent rocks in adjacent areas indicate great potential for the units in the Shenzhen area, in which, so far, no fossils have been found. Full article

We used lipid, fatty acid, and stable isotope analyses to investigate variation, over nine months, in the trophodynamics of 10 dominant cryptofaunal, macroalgal/algal, and environmental components from two sites within a rhodolith (Lithothamnion glaciale) bed in southeastern Newfoundland (Canada). There was an overall shift from a diatom-based food web following the spring phytoplankton bloom to a kelp/algae-based food web during fall, accompanied by preferred use of EPA (20:5ω3) over DHA (22:6ω3) in most cryptofauna. The food web contained three trophic levels that encompassed: (1) direct feeding relationships from primary producers (e.g., rhodoliths, macroalgae) to second-order consumers (e.g., sea stars, polychaetes); (2) trophic subsidy from within and outside the rhodolith bed via settlement, resuspension, and consumption of macroalgal fragments and other detrital organic matter; and (3) strong pelagic/benthic coupling. Riverine input did not affect cryptofaunal diets, as shown by the lack of terrestrial biomarkers at the study site nearest to the riverine input, and there were minor differences in trophodynamics between both study sites. The present study’s findings, applicable to relatively broad spatial and temporal domains, as well as those of complementary studies of the same rhodolith bed, uncover high spatio-temporal stability of the rhodolith bed framework and of resident cryptofaunal abundance, diversity, and trophodynamics. Full article

Diamond and oil and gas production carries risks to the aquatic ecosystem. In Eastern Siberia, on the territory of the Central Yakut Plain, mining development of the Yakut diamond-bearing province and Tas-Yuryakh oil and gas condensate field has been underway for several decades. But the problem of studying negative consequences in the region is covered only from the point of view of the impact on terrestrial ecosystems. The purpose of this study was to assess the impact of diamond and oil and gas production on the aquatic ecosystems of the region using the bioindicative properties of diatoms. The work used previously widely tested methods of ecological mapping, JASP, and species–environments relationship analysis. The results of chemical analysis of water showed that in oil and gas production areas, there is no pollution with petroleum products, but the concentration of silicon and zinc is increased. The study identified key pollutants in the Central Yakut Plain and demonstrated the effectiveness of diatoms as bioindicators. Elevated chloride levels were found in diamond mining areas, and increased copper levels were noted in oil production regions. In the diatom flora of the region, 144 species were identified, of which 137 are indicator species. Natural and anthropogenic clusters of environmental factors are identified, characterized by a specific effect on the species composition and taxonomic structure of diatom communities. The results obtained are suitable for assessing the level of anthropogenic impact on aquatic communities of photosynthetic microorganisms in permafrost conditions. Full article

The seasonally ice-covered marine region of the European Arctic has experienced warming and sea ice loss in the last two decades. During expeditions in August 2020 and 2021, new data on size-fractioned primary production (PP), chlorophyll a concentration, phytoplankton biomass and composition and carbon fixation rates in the dark were obtained in the marginal ice zone (MIZ) of the Barents Sea, Nansen Basin and Greenland Sea to better understand the response of Arctic ecosystems to ongoing climate changes. Four different situations were observed in the study region: (i) a bloom of the large-cell diatom Podosira glacialis, whose biomass was trapped in a strong halocline at the edge of a dense ice cover; (ii) a bloom of the chain-like colonies of Thalassiosira diatoms on the shelf in mixed waters in fields of shallow ice that could be supported by “fresh” elements in the polynya condition, as well as by terrestrial run-off and drifting ices; at the late stage, this bloom was accompanied by intensive growth of Phaeocystis pouchetti; (iii) dominance of small-cell phytoplankton under weakened stratification and the significant influence of the Atlantic water, depleted of microelements and silicates; (iv) dominance of dinoflagellates of eutrophic water in the contact zone between the water masses of Arctic origin and Atlantic origin in clear water under conditions of increased light intensity. The >10 µm phytoplankton cell size group increased its relative contribution to PP as a response to stratification, light and nutrient load associated with sea ice conditions. Small phytoplankton with sizes < 2 µm formed the basis of total PP in the MIZ regardless of the state of the sea ice. Full article

The Total Organic Carbon (TOC) content plays a crucial role in gas hydrate exploration because a higher TOC content signifies a greater potential for buried gas hydrates. The regulatory mechanisms governing organic matter in sediment are intricate and influenced by various predominant factors unique to different regions. Notably, the Shenhu area in the South China Sea stands as a pioneering region for methane hydrate research. Despite its significance, limited research has focused on the burial patterns of TOC, resulting in an insufficient dataset to draw definitive conclusions. Consequently, a comprehensive understanding of the burial patterns and controlling factors of TOC within this area remains elusive. This study examines the pore-water characteristics, mineral composition, geochemistry, and sedimentary factors of four distinct sites within the Shenhu region of the South China Sea. The current depths of the Sulfate-Methane Interface (SMI) for sites CL54, CL56, CL57, and CL60 are identified as 28.6, 8.5, 31.9, and 8.1 m below the seafloor (mbsf), respectively. It’s noteworthy that these SMI depths align with locations known to harbor underlying gas hydrates. Scanning Electron Microscopy (SEM) and X-ray Diffraction (XRD) analyses reveal that the primary sediment sources within this region encompass microbial shells (such as foraminifera and diatoms), clay, and terrestrial detritus. In addition, marine productivity exhibits a reverse correlation with TOC content, and both TOC content and Ce/Ce* ratios exhibit synchronous fluctuations with sedimentation rate. Drawing from the sedimentation rate, TOC content, as well as indicators of redox conditions (Mo_EF, Ce/Ce*, Mo/U) and productivity proxies (Ba/Al, P/Al) within the sampled sites, it becomes apparent that high sedimentation rate coupled with ‘anaerobic’ conditions foster favorable conditions for TOC accumulation. This comprehensive investigation not only provides valuable datasets but also offers insights into the intricate processes governing TOC accumulation. Full article

This paper presents the results of a study on the Kulikovo section (south-eastern Baltic Sea coast), a sediment sequence exposing deposits of a post-glacial basin that existed along the edge of the glacier in the Late Pleistocene. The research was targeted at the reconstruction of the dynamics of the local environmental systems in response to climatic oscillations of the Lateglacial (the Older Dryas—first half of the Allerød). The evolution of the local biotic components on the territories of the Baltic region after the ice retreat is still poorly understood. Data from geochronological, lithological, diatom, algo-zoological and palynological analyses provide a reconstruction of local aquatic and terrestrial biocenoses and their response to short-term warmings and coolings that took place 14,000–13,400 cal yr BP. This study has demonstrated that, during the Older Dryas and first part of the Allerød (GI-1d and GI-1c), the aquatic and terrestrial environment of the Kulikovo basin underwent several changes, resulting in eight stages of the basin evolution, most probably related to the short-term climatic fluctuations that could have had a duration of several decades. The data obtained in this study have revealed the fairly dynamic and complex evolution of the pioneer landscapes, as indicated by the changes in the hydrological regime of the area and by the traced successions of plant communities from the pioneer swampy vegetation to park and real forests towards the middle of the Allerød. Full article

In numerous studies, researchers have explored the interactions between fungi and their hosting biota in terrestrial systems, while much less attention has been paid to the counterpart interactions in aquatic, and particularly marine, ecosystems. Despite the growing recognition of the potential functions of fungi in structuring phytoplankton communities, the current insights were mostly derived from phytoplankton hosts, such as diatoms, green microalgae, and cyanobacteria. Dinoflagellates are the second most abundant group of phytoplankton in coastal marine ecosystems, and they are notorious for causing harmful algal blooms (HABs). In this study, we used high-throughput amplicon sequencing to capture global snapshots of specific fungal assemblages associated with laboratory-cultured marine dinoflagellate. We investigated a total of 13 clonal cultures of the dinoflagellate Karlodinium veneficum that were previously isolated from 5 geographic origins and have been maintained in our laboratory from several months to more than 14 years. The total recovered fungal microbiome, which consisted of 349 ASVs (amplicon sequencing variants, sequences clustered at a 100% sequence identity), could be assigned to 4 phyla, 18 classes, 37 orders, 65 families, 97 genera, and 131 species. The fungal consortium displayed high diversity and was dominated by filamentous fungi and ascomycetous and basidiomycetous yeasts. A core set of three genera among all the detected fungi was constitutively present in the K. veneficum strains isolated from geographically distant regions, with the top two most abundant genera, Thyridium and Pseudeurotium, capable of using hydrocarbons as the sole or major source of carbon and energy. In addition, fungal taxa previously documented as endophytes in other hosts were also found in all tested strains of K. veneficum. Because host–endophyte interactions are highly variable and strongly case-dependent, these fungal taxa were not necessarily genuine endosymbionts of K. veneficum; instead, it raised the possibility that dinoflagellates could potentially serve as an alternative ecological niche for the colonization of fungal endophytes. Our findings lay the foundation for further investigations into the potential roles or functions of fungi in the regulation of the growth dynamics and HABs of marine dinoflagellates in the field. Full article

The biodiversity–ecosystem functioning (BEF) relationship has been studied extensively for the past 30 years, mainly in terrestrial plant ecosystems using experimental approaches. Field studies in aquatic systems are scarce, and considering primary producers, they mainly focus on phytoplankton assemblages, whereas benthic diatoms in rivers are considerably understudied in this regard. We performed a field study across nine rivers in Greece, and we coupled the observed field results with model simulations. We tested the hypothesis that the diversity–biomass (as a surrogate of ecosystem functioning) relationship in benthic diatoms would be affected by abiotic factors and would be time-dependent due to the highly dynamic nature of rivers. Indeed, geology played an important role in the form of the BEF relationship that was positive in siliceous and absent in calcareous substrates. Geology was responsible for nutrient concentrations, which, in turn, were responsible for the dominance of specific functional traits. Furthermore, model simulations showed the time dependence of the BEF form, as less mature assemblages tend to present a positive BEF. This was the first large-scale field study on the BEF relationship of benthic diatom assemblages, offering useful insights into the function and diversity of these overlooked ecosystems and assemblages. Full article

In material isolated from soils of Cát Tiên National Park, we isolated four strains that were assigned to the genus Sellaphora. Identification was carried out on the basis of morphological and molecular studies. We proposed a new species named Sellaphora terrestris sp. nov. An evolutionary distance matrix, based on the 18S rDNA gene including the V4 domain, showed the new species shared 94.1–97.2% similarities with other Sellaphora sequences. The new species is morphologically similar to species previously identified as representatives of the genus Microcostatus. Full article

We studied the life history, diet, and trophic ecology of Hydropsyche alternans in four rocky sites located along the south-central coast of Lake Superior. The H. alternans life history and broad trophic niche space were similar to those of its riverine relatives. Quantitative sampling over the course of one ice-free season revealed that most individuals lived univoltine life histories that featured early to mid-summer mating, and oviposition and rapid growth and development through summer into fall. Most individuals overwintered as ultimate or penultimate larval instars. Pupation followed ice-out in the spring. Gut content sampling and δ¹³C and δ¹⁵N stable isotope analyses indicated that the typical larval diet is a mix of benthic, pelagic, and terrestrial food resources, including diatoms, small arthropods, sloughed periphyton, and in one site, fugal hyphae apparently of foredune origin. As a suspension-feeding omnivore that relies on waves and currents to deliver food to its nets, H. alternans larvae form energetic links between coastal, nearshore, and offshore food webs. These connections have been lost throughout the lower Laurentian Great Lakes as a consequence of the invasion and spread of Dreissena mussels. Full article